SMTL ID : 5pat.1

Crystal Structure of Factor VIIa in complex with N-(2-amino-1H-benzimidazol-5-yl)-2-(3-chlorophenyl)acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7ZG: N-(2-amino-1H-benzimidazol-5-yl)-2-(3-chlorophenyl)acetamide(Non-covalent)

7ZG.1: 15 residues within 4Å: Chain B: H.41, T.86, T.87, D.90, D.186, S.187, C.188, S.192, V.210, S.211, W.212, G.213, G.215, C.216 Ligands: SO4.2 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:T.87, B:V.210, B:W.212 Hydrogen bonds: B:S.192, B:S.192, B:G.213, B:G.215, B:G.215, B:A.217 Water bridges: B:W.212 Salt bridges: B:D.186 pi-Stacking: B:H.41 Halogen bonds: B:D.90, B:S.211

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain B: H.41, K.189, G.190, S.192 Ligands: 7ZG.1 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.190, B:S.192, B:S.192 Water bridges: B:G.190 Salt bridges: B:H.41 SO4.3: 3 residues within 4Å: Chain B: M.154, T.155, R.227 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.155 Water bridges: B:R.152, B:R.152 Salt bridges: B:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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