SMTL ID : 4jyu.1

Structure of factor VIIA in complex with the inhibitor (2R)-2-[(1-AMINOISOQUINOLIN-6-YL)AMINO]-2-[3-ETHOXY-4-(PROPAN-2-YLOXY)PHENYL]-N-(PHENYLSULFONYL)ETHANAMIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-oligomer

Ligands

1 x 1OK: (2R)-2-[(1-AMINOISOQUINOLIN-6-YL)AMINO]-2-[3-ETHOXY-4-(PROPAN-2-YLOXY)PHENYL]-N-(PHENYLSULFONYL)ETHANAMIDE(Non-covalent)

1OK.1: 21 residues within 4Å: Chain A: H.41, D.44, T.86, T.87, D.90, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223 Ligands: GOL.7, GOL.10 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.210, A:W.212, A:W.212 Hydrogen bonds: A:D.186, A:S.187, A:S.192, A:S.192 Water bridges: A:W.212, A:Q.214 pi-Stacking: A:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.11, H2O.11

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.70, R.71, R.72, H.97, Q.98 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98, A:Q.98 Water bridges: A:R.72 Salt bridges: A:R.72, A:H.97 SO4.4: 6 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.45, A:K.47, A:N.48, A:N.48, A:N.48 SO4.5: 6 residues within 4Å: Chain A: S.162, I.171, Q.214, H.221, F.222, V.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.162, A:F.222 Salt bridges: A:H.221 SO4.6: 6 residues within 4Å: Chain A: I.31, N.32, L.111, Q.236, M.239 Chain B: H.26 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Water bridges: B:H.26, B:H.26, B:E.27, B:E.27 Salt bridges: B:H.26 Hydrogen bonds: A:N.32, A:Q.236

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 8 residues within 4Å: Chain A: L.25, C.26, H.41, C.42, K.189, S.192 Ligands: 1OK.1, GOL.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.192, A:S.192 Water bridges: A:Q.24, A:H.41, A:C.42 GOL.8: 6 residues within 4Å: Chain A: F.43, D.44, W.49, I.78, P.84, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.43 GOL.9: 6 residues within 4Å: Chain A: E.11, C.12, L.128, W.204 Chain B: I.49, L.52 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.11, A:E.11 Water bridges: A:W.204 GOL.10: 7 residues within 4Å: Chain A: Q.24, L.25, Q.134, K.189, G.190 Ligands: 1OK.1, GOL.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.24, A:Q.134, A:K.189 Water bridges: A:L.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glunz, P.W. et al., Nonbenzamidine acylsulfonamide tissue factor-factor VIIa inhibitors. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-07-24

Peptides

Factor VII light chain: A
Factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Factor VII light chain

Factor VII heavy chain

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