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SMTL ID : 1epq.1

ENDOTHIA ASPARTIC PROTEINASE (ENDOTHIAPEPSIN) COMPLEXED WITH PD-133,450 (SOT PHE GLY+SCC GCL)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 0QF: N-[(1S)-2-{[(2S,3R,4S)-1-cyclohexyl-3,4-dihydroxy-6-methylheptan-2-yl]amino}-1-(ethylsulfanyl)-2-oxoethyl]-Nalpha-(morp holin-4-ylsulfonyl)-L-phenylalaninamide(Non-covalent)

0QF.1:

20 residues within 4Å:

Chain A: D.15, A.16, D.33, D.35, G.37, Y.79, G.80, D.81, S.83, F.116, D.119, L.125, F.194, I.217, D.219, G.221, T.222, T.223, I.300, I.304

18 PLIP interactions:

18 interactions with chain A

Hydrophobic interactions: A:A.16, A:Y.79, A:Y.79, A:F.116, A:F.116, A:L.125, A:F.194, A:I.217, A:I.300
Hydrogen bonds: A:D.35, A:G.80, A:D.81, A:D.81, A:G.221, A:T.223, A:T.223
Water bridges: A:L.224, A:Y.226

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	4 residues within 4Å: Chain A: K.243, S.245, S.246, S.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.246, A:S.246, A:S.247, A:S.247 Salt bridges: A:K.243
SO4.3:	2 residues within 4Å: Chain A: S.113, S.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.114

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lunney, E.A. et al., Analyses of ligand binding in five endothiapepsin crystal complexes and their use in the design and evaluation of novel renin inhibitors. J.Med.Chem. (1993)

Release Date

1994-12-20

Peptides

ENDOTHIAPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ENDOTHIAPEPSIN

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