SMTL ID : 3kzi.1

Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.215, H.272 Chain D: H.214, H.268 Ligands: BCT.59 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Metal complexes: A:H.215, A:H.272, D:H.214, D:H.268

35 x CLA: CHLOROPHYLL A(Non-covalent)

CLA.2: 26 residues within 4Å: Chain A: F.119, A.123, Y.147, P.150, S.153, A.154, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, V.205, F.206, T.286, A.287, I.290 Chain D: L.182 Chain N: F.17 Ligands: CLA.3, PHO.4, CLA.13, CLA.60 16 PLIP interactions: 13 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N, Hydrophobic interactions: A:F.119, A:A.123, A:M.183, A:F.186, A:Q.187, A:I.192, A:L.193, A:L.193, A:V.205, A:F.206, A:I.290, D:L.182, D:L.182, N:F.17 Hydrogen bonds: A:S.153 Metal complexes: A:H.198 CLA.3: 23 residues within 4Å: Chain A: T.45, V.49, A.154, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183 Chain D: M.198, V.201, A.202 Chain K: L.30 Chain N: F.10, I.14 Ligands: CLA.2, PHO.4, LMG.10, CLA.60, PL9.63, LMG.66 9 PLIP interactions: 2 interactions with chain N, 6 interactions with chain A, 1 interactions with chain D, Hydrophobic interactions: N:F.10, N:I.14, A:V.49, A:A.154, A:V.157, A:F.158, A:F.180, A:F.182, D:V.201 CLA.5: 21 residues within 4Å: Chain A: V.35, I.36, P.39, T.40, F.93, P.95, I.96, W.97, L.114, F.117, H.118, L.121 Chain H: V.8, Y.9, V.12, T.13, F.15 Ligands: BCR.8, DGD.37, CLA.44, LMG.73 16 PLIP interactions: 7 interactions with chain H, 9 interactions with chain A, Hydrophobic interactions: H:V.8, H:Y.9, H:V.12, H:V.12, H:F.15, H:F.15, A:I.36, A:T.40, A:F.93, A:L.121 Hydrogen bonds: H:Y.9, A:I.96 Salt bridges: A:H.118 pi-Stacking: A:H.118, A:H.118 Metal complexes: A:H.118 CLA.13: 18 residues within 4Å: Chain A: Q.199, V.202, A.203, F.206, W.278 Chain D: F.153, V.156, F.157, V.175, I.178, F.179, F.181, L.182 Ligands: CLA.2, DGD.56, CLA.60, PHO.61, LMG.65 11 PLIP interactions: 6 interactions with chain D, 5 interactions with chain A, Hydrophobic interactions: D:F.153, D:V.156, D:F.157, D:I.178, D:F.181, D:L.182, A:V.202, A:W.278 Hydrogen bonds: A:Q.199 pi-Stacking: A:F.206, A:F.206 CLA.14: 10 residues within 4Å: Chain B: W.185, P.187, F.190, A.204, I.207, V.208 Chain G: F.40, I.43 Ligands: CLA.15, BCR.86 8 PLIP interactions: 2 interactions with chain G, 6 interactions with chain B, Hydrophobic interactions: G:F.40, G:I.43, B:W.185, B:P.187, B:F.190, B:A.204, B:I.207, B:V.208 CLA.15: 28 residues within 4Å: Chain B: E.184, G.189, F.190, P.192, G.197, A.200, H.201, A.204, A.205, V.208, F.247, F.250, V.251 Chain D: L.158, I.159, L.162 Chain G: F.37, F.40, L.41, I.44, Y.48 Ligands: CLA.14, CLA.16, CLA.18, CLA.21, CLA.22, DGD.36, BCR.86 22 PLIP interactions: 3 interactions with chain D, 5 interactions with chain G, 14 interactions with chain B, Hydrophobic interactions: D:L.158, D:I.159, D:L.162, G:F.37, G:L.41, G:I.44, B:F.190, B:F.190, B:A.200, B:H.201, B:A.204, B:A.205, B:V.208, B:F.247, B:F.250, B:F.250, B:V.251 pi-Stacking: G:F.40, G:F.40, B:F.190 pi-Cation interactions: B:H.201 Metal complexes: B:H.201 CLA.16: 25 residues within 4Å: Chain B: R.68, L.69, A.146, L.149, C.150, F.153, M.166, V.198, H.201, H.202, A.244, F.247, A.248, V.251, V.252, T.255, T.262 Chain G: F.37 Ligands: CLA.15, CLA.17, CLA.18, CLA.19, CLA.22, CLA.23, BCR.86 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain G, Hydrophobic interactions: B:A.146, B:L.149, B:F.153, B:F.153, B:A.244, B:F.247, B:V.251, B:T.262, G:F.37, G:F.37 Hydrogen bonds: B:R.68, B:T.255 Salt bridges: B:R.68 pi-Stacking: B:H.202, B:H.202 pi-Cation interactions: B:H.201 Metal complexes: B:H.202 CLA.17: 23 residues within 4Å: Chain B: W.33, F.61, F.65, R.68, L.148, L.149, V.245, A.248, A.249, V.252, F.451, H.455, F.458, A.459, F.462 Ligands: CLA.16, CLA.18, CLA.20, CLA.23, CLA.24, CLA.25, CLA.26, CLA.28 23 PLIP interactions: 23 interactions with chain B, Hydrophobic interactions: B:W.33, B:F.61, B:F.65, B:L.148, B:L.149, B:V.245, B:A.248, B:A.249, B:V.252, B:V.252, B:F.451, B:F.458, B:F.458, B:F.458, B:F.458, B:F.458, B:F.462, B:F.462 Salt bridges: B:R.68 pi-Stacking: B:F.451, B:F.451, B:H.455 Metal complexes: B:H.455 CLA.18: 26 residues within 4Å: Chain B: T.27, V.30, A.31, W.33, A.34, V.62, F.65, M.66, R.68, L.69, V.96, H.100, L.103, G.147, C.150, A.205, G.209 Ligands: CLA.15, CLA.16, CLA.17, CLA.19, CLA.22, CLA.23, CLA.25, BCR.32, LMT.35 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:V.30, B:A.31, B:W.33, B:A.34, B:L.69, B:V.96 Salt bridges: B:R.68 Metal complexes: B:H.100 CLA.19: 22 residues within 4Å: Chain B: L.69, V.71, W.91, V.96, A.99, H.100, V.102, L.103, L.106, L.149, G.152, F.153, F.156, H.157, F.162, G.163, P.164 Ligands: CLA.16, CLA.18, CLA.29, BCR.32, LMT.35 20 PLIP interactions: 20 interactions with chain B, Hydrophobic interactions: B:L.69, B:V.71, B:W.91, B:W.91, B:W.91, B:V.96, B:A.99, B:V.102, B:L.103, B:L.103, B:L.106, B:L.149, B:F.153, B:F.153, B:F.156, B:F.162, B:F.162 pi-Stacking: B:H.157, B:H.157 Metal complexes: B:H.157 CLA.20: 24 residues within 4Å: Chain B: W.33, M.37, Y.40, Q.58, G.59, F.61, F.325, R.326, T.327, G.328, P.329, W.450, F.451, A.454 Chain D: M.199, M.281 Chain K: F.35 Chain L: F.14 Ligands: CLA.17, CLA.26, BCR.30, BCR.31, LMG.33, DGD.34 13 PLIP interactions: 11 interactions with chain B, 1 interactions with chain K, 1 interactions with chain L, Hydrophobic interactions: B:Y.40, B:F.61, B:F.61, B:F.325, B:W.450, B:A.454, K:F.35, L:F.14 Hydrogen bonds: B:Y.40, B:G.328 