SMTL ID : 4zxx.1

FACTOR VIIA IN COMPLEX WITH THE INHIBITOR N-{3-[(2R)-1-{(2R)-2-[(1-aminoisoquinolin-6-yl)amino]-2-phenylacetyl}pyrrolidin-2-yl]-4-(propan-2-ylsulfonyl)phenyl}acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 4T0: N-{3-[(2R)-1-{(2R)-2-[(1-aminoisoquinolin-6-yl)amino]-2-phenylacetyl}pyrrolidin-2-yl]-4-(propan-2-ylsulfonyl)phenyl}acetamide(Non-covalent)

4T0.1: 23 residues within 4Å: Chain A: L.25, C.26, H.41, C.42, D.44, K.45, G.85, T.86, T.87, D.186, S.187, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, A.217, G.223, Y.225 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.25, A:H.41, A:T.87, A:V.210, A:W.212 Hydrogen bonds: A:D.186, A:S.187, A:S.192, A:S.192 Water bridges: A:W.212 pi-Stacking: A:H.41, A:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.58, D.60, E.63, H.64, E.68 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.2

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.71, R.72, H.97, Q.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98, A:Q.98 Salt bridges: A:R.72, A:H.97 SO4.4: 6 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.21, A:K.47, A:N.48, A:N.48 SO4.5: 4 residues within 4Å: Chain A: I.31, N.32, Q.236 Chain B: H.26 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.31, A:N.32 Salt bridges: B:H.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priestley, E.S. et al., Structure-Based Design of Macrocyclic Coagulation Factor VIIa Inhibitors. J.Med.Chem. (2015)

Release Date

2015-07-22

Peptides

Coagulation factor VIIa heavy chain: A
Coagulation factor VIIa light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Coagulation factor VIIa heavy chain

Coagulation factor VIIa light chain

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