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SMTL ID : 1epn.1

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 2ZS: N-(morpholin-4-ylcarbonyl)-L-phenylalanyl-N-[(1R,2S)-1-(cyclohexylmethyl)-2-hydroxy-3-(1-methylethoxy)-3-oxopropyl]-S-methyl-L-cysteinamide(Non-covalent)

2ZS.1:

20 residues within 4Å:

Chain A: I.10, D.15, A.16, D.33, D.35, G.37, Y.79, G.80, D.81, S.83, F.116, D.119, L.125, F.194, D.219, G.221, T.222, T.223, L.224, I.300

20 PLIP interactions:

20 interactions with chain A

Hydrophobic interactions: A:I.10, A:D.15, A:A.16, A:D.33, A:Y.79, A:Y.79, A:F.116, A:F.116, A:L.125, A:L.125, A:F.194
Hydrogen bonds: A:D.35, A:G.80, A:D.81, A:D.81, A:G.221, A:T.223, A:T.223, A:T.223
Water bridges: A:Y.226

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	4 residues within 4Å: Chain A: K.243, S.245, S.246, S.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.246, A:S.246, A:S.247, A:S.247 Salt bridges: A:K.243
SO4.3:	4 residues within 4Å: Chain A: Y.179, G.181, S.182, I.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.179, A:Y.179, A:I.183
SO4.4:	2 residues within 4Å: Chain A: S.113, S.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.114 Water bridges: A:V.112, A:S.114

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Bailey, D. et al., A structural comparison of 21 inhibitor complexes of the aspartic proteinase from Endothia parasitica. Protein Sci. (1994)

Release Date

1994-12-20

Peptides

ENDOTHIAPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ENDOTHIAPEPSIN

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