pi-Stacking: B:F.61, B:F.61, B:W.450 CLA.21: 23 residues within 4Å: Chain B: T.236, S.239, S.240, A.243, F.246, F.247, F.463, H.466, L.474 Chain D: L.116, F.120, I.123, M.126, L.127, F.130 Chain G: L.42, L.45 Ligands: CLA.15, CLA.22, CLA.23, DGD.36, CLA.62, SQD.67 21 PLIP interactions: 2 interactions with chain G, 11 interactions with chain D, 8 interactions with chain B, Hydrophobic interactions: G:L.42, G:L.45, D:L.116, D:F.120, D:F.120, D:F.120, D:I.123, D:I.123, D:M.126, D:L.127, D:L.127, D:L.127, D:F.130, B:A.243, B:F.246, B:F.247, B:F.463 Salt bridges: B:H.466 pi-Stacking: B:H.466, B:H.466 Metal complexes: B:H.466 CLA.22: 25 residues within 4Å: Chain B: F.139, V.208, A.212, F.215, H.216, V.219, R.220, P.221, P.222, L.225, L.229 Chain G: T.26, T.27, L.29, M.30, F.33, M.34, L.45 Ligands: CLA.15, CLA.16, CLA.18, CLA.21, CLA.23, SQD.67, BCR.86 18 PLIP interactions: 6 interactions with chain G, 12 interactions with chain B, Hydrophobic interactions: G:T.26, G:L.29, G:M.30, G:F.33, G:L.45, B:F.139, B:F.139, B:V.208, B:A.212, B:F.215, B:L.225, B:L.229, B:L.229 Hydrogen bonds: G:T.26 Salt bridges: B:H.216 pi-Stacking: B:H.216, B:H.216 Metal complexes: B:H.216 CLA.23: 22 residues within 4Å: Chain B: L.19, L.135, M.138, F.139, H.142, L.143, L.145, A.146, L.229, M.231, I.234, T.236, V.237, S.240, S.241 Ligands: CLA.16, CLA.17, CLA.18, CLA.21, CLA.22, CLA.25, CLA.28 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:L.19, B:L.135, B:L.135, B:M.138, B:F.139, B:F.139, B:L.145, B:A.146, B:L.229, B:M.231, B:I.234, B:T.236, B:V.237 Hydrogen bonds: B:H.142 CLA.24: 22 residues within 4Å: Chain B: W.5, Y.6, R.7, V.8, H.9, L.238, I.242, L.461, F.462, F.464, G.465, W.468, H.469, R.472, F.479 Chain L: F.21 Ligands: LMG.10, CLA.17, CLA.25, CLA.26, CLA.27, LMG.33 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain L, Hydrophobic interactions: B:W.5, B:W.5, B:H.9, B:I.242, B:F.462, B:F.462, B:F.462, B:F.464, B:F.464, B:W.468, L:F.21 Hydrogen bonds: B:H.9 Salt bridges: B:H.9, B:R.472 pi-Stacking: B:W.468 Metal complexes: B:H.469 CLA.25: 19 residues within 4Å: Chain B: H.9, L.19, H.23, H.26, T.27, I.234, E.235, V.237, L.238, S.241, I.242, V.245 Ligands: CLA.17, CLA.18, CLA.23, CLA.24, CLA.26, CLA.27, CLA.28 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:H.9, B:L.19, B:H.26, B:T.27, B:E.235, B:V.237, B:L.238, B:L.238, B:L.238 Hydrogen bonds: B:S.241 Salt bridges: B:H.23 pi-Stacking: B:H.26 pi-Cation interactions: B:H.23, B:H.23 Metal complexes: B:H.23 CLA.26: 16 residues within 4Å: Chain B: H.9, H.26, V.30, W.33, L.461, F.462 Chain L: F.14 Ligands: CLA.17, CLA.20, CLA.24, CLA.25, CLA.27, BCR.30, BCR.31, LMG.33, DGD.34 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain L, Hydrophobic interactions: B:V.30, B:V.30, B:W.33, B:W.33, B:L.461, B:F.462, B:F.462, B:F.462, L:F.14 Salt bridges: B:H.9 pi-Stacking: B:H.26, B:H.26 pi-Cation interactions: B:H.26 Metal complexes: B:H.26 CLA.27: 15 residues within 4Å: Chain B: L.3, V.8, H.9, V.11, A.22, L.29, W.115 Chain K: V.10 Chain L: F.21, L.25 Ligands: CLA.24, CLA.25, CLA.26, BCR.30, DGD.34 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain L, Hydrophobic interactions: B:V.11, B:A.22, B:L.29, B:W.115, B:W.115, L:F.21, L:L.25 pi-Stacking: B:H.9 Metal complexes: B:H.9 CLA.28: 15 residues within 4Å: Chain B: I.20, H.23, L.24, L.133, M.138, I.141, H.142, L.145 Chain G: L.13, N.14 Ligands: CLA.17, CLA.23, CLA.25, CLA.29, BCR.32 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain G, Hydrophobic interactions: B:I.20, B:L.133, B:I.141, B:L.145, G:L.13, G:L.13, G:N.14 pi-Stacking: B:H.142 pi-Cation interactions: B:H.142 Metal complexes: B:H.142 CLA.29: 11 residues within 4Å: Chain B: I.20, L.24, A.110, W.113, H.114 Chain G: T.4, L.6, G.7 Ligands: CLA.19, CLA.28, BCR.32 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain G, Hydrophobic interactions: B:I.20, B:L.24, B:A.110, B:W.113, B:W.113, G:L.6, G:L.6 pi-Stacking: B:W.113, B:W.113, B:H.114, B:H.114 Metal complexes: B:H.114 CLA.40: 20 residues within 4Å: Chain C: L.83, L.156, G.159, A.160, L.163, W.211, I.212, V.221, H.225, I.228, M.270, I.273, F.277, V.284, Y.285 Ligands: CLA.41, CLA.42, CLA.45, CLA.46, BCR.53 15 PLIP interactions: 15 interactions with chain C, Hydrophobic interactions: C:L.156, C:A.160, C:L.163, C:W.211, C:I.212, C:I.228, C:M.270, C:I.273, C:F.277, C:F.277, C:V.284, C:Y.285 pi-Stacking: C:H.225, C:H.225 Metal complexes: C:H.225 CLA.41: 25 residues within 4Å: Chain C: W.51, L.76, H.79, G.159, L.162, L.163, A.165, K.166, F.170, L.267, M.270, G.271, A.274, V.278, Y.285, H.418, L.421, A.422, F.425 Ligands: CLA.40, CLA.42, CLA.43, CLA.48, CLA.50, CLA.78 16 PLIP interactions: 16 interactions with chain C, Hydrophobic interactions: C:L.76, C:L.162, C:L.163, C:A.165, C:K.166, C:F.170, C:F.170, C:L.267, C:M.270, C:A.274, C:F.425 Hydrogen bonds: C:Y.285 Salt bridges: C:H.79, C:H.79 pi-Stacking: C:H.418 Metal complexes: C:H.418 CLA.42: 20 residues within 4Å: Chain C: A.45, I.48, V.49, W.51, A.52, T.56, L.76, H.79, I.80, L.83, W.85, V.102, H.106, M.270 Ligands: CLA.40, CLA.41, CLA.48, CLA.50, LMG.57, CLA.78 11 PLIP interactions: 11 interactions with chain C, Hydrophobic interactions: C:I.48, C:V.49, C:W.51, C:A.52, C:L.83, C:W.85, C:V.102 Salt bridges: C:H.79 pi-Stacking: C:H.106, C:H.106 Metal complexes: C:H.106 CLA.43: 23 residues within 4Å: Chain A: V.281, F.285 Chain C: W.51, M.55, F.58, Q.72, G.73, I.75, L.392, W.413, L.414, S.417, H.418 Chain J: