SMTL ID : 5mx2.2 (1 other biounit)

Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.215, H.272 Chain D: H.214, H.268 Ligands: BCT.13 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Metal complexes: D:H.214, D:H.268, A:H.215, A:H.272

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: N.181, H.332, E.333 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: A.336, H.337, N.338, F.339 Chain C: E.342 Ligand excluded by PLIP

35 x CLA: CHLOROPHYLL A(Non-covalent)

CLA.4: 27 residues within 4Å: Chain A: F.119, Y.147, P.150, L.151, S.153, V.157, F.182, M.183, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, F.206, T.286, A.287, I.290 Chain D: L.182, L.205 Chain N: F.17 Ligands: CLA.5, PHO.6, CLA.69, CLA.70, LHG.74 17 PLIP interactions: 14 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N, Hydrophobic interactions: A:F.119, A:Y.147, A:F.182, A:F.186, A:Q.187, A:I.192, A:L.193, A:L.193, A:V.202, A:F.206, A:T.286, A:I.290, D:L.182, D:L.205, N:F.17 Hydrogen bonds: A:S.153 Metal complexes: A:H.198 CLA.5: 22 residues within 4Å: Chain A: F.48, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183 Chain D: M.198, V.201, A.202, L.205, G.206, L.209 Chain N: F.10 Ligands: CLA.4, PHO.6, CLA.70, PL9.73, LHG.74, LHG.89 9 PLIP interactions: 5 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.48, A:V.157, A:F.158, A:F.180, A:F.182, D:V.201, D:L.209, N:F.10 Metal complexes: H2O.2 CLA.7: 26 residues within 4Å: Chain A: I.36, P.39, T.40, F.93, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121 Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.16 Ligands: BCR.8, LMG.45, CLA.50, CLA.51, BCR.59, DGD.60, LFA.85 19 PLIP interactions: 12 interactions with chain A, 7 interactions with chain H, Hydrophobic interactions: A:I.36, A:P.39, A:T.40, A:F.93, A:P.95, A:W.97, A:W.97, A:F.117, A:L.121, H:V.8, H:V.8, H:Y.9, H:V.11, H:F.15, H:F.15, H:V.16 Hydrogen bonds: A:I.96 Salt bridges: A:H.118 Metal complexes: A:H.118 CLA.17: 10 residues within 4Å: Chain B: W.185, G.186, F.190 Chain G: F.41, I.44, I.48, L.55 Ligands: CLA.18, LMG.38, BCR.83 9 PLIP interactions: 5 interactions with chain G, 3 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: G:F.41, G:F.41, G:I.44, G:I.48, G:L.55, B:W.185, B:F.190, B:F.190 Metal complexes: H2O.5 CLA.18: 25 residues within 4Å: Chain B: G.189, F.190, P.192, G.197, A.200, H.201, A.204, A.205, V.208, F.247, F.250, V.251 Chain D: L.158, L.162 Chain G: F.38, F.41, I.45, L.46, Y.49 Ligands: CLA.17, CLA.19, CLA.24, CLA.25, BCR.83, DGD.84 17 PLIP interactions: 11 interactions with chain B, 4 interactions with chain G, 2 interactions with chain D, Hydrophobic interactions: B:F.190, B:F.190, B:A.200, B:A.204, B:A.205, B:V.208, B:F.247, B:F.247, B:F.250, B:F.250, G:F.38, G:F.41, G:I.45, G:Y.49, D:L.158, D:L.162 Metal complexes: B:H.201 CLA.19: 26 residues within 4Å: Chain B: R.68, L.69, A.146, C.150, F.153, L.158, M.166, V.198, H.201, H.202, A.244, F.247, A.248, V.251, V.252, T.262 Chain G: F.38, L.39 Ligands: