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SMTL ID : 1od1.1

Endothiapepsin PD135,040 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x 0QS: N~2~-[(2R)-2-benzyl-3-(tert-butylsulfonyl)propanoyl]-N-{(1R)-1-(cyclohexylmethyl)-3,3-difluoro-2,2-dihydroxy-4-[(2-morpholin-4-ylethyl)amino]-4-oxobutyl}-3-(1H-imidazol-3-ium-4-yl)-L-alaninamide(Non-covalent)

0QS.1:

23 residues within 4Å:

Chain A: I.10, D.15, A.16, D.33, D.35, G.37, S.38, Y.79, G.80, D.81, S.83, F.116, D.119, L.125, L.133, T.135, D.219, G.221, T.222, T.223, L.224, Y.226, I.304

19 PLIP interactions:

19 interactions with chain A

Hydrophobic interactions: A:I.10, A:D.15, A:A.16, A:Y.79, A:Y.79, A:D.81, A:F.116, A:L.125, A:L.224
Hydrogen bonds: A:G.37, A:G.80, A:D.81, A:D.81, A:G.221, A:T.222, A:T.223, A:T.223, A:T.223
Water bridges: A:L.224

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	2 residues within 4Å: Chain A: G.181, S.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.182
SO4.3:	5 residues within 4Å: Chain A: S.213, I.214, D.215, P.228, N.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.215, A:N.303 Water bridges: A:N.303, A:N.303

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Coates, L. et al., The Structure of Endothiapepsin Complexed with the Gem-Diol Inhibitor Pd-135,040 at 1.37 A. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-06-12

Peptides

ENDOTHIAPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ENDOTHIAPEPSIN

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5lwr.1 | 5lws.1 | 5lwt.1 | 5lwu.1 | 5mb0.1 | 5mb3.1 | 5mb5.1 | 5mb6.1 | 5mb7.1 | 5og7.1 | 5oje.1 | 5oyq.1 | 5oyr.1 | 5oys.1 | 5oyt.1 | 5oyu.1 | 5oyv.1 | 5oyw.1 | 5oyx.1 | 5oyy.1 | 5oyz.1 | 5oz0.1 | 5oz1.1 | 5oz2.1 | 5oz3.1 | 5oz4.1 | 5oz5.1 | 5oz6.1 | 5oz7.1 | 5oz8.1 | 5oz9.1 | 5oza.1 | 5ozb.1 | 5ozc.1 | 5ozd.1 | 5oze.1 | 5ozf.1 | 5ozg.1 | 5ozh.1 | 5ozi.1 | 5ozj.1 | 5ozk.1 | 5ozl.1 | 5ozm.1 | 5ozn.1 | 5ozo.1 | 5ozp.1 | 5ozq.1 | 5ozr.1 | 5ozs.1 | 5ozt.1 | 5ozu.1 | 5ozv.1 | 5ozw.1 | 5ozx.1 | 5ozy.1 | 5ozz.1 | 5p00.1 | 5p01.1 | 5p02.1 | 5p03.1 | 5p04.1 | 5p05.1 | 5p06.1 | 5p07.1 | 5p08.1 | 5p09.1 | 5p0a.1 | 5p0b.1 | 5p0c.1 | 5p0d.1 | 5p0e.1 | 5p0f.1 | 5p0g.1 | 5p0h.1 | 5p0i.1 | 5p0j.1 | 5p0k.1 | 5p0l.1 | 5p0m.1 | 5p0n.1 | 5p0o.1 | 5p0p.1 | 5p0q.1 | 5p0r.1 | 5p0s.1 | 5p0t.1 | 5p0u.1 | 5p0v.1 | 5p0w.1 | 5p0x.1 | 5p0y.1 | 5p0z.1 | 5p10.1 | 5p11.1 | 5p12.1 | 5p13.1 | 5p14.1 | 5p15.1 | 5p16.1 | 5p17.1 | 5p18.1 | 5p19.1 | 5p1a.1 | 5p1b.1 | 5p1c.1 | 5p1d.1 | 5p1e.1 | 5p1f.1 | 5p1g.1 | 5p1h.1 | 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