P.17, V.18, V.21 Ligands: LHG.9, CLA.41, CLA.47, DGD.55, DGD.56, LMG.75, CLA.78 12 PLIP interactions: 2 interactions with chain A, 2 interactions with chain J, 8 interactions with chain C, Hydrophobic interactions: A:V.281, A:F.285, J:P.17, J:V.21, C:F.58, C:I.75, C:L.392, C:W.413, C:W.413, C:W.413 pi-Stacking: C:W.413, C:W.413 CLA.44: 24 residues within 4Å: Chain A: F.33, L.121, M.127, G.128, W.131 Chain C: F.252, I.253, S.261, Y.262, G.265, A.266, M.269, H.429, L.430, A.433, R.437 Chain H: V.16, F.19, F.23 Ligands: CLA.5, DGD.37, CLA.46, BCR.53, DGD.54 17 PLIP interactions: 6 interactions with chain C, 4 interactions with chain H, 7 interactions with chain A, Hydrophobic interactions: C:L.430, H:V.16, H:V.16, H:F.19, H:F.19, A:F.33, A:L.121, A:L.121, A:W.131, A:W.131 Hydrogen bonds: C:S.261 Salt bridges: C:R.437 pi-Stacking: C:H.429, C:H.429, A:W.131, A:W.131 Metal complexes: C:H.429 CLA.45: 19 residues within 4Å: Chain C: L.149, L.153, L.201, I.231, C.232, G.235, W.238, H.239, T.242, T.243, P.244, F.245, W.247, A.248, F.252 Ligands: DGD.37, CLA.40, CLA.46, BCR.53 12 PLIP interactions: 12 interactions with chain C, Hydrophobic interactions: C:L.153, C:L.153, C:L.201, C:I.231, C:W.247, C:A.248, C:F.252 Hydrogen bonds: C:F.245 pi-Stacking: C:W.238, C:H.239, C:H.239 Metal complexes: C:H.239 CLA.46: 20 residues within 4Å: Chain C: M.145, L.149, H.152, L.153, L.156, I.228, C.232, W.247, F.252, W.254, Y.259, Y.262, S.263, A.266, L.267 Ligands: CLA.40, CLA.44, CLA.45, CLA.48, BCR.53 14 PLIP interactions: 14 interactions with chain C, Hydrophobic interactions: C:M.145, C:L.156, C:I.228, C:W.247, C:F.252, C:F.252, C:W.254, C:Y.259, C:Y.259, C:Y.262, C:A.266, C:L.267 Hydrogen bonds: C:H.152 Salt bridges: C:H.152 CLA.47: 25 residues within 4Å: Chain C: W.23, W.24, A.25, G.26, N.27, A.28, E.257, L.260, L.264, F.424, F.425, V.427, G.428, W.431, H.432, R.435 Chain J: F.28 Ligands: LHG.9, SQD.38, CLA.43, CLA.48, CLA.49, DGD.55, LMG.75, CLA.78 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain J, Hydrophobic interactions: C:N.27, C:A.28, C:L.260, C:L.264, C:F.425, C:F.425, C:V.427, C:W.431, J:F.28 Hydrogen bonds: C:N.27, C:N.27 pi-Stacking: C:W.431 Metal complexes: C:H.432 CLA.48: 25 residues within 4Å: Chain C: N.27, L.30, I.31, L.37, A.40, H.41, H.44, Y.137, W.139, H.152, V.155, G.256, E.257, Y.259, L.260, S.263, L.264, L.267 Ligands: CLA.41, CLA.42, CLA.46, CLA.47, CLA.49, CLA.50, CLA.78 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:N.27, C:L.30, C:I.31, C:L.37, C:A.40, C:H.44, C:W.139, C:W.139, C:W.139, C:H.152, C:V.155, C:Y.259, C:L.260 Hydrogen bonds: C:S.263 pi-Stacking: C:H.44 pi-Cation interactions: C:H.41, C:H.41 Metal complexes: C:H.41 CLA.49: 34 residues within 4Å: Chain C: Q.16, W.23, G.26, N.27, R.29, L.30, L.33, K.36, A.40, A.111, G.114, F.115, V.118, A.121, I.122 Chain J: F.23, L.24, A.27, F.28, W.30, Q.31, R.37 Chain Q: I.35, L.39, N.45, L.46 Chain S: M.19, V.20, V.23, P.24 Ligands: CLA.47, CLA.48, BCR.52, CLA.78 19 PLIP interactions: 7 interactions with chain J, 8 interactions with chain C, 3 interactions with chain S, 1 interactions with chain Q, Hydrophobic interactions: J:F.23, J:L.24, J:A.27, J:F.28, C:K.36, C:A.40, C:F.115, C:F.115, C:V.118, C:A.121, S:V.20, S:V.23, S:P.24, Q:L.39 Hydrogen bonds: J:R.37, C:R.29 pi-Stacking: J:W.30, J:W.30 Salt bridges: C:K.36 CLA.50: 18 residues within 4Å: Chain C: L.38, H.41, V.42, A.45, L.113, F.135, I.148, F.151, H.152, V.155, I.158, G.159, L.162 Ligands: CLA.41, CLA.42, CLA.48, CLA.51, BCR.87 14 PLIP interactions: 14 interactions with chain C, Hydrophobic interactions: C:L.38, C:H.41, C:I.148, C:I.148, C:I.148, C:F.151, C:F.151, C:F.151, C:F.151, C:F.151, C:I.158, C:L.162 pi-Stacking: C:H.152 Metal complexes: C:H.152 CLA.51: 11 residues within 4Å: Chain C: L.38, V.42, V.112, L.113, F.115, G.116, Y.119, H.120, F.135 Ligands: CLA.50, BCR.87 10 PLIP interactions: 10 interactions with chain C, Hydrophobic interactions: C:L.38, C:V.42, C:V.42, C:L.113, C:F.115, C:F.115, C:Y.119, C:F.135, C:F.135 Metal complexes: C:H.120 CLA.60: 28 residues within 4Å: Chain A: M.183, F.206 Chain D: L.45, W.48, L.122, P.149, V.152, F.153, S.155, V.156, F.181, L.182, F.185, Q.186, W.191, T.192, H.197, V.201, V.204, L.279, S.282, A.283, V.286 Ligands: CLA.2, CLA.3, CLA.13, PHO.61, LMG.65 16 PLIP interactions: 16 interactions with chain D, Hydrophobic interactions: D:W.48, D:L.122, D:P.149, D:V.152, D:F.153, D:F.181, D:F.185, D:Q.186, D:V.201, D:V.204, D:V.204, D:L.279, D:L.279 pi-Stacking: D:W.191, D:H.197 Metal complexes: D:H.197 CLA.62: 23 residues within 4Å: Chain D: I.35, L.36, P.39, L.43, L.89, L.90, L.91, L.92, W.93, W.104, T.112, F.113, H.117 Chain G: V.39, E.46 Chain R: G.12, L.13, G.16, A.17 Ligands: CLA.21, BCR.64, DGD.68, BCR.86 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain R, Hydrophobic interactions: D:L.36, D:P.39, D:L.43, R:L.13 Hydrogen bonds: D:L.92 Salt bridges: D:H.117 pi-Stacking: D:F.113, D:F.113, D:H.117, D:H.117 Metal complexes: D:H.117 CLA.78: 18 residues within 4Å: Chain C: N.27, H.44, L.47, I.48, W.51, L.267, F.424, F.425 Chain J: P.20, V.21, L.24 Ligands: LHG.9, CLA.41, CLA.42, CLA.43, CLA.47, CLA.48, CLA.49 15 PLIP interactions: 2 interactions with chain J, 13 interactions with chain C, Hydrophobic interactions: J:P.20, J:V.21, C:L.47, C:I.48, C:I.48, C:I.48, C:W.51, C:W.51, C:L.267, C:F.424, C:F.425, C:F.425 Hydrogen bonds: C:N.27 pi-Cation interactions: C:H.44 Metal complexes: C:H.44

