SMTL ID : 5pb0.1

Crystal Structure of Factor VIIa in complex with 2-(4-ethoxy-3-methoxyphenyl)-2-(isoquinolin-6-ylamino)acetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: V.43 Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: G.246, V.247 Ligand excluded by PLIP

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: C.3, C.14, S.15, D.16 Chain B: T.115, R.119 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:C.14, A:D.16, A:D.16 Water bridges: B:T.115, B:T.115 Salt bridges: B:R.119 SO4.8: 4 residues within 4Å: Chain A: Y.45 Chain B: T.103, D.104, H.105 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.103, B:D.104, B:H.105 Water bridges: B:T.103, B:T.103, B:D.104, A:Y.45 Salt bridges: B:H.105 SO4.9: 7 residues within 4Å: Chain B: L.25, C.26, H.41, C.42, K.189, S.192 Ligands: 7LX.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.25, B:S.192 Salt bridges: B:H.41 SO4.10: 2 residues within 4Å: Chain B: S.241, E.242 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.242 Water bridges: B:R.240, B:R.240, B:S.241, B:R.244 SO4.11: 3 residues within 4Å: Chain B: M.154, T.155, R.227 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.155 Water bridges: B:R.152, B:Q.156, B:R.227 Salt bridges: B:R.227

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: G.48, K.49, I.50, E.54 Chain B: H.199, G.202, T.203, W.204 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.48, A:I.50, A:I.50, A:E.54

1 x 7LX: (2~{R})-2-(4-ethoxy-3-methoxy-phenyl)-2-(isoquinolin-6-ylamino)ethanoic acid(Non-covalent)

7LX.4: 17 residues within 4Å: Chain B: H.41, T.86, T.87, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223 Ligands: SO4.9 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:T.87, B:P.169, B:V.210, B:W.212, B:W.212 Hydrogen bonds: B:S.192, B:S.192 Salt bridges: B:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.68, H2O.4, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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