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SMTL ID : 1ent.1

X-RAY ANALYSES OF ASPARTIC PROTEINASES. THE THREE-DIMENSIONAL STRUCTURE AT 2.1 ANGSTROMS RESOLUTION OF ENDOTHIAPEPSIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 0EM: N-(tert-butoxycarbonyl)-L-phenylalanyl-N-{(1S)-1-[(R)-hydroxy(2-{[(2S)-2-methylbutyl]amino}-2-oxoethyl)phosphoryl]-3-methylbutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide(Non-covalent)

0EM.1:

24 residues within 4Å:

Chain A: I.10, D.15, D.33, D.35, G.37, S.38, S.78, Y.79, G.80, D.81, S.83, D.119, I.122, L.125, L.133, F.194, D.219, G.221, T.222, T.223, L.224, Y.226, I.300, I.304

19 PLIP interactions:

19 interactions with chain A

Hydrophobic interactions: A:I.10, A:D.15, A:Y.79, A:Y.79, A:D.81, A:I.122, A:L.125, A:F.194, A:L.224
Hydrogen bonds: A:D.35, A:G.37, A:G.80, A:D.81, A:G.221, A:G.221, A:T.223, A:T.223, A:T.223
Water bridges: A:Y.226

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	4 residues within 4Å: Chain A: K.243, S.245, S.246, S.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.246, A:S.246, A:S.247, A:S.247 Salt bridges: A:K.243
SO4.3:	2 residues within 4Å: Chain A: S.113, S.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.114 Water bridges: A:S.113, A:S.115

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Blundell, T.L. et al., X-ray analyses of aspartic proteinases. The three-dimensional structure at 2.1 A resolution of endothiapepsin. J.Mol.Biol. (1990)

Release Date

1994-01-31

Peptides

ENDOTHIAPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ENDOTHIAPEPSIN

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