2 x PHO: PHEOPHYTIN A(Non-covalent)

PHO.4: 27 residues within 4Å: Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, L.174, G.175, P.279, V.280, V.283 Chain D: L.205, A.208, L.209, A.212, I.213, W.253, F.257 Ligands: CLA.2, CLA.3, PL9.63, LMG.66 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:A.44, A:F.48, A:F.48, A:I.115, A:F.119, A:F.119, A:A.146, A:Y.147, A:P.150, A:L.174, A:L.174, D:L.205, D:L.209, D:A.212 Hydrogen bonds: A:Y.126, A:Q.130, A:Y.147 PHO.61: 24 residues within 4Å: Chain A: F.206, L.210, M.214, L.258, I.259 Chain D: L.37, A.41, A.44, W.48, G.118, G.121, L.122, F.125, N.142, A.145, F.146, A.148, P.149, F.173, G.174, P.275, L.279 Ligands: CLA.13, CLA.60 19 PLIP interactions: 17 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:L.37, D:A.41, D:A.44, D:W.48, D:W.48, D:W.48, D:L.122, D:F.125, D:A.145, D:A.148, D:P.149, D:F.173, D:L.279, D:L.279, A:F.206, A:L.210 Hydrogen bonds: D:N.142 pi-Stacking: D:F.146, D:F.146

