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SMTL ID : 1od1.1

Endothiapepsin PD135,040 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x 0QS: N~2~-[(2R)-2-BENZYL-3-(TERT-BUTYLSULFONYL)PROPANOYL]-N-{(1R)-1-(CYCLOHEXYLMETHYL)-3,3-DIFLUORO-2,2-DIHYDROXY-4-[(2-MORPHOLIN-4-YLETHYL)AMINO]-4-OXOBUTYL}-3-(1H-IMIDAZOL-3-IUM-4-YL)-L-ALANINAMIDE(Non-covalent)

0QS.1:

23 residues within 4Å:

Chain A: I.10, D.15, A.16, D.33, D.35, G.37, S.38, Y.79, G.80, D.81, S.83, F.116, D.119, L.125, L.133, T.135, D.219, G.221, T.222, T.223, L.224, Y.226, I.304

19 PLIP interactions:

19 interactions with chain A

Hydrophobic interactions: A:I.10, A:D.15, A:A.16, A:Y.79, A:Y.79, A:D.81, A:F.116, A:L.125, A:L.224
Hydrogen bonds: A:G.37, A:G.80, A:D.81, A:D.81, A:G.221, A:T.222, A:T.223, A:T.223, A:T.223
Water bridges: A:L.224

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	2 residues within 4Å: Chain A: G.181, S.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.182
SO4.3:	5 residues within 4Å: Chain A: S.213, I.214, D.215, P.228, N.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.215, A:N.303 Water bridges: A:N.303, A:N.303

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Coates, L. et al., The Structure of Endothiapepsin Complexed with the Gem-Diol Inhibitor Pd-135,040 at 1.37 A. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-06-12

Peptides

ENDOTHIAPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ENDOTHIAPEPSIN

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