SMTL ID : 5pak.1

Crystal Structure of Factor VIIa in complex with N-[[4-(aminomethyl)-2-(2-amino-2-oxoethoxy)phenyl]methyl]-2-(4-hydroxyphenyl)-2-methoxyacetamide;hydrochloride

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.63, B:E.68, H2O.5, H2O.11

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: M.154, T.155, R.227 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.155 Water bridges: B:R.152, B:Q.156, B:R.227 Salt bridges: B:R.227 SO4.3: 2 residues within 4Å: Chain B: S.241, E.242 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.242 Water bridges: B:R.240, B:R.244

1 x 7YP: (2~{S})-~{N}-[[4-(aminomethyl)-2-(2-azanyl-2-oxidanylidene-ethoxy)phenyl]methyl]-2-(4-hydroxyphenyl)-2-methoxy-ethanami de(Non-covalent)

7YP.4: 16 residues within 4Å: Chain B: H.41, G.85, T.86, T.87, D.90, P.169, D.186, S.187, C.188, S.192, V.210, S.211, W.212, G.213, G.215, G.223 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:T.87, B:V.210, B:W.212 Hydrogen bonds: B:D.186, B:S.192, B:S.211, B:G.215 Water bridges: B:W.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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