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 8 residues within 4Å: Chain A: M.214, H.215, L.218, V.219, Y.246, I.248, A.251, L.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.246 Salt bridges: A:H.215

1 x OEC: OXYGEN EVOLVING SYSTEM(Covalent)

OEC.7: 8 residues within 4Å: Chain A: Q.165, D.170, E.189, H.332, E.333, D.342, A.344 Chain C: E.342 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain C Metal complexes: A:D.170, A:D.170, A:E.189, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, A:A.344, C:E.342, C:E.342, C:E.342

11 x BCR: BETA-CAROTENE(Non-covalent)

BCR.8: 18 residues within 4Å: Chain A: G.34, V.35, I.38, P.39, L.42, A.43, I.46, A.51, A.54, A.55, I.96, W.105, L.106, P.111 Chain H: F.15 Ligands: CLA.5, DGD.11, LMT.12 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain H Hydrophobic interactions: A:V.35, A:I.38, A:I.38, A:P.39, A:P.39, A:L.42, A:L.42, A:A.43, A:A.51, A:I.96, A:W.105, A:L.106, A:L.106, A:P.111, H:F.15 BCR.30: 14 residues within 4Å: Chain B: A.21, M.25, L.29, A.111, C.112, W.115 Chain L: L.6, I.9, L.13 Ligands: CLA.20, CLA.26, CLA.27, BCR.31, DGD.34 9 PLIP interactions: 4 interactions with chain L, 5 interactions with chain B Hydrophobic interactions: L:L.6, L:L.6, L:I.9, L:L.13, B:M.25, B:L.29, B:W.115, B:W.115, B:W.115 BCR.31: 11 residues within 4Å: Chain B: L.29, G.32, W.33, S.36, I.101, S.104, G.105 Ligands: CLA.20, CLA.26, BCR.30, DGD.34 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.29, B:W.33, B:I.101 BCR.32: 9 residues within 4Å: Chain B: L.103, L.106, L.109, Y.117 Ligands: CLA.18, CLA.19, CLA.28, CLA.29, LMT.35 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.103, B:L.106, B:Y.117 BCR.52: 26 residues within 4Å: Chain C: A.43, H.44, G.46, L.47, F.50, V.104, L.107, I.108, S.110, A.111, G.114, A.121 Chain J: Y.6, F.9, L.12, F.23, L.26, A.27, W.30 Chain S: L.9, V.13, S.16, V.20 Ligands: CLA.49, BCR.77, BCR.87 20 PLIP interactions: 3 interactions with chain S, 9 interactions with chain J, 8 interactions with chain C Hydrophobic interactions: S:L.9, S:V.13, S:V.20, J:Y.6, J:F.9, J:L.12, J:F.23, J:F.23, J:F.23, J:L.26, J:A.27, J:W.30, C:A.43, C:L.47, C:V.104, C:L.107, C:L.107, C:I.108, C:A.111, C:A.121 BCR.53: 20 residues within 4Å: Chain C: I.197, F.198, Y.200, L.201, I.212, V.215, D.220, V.221, G.224, H.225, I.228, F.252, M.269 Chain H: V.20, F.23, L.24 Ligands: CLA.40, CLA.44, CLA.45, CLA.46 11 PLIP interactions: 9 interactions with chain C, 2 interactions with chain H Hydrophobic interactions: C:I.197, C:F.198, C:L.201, C:L.201, C:I.212, C:V.215, C:V.215, C:I.228, C:F.252, H:F.23, H:L.24 BCR.64: 20 residues within 4Å: Chain D: Y.42, L.43, G.46, G.47, L.49, T.50, F.113 Chain F: P.28, T.29, F.32, L.33, I.36 Chain I: V.21, V.25, F.28 Ligands: LHG.39, CLA.62, LMG.65, DGD.68, BCR.76 13 PLIP interactions: 6 interactions with chain F, 5 interactions with chain D, 2 interactions with chain I Hydrophobic interactions: F:P.28, F:F.32, F:F.32, F:L.33, F:L.33, F:I.36, D:Y.42, D:L.43, D:L.49, D:L.49, D:F.113, I:V.25, I:F.28 BCR.76: 11 residues within 4Å: Chain I: V.21, I.22, G.26, F.29, Y.30, Y.33 Ligands: SQD.38, LHG.39, DGD.55, BCR.64, LMG.75 7 PLIP interactions: 7 interactions with chain I Hydrophobic interactions: I:V.21, I:I.22, I:F.29, I:F.29, I:Y.30, I:Y.30, I:Y.33 BCR.77: 18 residues within 4Å: Chain I: A.14, T.15, G.18, M.19 Chain J: L.12, L.16, I.19, L.22, F.23, F.28, V.29 Chain Q: I.28, G.29, G.32 Chain S: V.13, S.16, F.17 Ligands: BCR.52 15 PLIP interactions: 2 interactions with chain S, 10 interactions with chain J, 1 interactions with chain Q, 2 interactions with chain I Hydrophobic interactions: S:V.13, S:F.17, J:L.12, J:L.16, J:I.19, J:I.19, J:L.22, J:L.22, J:F.23, J:F.28, J:F.28, J:V.29, Q:I.28, I:A.14, I:T.15 BCR.86: 12 residues within 4Å: Chain G: M.34, F.37, F.40 Chain R: T.1, I.2, L.6, F.10 Ligands: CLA.14, CLA.15, CLA.16, CLA.22, CLA.62 9 PLIP interactions: 5 interactions with chain G, 4 interactions with chain R Hydrophobic interactions: G:M.34, G:F.37, G:F.37, G:F.40, G:F.40, R:I.2, R:L.6, R:L.6, R:F.10 BCR.87: 15 residues within 4Å: Chain C: V.104, I.108, S.109, V.112, L.113, F.135 Chain J: Y.6 Chain S: V.51, V.54, G.55, N.58 Ligands: CLA.50, CLA.51, BCR.52, LMG.57 10 PLIP interactions: 7 interactions with chain C, 3 interactions with chain S Hydrophobic interactions: C:V.104, C:I.108, C:V.112, C:V.112, C:L.113, C:F.135, C:F.135, S:V.51, S:V.54, S:N.58