CLA.18, CLA.20, CLA.21, CLA.22, CLA.24, CLA.25, CLA.26, BCR.83 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain G, Hydrophobic interactions: B:F.153, B:F.153, B:F.153, B:A.244, B:A.248, B:V.252, B:T.262, G:F.38, G:L.39 Hydrogen bonds: B:R.68 Salt bridges: B:R.68 pi-Cation interactions: B:H.201 Metal complexes: B:H.202 CLA.20: 22 residues within 4Å: Chain B: W.33, F.61, F.65, R.68, L.145, L.149, V.245, A.248, A.249, V.252, F.451, H.455, F.458, A.459, F.462 Ligands: CLA.19, CLA.21, CLA.23, CLA.27, CLA.28, CLA.29, CLA.31 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:W.33, B:F.61, B:F.65, B:L.145, B:V.245, B:A.248, B:A.249, B:V.252, B:F.458, B:F.458, B:F.462 Salt bridges: B:R.68 Metal complexes: B:H.455 CLA.21: 26 residues within 4Å: Chain B: T.27, V.30, A.31, W.33, A.34, A.38, V.62, F.65, M.66, R.68, L.69, V.96, H.100, L.103, L.143, A.205, G.209 Ligands: CLA.19, CLA.20, CLA.22, CLA.25, CLA.26, CLA.28, CLA.31, BCR.35, LFA.39 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:T.27, B:W.33, B:A.34, B:L.69, B:V.96, B:L.103, B:L.143 Hydrogen bonds: B:M.66 Salt bridges: B:R.68 Metal complexes: B:H.100 CLA.22: 23 residues within 4Å: Chain B: L.69, V.71, F.90, W.91, V.96, A.99, H.100, V.102, L.103, L.106, L.149, G.152, F.153, F.156, H.157, F.162, G.163, P.164 Ligands: CLA.19, CLA.21, BCR.35, LFA.39, LFA.41 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:L.69, B:V.71, B:F.90, B:F.90, B:W.91, B:W.91, B:W.91, B:W.91, B:A.99, B:V.102, B:L.103, B:L.103, B:L.106, B:L.149, B:F.153, B:F.156, B:F.162 Metal complexes: B:H.157 CLA.23: 26 residues within 4Å: Chain B: W.33, M.37, Y.40, Q.58, G.59, F.61, L.324, F.325, T.327, G.328, P.329, W.450, F.451, A.454 Chain D: F.196, M.199, T.277, M.281 Chain K: F.31 Chain L: F.14 Ligands: CLA.20, CLA.29, BCR.33, BCR.34, LHG.42, LMG.92 17 PLIP interactions: 1 interactions with chain L, 12 interactions with chain B, 2 interactions with chain D, 1 interactions with chain K, 1 Ligand-Water interactions, Hydrophobic interactions: L:F.14, B:Y.40, B:F.61, B:F.61, B:F.61, B:F.61, B:F.61, B:F.325, B:W.450, B:W.450, B:A.454, D:F.196, D:T.277, K:F.31 Hydrogen bonds: B:G.328 pi-Stacking: B:F.61 Metal complexes: H2O.6 CLA.24: 28 residues within 4Å: Chain B: T.236, S.239, S.240, A.243, F.247, F.463, H.466, I.467, G.470, T.473, L.474 Chain D: L.89, F.120, I.123, M.126, L.127, F.130, I.150 Chain G: L.39, L.43, L.46 Ligands: CLA.18, CLA.19, CLA.25, CLA.26, LFA.43, CLA.71, DGD.84 18 PLIP interactions: 8 interactions with chain B, 7 interactions with chain D, 3 interactions with chain G, Hydrophobic interactions: B:A.243, B:F.247, B:F.463, B:F.463, B:I.467, B:L.474, D:L.89, D:F.120, D:F.120, D:I.123, D:M.126, D:F.130, D:I.150, G:L.39, G:L.43, G:L.46 Hydrogen bonds: B:S.239 Metal complexes: B:H.466 CLA.25: 26 residues within 4Å: Chain B: F.139, V.208, A.212, F.215, H.216, V.219, R.220, P.221, P.222, L.225, L.229, M.231 Chain G: T.27, T.28, M.31, F.34, M.35, L.39, L.43 Ligands: CLA.18, CLA.19, CLA.21, CLA.24, CLA.26, LFA.43, BCR.83 