SMTL ID : 5pan.1

Crystal Structure of Factor VIIa in complex with 5-hydroxy-N-(3-oxo-1,2-dihydroisoindol-5-yl)-1-[3-[(phenylcarbamoylamino)methyl]phenyl]pyrazole-4-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: C.14, S.15, D.16 Chain B: R.119 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.119 Hydrogen bonds: A:C.14, A:D.16 SO4.6: 3 residues within 4Å: Chain B: M.154, T.155, R.227 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.155, B:T.155 Water bridges: B:R.152, B:R.227 Salt bridges: B:R.227 SO4.7: 3 residues within 4Å: Chain B: S.241, E.242, R.244 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.242, B:R.244 Water bridges: B:R.240, B:R.244

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.49, I.50, L.53, E.54 Chain B: H.199, G.202, W.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.50, A:E.54 GOL.3: 5 residues within 4Å: Chain A: R.25, C.26, Y.30, S.31, L.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.26, A:Y.30, A:L.32, A:L.32

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.68, H2O.5, H2O.10

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain B: G.246, V.247 Ligand excluded by PLIP

1 x 7Z4: 5-hydroxy-N-(1-oxo-1H-isoindol-6-yl)-1-(3-{[(phenylcarbamoyl)amino]methyl}phenyl)-1H-pyrazole-4-carboxamide(Non-covalent)

7Z4.8: 20 residues within 4Å: Chain B: L.25, C.26, H.41, C.42, D.44, K.45, P.84, G.85, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:K.189, B:V.210, B:W.212, B:W.212 Hydrogen bonds: B:H.41, B:H.41, B:D.44, B:D.44, B:S.192, B:S.192, B:G.213, B:G.215 Water bridges: B:K.189, B:K.189, B:S.192, B:V.224 pi-Stacking: B:H.41, B:W.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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