2 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)(Non-functional Binders)

LHG.9: 18 residues within 4Å: Chain A: R.140, W.142, F.273, A.277, V.281 Chain C: W.24, F.424, W.431, R.435 Chain D: E.219, A.229, S.230, T.231, F.232 Ligands: SQD.38, CLA.43, CLA.47, CLA.78 11 PLIP interactions: 5 interactions with chain A, 3 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: A:F.273, A:F.273, A:F.273, A:V.281, C:W.24, C:F.424, C:F.424 Salt bridges: A:R.140 Hydrogen bonds: D:A.229, D:S.230, D:T.231 LHG.39: 4 residues within 4Å: Ligands: SQD.38, DGD.55, BCR.64, BCR.76 No protein-ligand interaction detected (PLIP)

8 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)(Non-functional Binders)

LMG.10: 23 residues within 4Å: Chain A: S.232, N.234, Y.235 Chain B: P.4, W.5, Y.6 Chain D: W.266, F.270, F.273 Chain K: E.11, N.13, S.16, G.20, L.23, I.24, V.26 Chain L: P.18, F.21, L.22 Ligands: CLA.3, CLA.24, PL9.63, LMG.66 12 PLIP interactions: 4 interactions with chain K, 3 interactions with chain L, 2 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: K:L.23, K:I.24, L:P.18, L:F.21, L:L.22, D:W.266, D:F.270, D:F.273 Hydrogen bonds: K:E.11, K:S.16, A:N.234, A:Y.235 LMG.33: 19 residues within 4Å: Chain A: A.233 Chain B: W.5, Y.6, R.7, F.464, W.468, F.479 Chain D: R.139, Y.141, F.269, L.272, V.276, W.280 Chain L: F.14, P.18 Ligands: CLA.20, CLA.24, CLA.26, DGD.34 10 PLIP interactions: 4 interactions with chain B, 2 interactions with chain L, 4 interactions with chain D Hydrophobic interactions: B:W.5, B:F.464, L:F.14, L:P.18, D:L.272, D:V.276 Hydrogen bonds: B:Y.6, B:R.7, D:R.139, D:R.139 LMG.57: 9 residues within 4Å: Chain C: W.85, F.97, P.98, V.101, V.102, V.105 Chain S: F.59 Ligands: CLA.42, BCR.87 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain S Hydrophobic interactions: C:F.97, C:P.98, C:V.101, C:V.102, C:V.105, C:V.105, S:F.59 LMG.65: 18 residues within 4Å: Chain D: Y.67, C.71, N.72, F.73 Chain F: L.25, T.29, I.36, M.39, Q.40 Chain I: F.28, G.31, A.32, G.37 Ligands: CLA.13, SQD.38, DGD.56, CLA.60, BCR.64 6 PLIP interactions: 2 interactions with chain I, 2 interactions with chain F, 2 interactions with chain D Hydrogen bonds: I:G.31, I:G.37, F:Q.40 Hydrophobic interactions: F:L.25, D:F.73, D:F.73 LMG.66: 21 residues within 4Å: Chain D: I.259, A.260, F.261, S.262, N.263, W.266, F.270 Chain K: T.15, S.16, L.19, L.22, V.26 Chain N: F.10, I.13, F.17, A.20, I.21 Ligands: CLA.3, PHO.4, LMG.10, PL9.63 18 PLIP interactions: 6 interactions with chain K, 8 interactions with chain N, 4 interactions with chain D Hydrophobic interactions: K:L.19, K:L.22, K:L.22, K:V.26, N:F.10, N:I.13, N:F.17, N:F.17, N:F.17, N:F.17, N:A.20, N:I.21, D:I.259, D:F.270 Hydrogen bonds: K:T.15, K:S.16, D:A.260, D:S.262 LMG.73: 3 residues within 4Å: Ligands: CLA.5, DGD.11, LMT.74 No protein-ligand interaction detected (PLIP) LMG.75: 9 residues within 4Å: Chain C: H.62 Chain I: I.22 Chain J: V.21, L.22 Chain Q: I.25 Ligands: CLA.43, CLA.47, DGD.55, BCR.76 5 PLIP interactions: 1 interactions with chain I, 1 interactions with chain C, 2 interactions with chain J, 1 interactions with chain Q Hydrophobic interactions: I:I.22, J:V.21, J:L.22, Q:I.25 Salt bridges: C:H.62 LMG.81: 6 residues within 4Å: Chain L: I.23, E.30, S.31, Q.32, Q.33 Ligands: SQD.80 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:I.23 Hydrogen bonds: L:E.30, L:E.30

8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)