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain G, Hydrophobic interactions: B:F.139, B:F.139, B:F.139, B:V.208, B:A.212, B:F.215, B:F.215, B:L.225, B:L.229, G:M.31, G:F.34, G:F.34, G:L.39 Salt bridges: B:H.216 Metal complexes: B:H.216 CLA.26: 18 residues within 4Å: Chain B: L.135, M.138, F.139, H.142, L.143, M.231, T.236, V.237, S.240, S.241, A.244 Ligands: CLA.19, CLA.21, CLA.24, CLA.25, CLA.28, CLA.31, BCR.83 9 PLIP interactions: 8 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:M.138, B:F.139, B:F.139, B:M.231, B:T.236, B:V.237, B:A.244 Hydrogen bonds: B:H.142 Metal complexes: H2O.4 CLA.27: 21 residues within 4Å: Chain B: W.5, Y.6, R.7, V.8, H.9, T.10, L.238, I.242, L.461, F.462, F.464, G.465, W.468, H.469, R.472 Ligands: CLA.20, CLA.28, CLA.29, CLA.30, LHG.42, LHG.89 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:W.5, B:W.5, B:L.238, B:I.242, B:F.462, B:F.462, B:F.464 Hydrogen bonds: B:V.8, B:H.9 Salt bridges: B:H.9, B:R.472 pi-Stacking: B:W.468 Metal complexes: B:H.469 CLA.28: 20 residues within 4Å: Chain B: H.9, L.12, L.19, A.22, H.23, H.26, T.27, I.234, V.237, L.238, S.241, I.242, V.245 Ligands: CLA.20, CLA.21, CLA.26, CLA.27, CLA.29, CLA.30, CLA.31 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:H.9, B:L.12, B:L.12, B:L.19, B:A.22, B:H.23, B:H.26, B:T.27, B:I.234, B:V.237, B:L.238, B:L.238, B:V.245 Hydrogen bonds: B:S.241 Salt bridges: B:H.23 Metal complexes: B:H.23 CLA.29: 14 residues within 4Å: Chain B: H.9, H.26, V.30, F.462 Chain L: F.14 Ligands: CLA.20, CLA.23, CLA.27, CLA.28, CLA.30, BCR.33, BCR.34, LHG.42, LMG.92 6 PLIP interactions: 1 interactions with chain L, 5 interactions with chain B, Hydrophobic interactions: L:F.14, B:V.30, B:V.30, B:F.462 Salt bridges: B:H.9 Metal complexes: B:H.26 CLA.30: 19 residues within 4Å: Chain B: V.8, H.9, V.11, L.12, A.22, L.29, W.115 Chain K: Q.8, V.10 Chain L: F.21, L.25 Ligands: SQD.15, CLA.27, CLA.28, CLA.29, BCR.33, LHG.89, LFA.91, LMG.92 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain L, Hydrophobic interactions: B:V.8, B:V.8, B:L.12, B:L.29, B:W.115, L:F.21, L:L.25 Metal complexes: B:H.9 CLA.31: 17 residues within 4Å: Chain B: I.20, H.23, L.24, T.27, M.138, I.141, H.142, L.145 Chain G: L.7, L.14, N.15 Ligands: CLA.20, CLA.21, CLA.26, CLA.28, CLA.32, BCR.35 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain G, Hydrophobic interactions: B:I.20, B:I.141, B:L.145, G:L.7, G:L.14, G:N.15 Hydrogen bonds: B:H.23 Metal complexes: B:H.142 CLA.32: 13 residues within 4Å: Chain B: I.20, L.24, A.110, W.113, H.114, L.120, L.122, F.123 Chain G: T.5, L.7, G.8 Ligands: CLA.31, BCR.35 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain G, Hydrophobic interactions: B:I.20, B:L.24, B:W.113, B:W.113, B:L.120, B:L.122, B:F.123 pi-Stacking: B:W.113 Metal complexes: B:H.114 Hydrogen bonds: G:T.5 CLA.46: 21 residues within 4Å: Chain C: T.82, L.83, L.156, G.159, A.160, L.163, W.211, V.221, H.225, I.228, A.266, M.270, I.273, F.277, V.284, Y.285 