SMTL ID : 5pam.1

Crystal Structure of Factor VIIa in complex with 2-[(1-aminoisoquinolin-6-yl)amino]-2-(5-ethoxy-2-fluorophenyl)-1-(2-phenylpyrrolidin-1-yl)ethanone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: T.42, V.43 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: S.241, E.242 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: R.50, G.246, V.247 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.48, K.49, I.50, E.54 Chain B: H.199, G.202, T.203, W.204 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:W.204, A:G.48, A:I.50, A:I.50, A:E.54 GOL.3: 5 residues within 4Å: Chain A: R.25, C.26, Y.30, S.31, L.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.26, A:Y.30, A:L.32, A:L.32

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.68, H2O.5, H2O.10

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain B: M.154, T.155, R.227 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.155 Water bridges: B:Q.156, B:Q.156, B:Q.156, B:R.227, B:R.227 Salt bridges: B:R.227

1 x 7Z1: (2~{R})-2-[(1-azanylisoquinolin-6-yl)amino]-2-(5-ethoxy-2-fluoranyl-phenyl)-1-[(2~{R})-2-phenylpyrrolidin-1-yl]ethanone(Non-covalent)

7Z1.8: 18 residues within 4Å: Chain B: H.41, D.44, K.45, T.86, T.87, D.90, D.186, S.187, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.210 Hydrogen bonds: B:H.41, B:D.186, B:S.192 Water bridges: B:W.212, B:Q.214 pi-Cation interactions: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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