DGD.11: 8 residues within 4Å: Chain A: I.46, I.50, L.102 Ligands: BCR.8, LMT.12, LMG.73, LMT.74, LMT.83 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.46, A:I.46 DGD.34: 19 residues within 4Å: Chain B: T.327, K.332, L.437, A.454, L.461 Chain D: I.284 Chain K: F.35 Chain L: N.4, L.6, A.10, L.13, F.14, V.17 Ligands: CLA.20, CLA.26, CLA.27, BCR.30, BCR.31, LMG.33 11 PLIP interactions: 5 interactions with chain L, 1 interactions with chain D, 5 interactions with chain B Hydrophobic interactions: L:A.10, L:L.13, L:L.13, L:V.17, D:I.284, B:A.454, B:L.461 Hydrogen bonds: L:N.4, B:T.327, B:K.332, B:L.437 DGD.36: 24 residues within 4Å: Chain B: Y.193, F.250, G.254, Y.258, Y.273, S.277, F.463 Chain D: G.86, H.87, F.120, I.150, V.154, I.159, L.162, S.165, A.290 Chain G: L.45, Y.48, N.49, V.59, S.60, W.61 Ligands: CLA.15, CLA.21 16 PLIP interactions: 8 interactions with chain D, 6 interactions with chain B, 2 interactions with chain G Hydrophobic interactions: D:F.120, D:I.150, D:V.154, D:I.159, D:A.290, B:F.250, B:F.463, G:L.45 Hydrogen bonds: D:H.87, D:H.87, B:Y.193, B:Y.193, B:S.277, B:S.277, G:V.59 Salt bridges: D:H.87 DGD.37: 22 residues within 4Å: Chain A: F.93, P.95, W.97, E.98, F.117, L.121, F.155 Chain C: L.201, L.202, K.203, S.204, P.205, F.206, W.211, M.269, F.272 Chain H: K.5, Y.9 Ligands: CLA.5, CLA.44, CLA.45, DGD.54 9 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A, 3 interactions with chain H Hydrophobic interactions: C:F.206, C:W.211, C:W.211, C:F.272, A:L.121 Hydrogen bonds: A:W.97, H:K.5, H:Y.9 Salt bridges: H:K.5 DGD.54: 25 residues within 4Å: Chain A: A.152, F.155, I.160, I.163 Chain C: P.205, F.206, G.207, G.208, G.210, W.211, V.213, V.215, F.272, I.273, C.276, F.280, N.281, N.282, T.283, D.348, R.350, F.423, L.426 Ligands: DGD.37, CLA.44 17 PLIP interactions: 14 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:F.272, C:F.272, C:F.272, C:I.273, C:F.423, A:F.155, A:I.160, A:I.163 Hydrogen bonds: C:P.205, C:F.206, C:G.208, C:G.208, C:F.280, C:N.282, C:T.283, C:T.283, C:R.350 DGD.55: 23 residues within 4Å: Chain A: F.197, T.292, L.297 Chain C: Y.70, E.71, Q.72, G.73, S.394, N.406, F.407, V.408, W.413, T.416, V.420 Chain I: F.29, Y.33 Ligands: SQD.38, LHG.39, CLA.43, CLA.47, DGD.56, LMG.75, BCR.76 10 PLIP interactions: 6 interactions with chain C, 3 interactions with chain A, 1 interactions with chain I Hydrophobic interactions: C:W.413, A:F.197, A:T.292, A:L.297, I:F.29 Hydrogen bonds: C:Y.70, C:S.394, C:N.406, C:V.408, C:W.413 DGD.56: 28 residues within 4Å: Chain A: L.200, A.203, W.278, V.281, F.285, F.300, F.302, S.305 Chain C: L.392, N.393, S.394, V.395, N.403, S.404, V.405, N.406 Chain I: F.29, A.32, Y.33, G.37, S.38, S.39, L.40 Chain P: Q.34 Ligands: CLA.13, CLA.43, DGD.55, LMG.65 18 PLIP interactions: 7 interactions with chain C, 8 interactions with chain A, 3 interactions with chain I Hydrophobic interactions: C:L.392, A:L.200, A:A.203, A:W.278, A:W.278, A:V.281, A:V.281, A:F.300, I:F.29 Hydrogen bonds: C:N.393, C:S.394, C:S.404, C:S.404, C:V.405, C:N.406, A:S.305, I:G.37, I:S.39 DGD.68: 7 residues within 4Å: Chain D: F.101, R.103 Chain E: V.45 Chain F: H.23 Ligands: CLA.62, BCR.64, SQD.71 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:F.101, E:V.45 Hydrogen bonds: D:R.103

7 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)

LMT.12: 6 residues within 4Å: Chain A: A.54, D.103 Chain M: K.69 Ligands: BCR.8, DGD.11, LMT.83 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain M Hydrophobic interactions: A:A.54 Hydrogen bonds: A:D.103, M:K.69 LMT.35: 5 residues within 4Å: Chain B: W.91, L.149 Ligands: CLA.18, CLA.19, BCR.32 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.91, B:L.149 LMT.58: 8 residues within 4Å: Chain B: K.227, A.228 Chain D: D.19, D.20, K.23 Chain G: A.31, M.34 Ligands: SQD.67 7 PLIP interactions: 2 interactions with chain B, 4 interactions with chain D, 1 interactions with chain G Hydrophobic interactions: B:A.228, G:A.31 Hydrogen bonds: B:K.227, D:D.20, D:D.20, D:K.23 Salt bridges: D:K.23 LMT.69: 6 residues within 4Å: Chain D: L.92, W.93, Q.98, G.99 Chain R: K.7, I.11 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain R Hydrophobic interactions: D:L.92 Hydrogen bonds: D:Q.98 Salt bridges: R:K.7 LMT.74: 6 residues within 4Å: Chain A: A.100 Chain H: M.1, L.4 Chain M: K.69 Ligands: DGD.11, LMG.73 3 PLIP interactions: 3 interactions with chain M Hydrogen bonds: M:K.69, M:K.69 Salt bridges: M:K.69 LMT.83: 2 residues within 4Å: Ligands: DGD.11, LMT.12 No protein-ligand interaction detected (PLIP) LMT.84: 4 residues within 4Å: Chain L: M.1, L.8 Chain N: M.1, F.8 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain N Hydrophobic interactions: L:L.8, N:F.8 Hydrogen bonds: L:M.1

