- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: M.154, T.155, R.227
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.155, A:T.155
- Water bridges: A:R.152, A:Q.156, A:R.227, A:R.227
- Salt bridges: A:R.227
SO4.4: 2 residues within 4Å:- Chain A: S.241, E.242
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.242
SO4.5: 5 residues within 4Å:- Chain A: S.70, R.71, R.72, H.97, Q.98
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.72, A:H.97, A:Q.98, A:Q.98
- Salt bridges: A:H.97
SO4.6: 3 residues within 4Å:- Chain A: T.86, T.87, P.169
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.85, A:T.87
- Water bridges: A:N.88, A:N.170
SO4.7: 5 residues within 4Å:- Chain A: S.162, Q.214, H.221, F.222, V.224
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.162, A:Q.214, A:F.222
- Salt bridges: A:H.221
SO4.8: 5 residues within 4Å:- Chain A: D.67, T.103, D.104, H.105
- Chain B: Y.44
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.104, A:H.105, B:Y.44
- Water bridges: A:D.67
- Salt bridges: A:H.105
SO4.10: 4 residues within 4Å:- Chain A: R.119
- Chain B: C.13, S.14, D.15
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:D.15
- Water bridges: B:S.14, A:R.119
- Salt bridges: A:R.119
SO4.13: 3 residues within 4Å:- Chain C: M.154, T.155, R.227
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.155
- Water bridges: C:R.152, C:R.152, C:T.155, C:Q.156
- Salt bridges: C:R.227
SO4.14: 2 residues within 4Å:- Chain C: S.241, E.242
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.242
SO4.15: 5 residues within 4Å:- Chain C: S.70, R.71, R.72, H.97, Q.98
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.72, C:H.97, C:Q.98, C:Q.98
- Salt bridges: C:H.97
SO4.16: 3 residues within 4Å:- Chain C: T.86, T.87, P.169
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:G.85, C:T.87
- Water bridges: C:T.87, C:N.88, C:N.170
SO4.17: 5 residues within 4Å:- Chain C: S.162, Q.214, H.221, F.222, V.224
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.162, C:Q.214, C:F.222
- Salt bridges: C:H.221
SO4.18: 5 residues within 4Å:- Chain C: D.67, T.103, D.104, H.105
- Chain D: Y.44
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.104, C:H.105
- Water bridges: C:T.103, C:T.103
- Salt bridges: C:H.105
SO4.20: 4 residues within 4Å:- Chain C: R.119
- Chain D: C.13, S.14, D.15
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:D.15, D:D.15
- Water bridges: D:S.14, C:R.119
- Salt bridges: C:R.119
- 2 x 905: (R)-4-[2-(3-AMINO-BENZENESULFONYLAMINO)-1-(3,5-DIETHOXY-2-FLUOROPHENYL)-2-OXO-ETHYLAMINO]-2-HYDROXY-BENZAMIDINE(Non-covalent)
905.9: 18 residues within 4Å:- Chain A: H.41, D.44, K.45, T.86, T.87, D.90, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:K.189, A:V.210
- Hydrogen bonds: A:D.186, A:S.187, A:S.187, A:S.192, A:S.192, A:G.213, A:G.215
- Water bridges: A:D.44, A:W.212, A:A.217
- pi-Cation interactions: A:H.41
905.19: 18 residues within 4Å:- Chain C: H.41, D.44, K.45, T.86, T.87, D.90, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:K.189, C:V.210
- Hydrogen bonds: C:D.186, C:S.187, C:S.187, C:S.192, C:S.192, C:G.213, C:G.215
- Water bridges: C:D.44, C:W.212, C:T.218
- pi-Cation interactions: C:H.41
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olivero, A.G. et al., A selective, slow binding inhibitor of factor VIIa binds to a nonstandard active site conformation and attenuates thrombus formation in vivo. J.Biol.Chem. (2005)
- Release Date
- 2005-01-18
- Peptides
- Coagulation factor VII: AC
Coagulation factor VII: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HC
HB
LD
L
SMTL ID : 1ygc.2 (1 other biounit)
Short Factor VIIa with a small molecule inhibitor
Coagulation factor VII
Toggle Identical (AC)Coagulation factor VII
Toggle Identical (BD)Related Entries With Identical Sequence
1cvw.1 | 1dan.1 | 1dva.1 | 1dva.2 | 1fak.1 | 1j9c.1 | 1jbu.1 | 1jbu.2 | 1kli.1 | 1kli.2 | 1klj.1 | 1o5d.1 | 1qfk.1 | 1w0y.1 | 1w2k.1 | 1w7x.1 | 1w8b.1 | 1wqv.1 | 1wss.1 | 1wtg.1 | 1wun.1 | 1wv7.1 | 1ygc.1 | 1z6j.1 | 2a2q.1 | 2aei.1 | 2aer.1 | 2b7d.1 | 2b8o.1 | 2bz6.1 more...less...2c4f.1 | 2ec9.1 | 2f9b.1 | 2fir.1 | 2flb.1 | 2flr.1 | 2puq.1 | 2zp0.1 | 2zwl.1 | 2zzu.1 | 3th2.1 | 3th3.1 | 3th4.1 | 4ibl.1 | 4ish.1 | 4isi.1 | 4jyu.1 | 4jyv.1 | 4jzd.1 | 4jze.1 | 4jzf.1 | 4na9.1 | 4ng9.1 | 4nga.1 | 4x8s.1 | 4x8t.1 | 4x8u.1 | 4x8v.1 | 4yt6.1 | 4yt7.1 | 4zxx.1 | 4zxy.1 | 5i46.1 | 5l2y.1 | 5l2z.1 | 5l30.1 | 5pa8.1 | 5pa9.1 | 5paa.1 | 5pab.1 | 5pac.1 | 5pae.1 | 5paf.1 | 5pag.1 | 5pai.1 | 5paj.1 | 5pak.1 | 5pam.1 | 5pan.1 | 5pao.1 | 5paq.1 | 5par.1 | 5pas.1 | 5pat.1 | 5pau.1 | 5pav.1 | 5paw.1 | 5pax.1 | 5pay.1 | 5pb0.1 | 5pb1.1 | 5pb2.1 | 5pb3.1 | 5pb4.1 | 5pb5.1 | 5pb6.1 | 5tqe.1 | 5tqf.1 | 5tqg.1 | 5u6j.1 | 8cn9.1 | 8cn9.2 | 8cn9.3 | 8cn9.4