SMTL ID : 1w7x.1

Factor7 - 413 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-oligomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: C.158, S.162, H.221, F.222 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.162, A:H.221, A:F.222, A:F.222 GOL.2: 6 residues within 4Å: Chain A: F.43, D.44, W.49, I.78, P.84, L.248 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.44 Water bridges: A:D.44

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.68, H2O.7, H2O.7

1 x 413: (S)-[(R)-2-(4-BENZYLOXY-3-METHOXY-PHENYL)-2-(4-CARBAMIMIDOYL-PHENYLAMINO)-ACETYLAMINO]-PHENYL-ACETIC ACID(Non-covalent)

413.4: 20 residues within 4Å: Chain A: H.41, D.44, K.45, T.87, D.90, S.168, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:H.41, A:P.169, A:V.210, A:W.212, A:W.212 Hydrogen bonds: A:S.187, A:S.187, A:S.192, A:S.192, A:G.215 Water bridges: A:K.45, A:K.45, A:W.212 Salt bridges: A:K.45, A:K.189 pi-Stacking: A:H.41

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: M.154, T.155, R.227 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.155, A:T.155 Water bridges: A:R.152, A:R.152, A:Q.156, A:Q.156 Salt bridges: A:R.227 SO4.6: 2 residues within 4Å: Chain A: S.241, E.242 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.242 Water bridges: A:R.240, A:R.240, A:S.241, A:R.244, A:R.244 SO4.7: 4 residues within 4Å: Chain A: T.103, D.104, H.105 Chain B: Y.44 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.67, A:D.104, A:H.105, B:Y.44 Water bridges: A:D.67, A:D.67, A:D.104, A:H.105, A:H.105, B:Y.44 Salt bridges: A:H.105 SO4.8: 5 residues within 4Å: Chain A: R.119 Chain B: C.2, C.13, S.14, D.15 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.15, B:D.15 Water bridges: B:S.14, A:R.119, A:R.119 Salt bridges: A:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zbinden, K.G. et al., Selective and Orally Bioavailable Phenylglycine Tissue Factor/Factor Viia Inhibitors. Bioorg.Med.Chem.Lett. (2005)

Release Date

2005-10-25

Peptides

BLOOD COAGULATION FACTOR VIIA: A
BLOOD COAGULATION FACTOR VIIA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

BLOOD COAGULATION FACTOR VIIA

BLOOD COAGULATION FACTOR VIIA

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