4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)

SQD.38: 13 residues within 4Å: Chain A: S.270, F.273 Chain C: A.22, W.24 Chain D: F.232, R.233 Chain J: A.25 Ligands: LHG.9, LHG.39, CLA.47, DGD.55, LMG.65, BCR.76 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A, 1 interactions with chain J Hydrogen bonds: D:R.233, A:S.270 Salt bridges: D:R.233 Hydrophobic interactions: A:F.273, J:A.25 SQD.67: 12 residues within 4Å: Chain B: K.227, A.228, R.230 Chain D: D.19, K.23, W.32, R.134, L.135 Chain R: F.24 Ligands: CLA.21, CLA.22, LMT.58 11 PLIP interactions: 1 interactions with chain R, 4 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: R:F.24, D:W.32, D:W.32, D:W.32, D:W.32 Hydrogen bonds: B:K.227 Salt bridges: B:R.230, B:R.230, B:R.230, D:K.23, D:K.23 SQD.71: 10 residues within 4Å: Chain D: W.21, R.24, R.26 Chain F: P.13, F.15, T.16, V.17, W.19 Chain R: I.30 Ligands: DGD.68 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain D Hydrophobic interactions: F:V.17, F:W.19, D:W.21 Hydrogen bonds: F:F.15 Salt bridges: D:R.24, D:R.26 SQD.80: 6 residues within 4Å: Chain K: R.14, L.21 Chain N: A.15, L.16, F.19 Ligands: LMG.81 8 PLIP interactions: 5 interactions with chain N, 3 interactions with chain K Hydrophobic interactions: N:A.15, N:L.16, N:F.19, N:F.19, N:F.19, K:L.21 Hydrogen bonds: K:R.14, K:R.14

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.59: 10 residues within 4Å: Chain A: H.215, V.219, E.244, Y.246, H.272 Chain D: H.214, Y.244, K.264, H.268 Ligands: FE2.1 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:Y.244, D:Y.244, D:K.264, A:Y.246

1 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)

PL9.63: 27 residues within 4Å: Chain A: F.48, F.52, I.53, I.77 Chain D: M.199, A.202, L.209, L.210, I.213, H.214, T.217, M.246, W.253, F.257, A.260, F.261, L.267, V.274 Chain K: V.26, L.27, L.29 Chain N: V.7, F.10 Ligands: CLA.3, PHO.4, LMG.10, LMG.66 28 PLIP interactions: 4 interactions with chain K, 5 interactions with chain A, 15 interactions with chain D, 4 interactions with chain N Hydrophobic interactions: K:V.26, K:V.26, K:L.27, K:L.29, A:F.48, A:F.52, A:I.53, A:I.77, A:I.77, D:A.202, D:L.209, D:L.209, D:I.213, D:T.217, D:W.253, D:F.257, D:F.261, D:F.261, D:L.267, D:V.274, D:V.274, N:V.7, N:F.10, N:F.10, N:F.10 Hydrogen bonds: D:H.214, D:F.261 pi-Stacking: D:F.261

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.70: 18 residues within 4Å: Chain E: R.7, F.9, I.12, I.13, R.17, Y.18, H.22, T.25, I.26, L.29 Chain F: I.14, F.15, R.18, W.19, H.23, A.26, V.27, I.30 20 PLIP interactions: 11 interactions with chain E, 9 interactions with chain F, Hydrophobic interactions: E:I.12, E:I.13, E:T.25, E:I.26, E:L.29, F:F.15, F:W.19, F:A.26, F:V.27, F:I.30, F:I.30 Salt bridges: E:R.7, E:R.17, F:R.18 pi-Stacking: E:Y.18, E:H.22, E:H.22, F:H.23, F:H.23 Metal complexes: E:H.22 HEM.85: 21 residues within 4Å: Chain C: A.381 Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, L.54, L.59, A.62, Y.75, M.76, T.81, Y.82, H.92, M.104, I.115, I.119 18 PLIP interactions: 17 interactions with chain P, 1 interactions with chain C, Hydrophobic interactions: P:A.36, P:T.46, P:N.49, P:L.52, P:L.54, P:Y.75, P:Y.75, P:I.115, P:I.119, C:A.381 Hydrogen bonds: P:Y.82 pi-Stacking: P:H.41, P:H.41, P:H.92, P:H.92, P:H.92 Metal complexes: P:H.41, P:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.72: 2 residues within 4Å: Chain F: R.44 Chain P: E.23 No protein-ligand interaction detected (PLIP) CA.79: 2 residues within 4Å: Chain J: D.10, D.14 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:D.10, J:D.14, J:D.14 CA.82: 2 residues within 4Å: Chain M: E.114, H.231 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:E.114, M:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Broser, M. et al., Crystal Structure of Monomeric Photosystem II from Thermosynechococcus elongatus at 3.6-A Resolution. J.Biol.Chem. (2010)

Release Date

2010-06-16

Peptides

Photosystem Q(B) protein 1: A
Photosystem II core light harvesting protein: B
Photosystem II CP43 protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center protein ycf12: Q
Photosystem II reaction center X protein: R
Photosystem II reaction center protein Z: S

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

H
I

I
J

J
K

K
L

L
M

M
O

N
T

O
U

P
V

Q
y

R
X

S
Z

Membrane

We predict this structure to be a membrane protein.
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Photosystem Q(B) protein 1

Photosystem II core light harvesting protein

Photosystem II CP43 protein

Photosystem II D2 protein

Cytochrome b559 subunit alpha

Cytochrome b559 subunit beta

Photosystem II reaction center protein H

Photosystem II reaction center protein I

Photosystem II reaction center protein J

Photosystem II reaction center protein K

Photosystem II reaction center protein L

Photosystem II reaction center protein M

Photosystem II manganese-stabilizing polypeptide

Photosystem II reaction center protein T

Photosystem II 12 kDa extrinsic protein

Cytochrome c-550

Photosystem II reaction center protein ycf12

Photosystem II reaction center X protein

Photosystem II reaction center protein Z

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