Ligands: CLA.47, CLA.48, CLA.51, CLA.52, BCR.59 13 PLIP interactions: 13 interactions with chain C, Hydrophobic interactions: C:A.160, C:L.163, C:W.211, C:I.228, C:I.228, C:I.228, C:A.266, C:M.270, C:I.273, C:F.277, C:V.284 Hydrogen bonds: C:Y.285 Metal complexes: C:H.225 CLA.47: 21 residues within 4Å: Chain C: W.51, L.76, H.79, L.83, L.162, K.166, F.170, L.267, M.270, A.274, V.278, Y.285, L.414, H.418, L.421, F.425 Ligands: CLA.46, CLA.48, CLA.49, CLA.55, CLA.57 15 PLIP interactions: 15 interactions with chain C, Hydrophobic interactions: C:L.76, C:L.83, C:L.162, C:K.166, C:F.170, C:L.267, C:A.274, C:L.414, C:L.421, C:L.421, C:F.425 Hydrogen bonds: C:Y.285 Salt bridges: C:H.79, C:H.418 Metal complexes: C:H.418 CLA.48: 19 residues within 4Å: Chain C: I.48, V.49, A.52, T.56, L.76, H.79, L.83, W.85, V.102, H.106, L.267 Ligands: CLA.46, CLA.47, CLA.52, CLA.54, CLA.55, CLA.57, CLA.58, LFA.65 8 PLIP interactions: 8 interactions with chain C, Hydrophobic interactions: C:V.49, C:A.52, C:L.83, C:W.85, C:V.102, C:L.267 Salt bridges: C:H.79 Metal complexes: C:H.106 CLA.49: 21 residues within 4Å: Chain A: F.285 Chain C: W.51, M.55, F.58, Q.72, G.73, I.75, L.392, W.413, S.417, F.424 Chain J: P.26, V.27, V.30 Ligands: CLA.47, CLA.53, CLA.55, DGD.61, DGD.62, LMG.63, LHG.75 11 PLIP interactions: 8 interactions with chain C, 1 interactions with chain A, 1 interactions with chain J, 1 Ligand-Water interactions, Hydrophobic interactions: C:W.51, C:I.75, C:L.392, C:W.413, C:W.413, C:W.413, C:W.413, C:F.424, A:F.285, J:V.30 Metal complexes: H2O.8 CLA.50: 20 residues within 4Å: Chain A: F.33, L.121, W.131 Chain C: F.252, S.261, Y.262, G.265, M.269, H.429, L.430, A.433, R.437 Chain H: V.12, V.16, F.23 Ligands: CLA.7, LMG.45, CLA.52, BCR.59, DGD.60 14 PLIP interactions: 3 interactions with chain H, 5 interactions with chain C, 6 interactions with chain A, Hydrophobic interactions: H:V.12, H:V.16, H:F.23, C:Y.262, C:L.430, A:F.33, A:F.33, A:L.121, A:W.131, A:W.131, A:W.131 Hydrogen bonds: C:Y.262 Salt bridges: C:R.437 Metal complexes: C:H.429 CLA.51: 20 residues within 4Å: Chain C: L.149, L.153, I.231, C.232, G.235, W.238, H.239, T.242, T.243, P.244, F.245, W.247, A.248, F.252 Ligands: CLA.7, LMG.45, CLA.46, CLA.52, BCR.59, LMG.66 7 PLIP interactions: 7 interactions with chain C, Hydrophobic interactions: C:L.149, C:L.153, C:L.153, C:F.252 Hydrogen bonds: C:F.245 Salt bridges: C:H.239 Metal complexes: C:H.239 CLA.52: 20 residues within 4Å: Chain C: M.145, L.149, H.152, L.153, L.156, I.228, C.232, F.252, W.254, Y.259, Y.262, S.263, A.266, M.270 Ligands: CLA.46, CLA.48, CLA.50, CLA.51, CLA.54, BCR.59 10 PLIP interactions: 9 interactions with chain C, 1 Ligand-Water interactions, Hydrophobic interactions: C:M.145, C:L.156, C:I.228, C:F.252, C:W.254, C:Y.259, C:Y.259, C:Y.262, C:A.266 Metal complexes: H2O.8 CLA.53: 22 residues within 4Å: Chain C: F.21, W.24, A.25, G.26, N.27, A.28, L.260, L.264, F.424, F.425, G.428, W.431, H.432, R.435 Chain J: V.30 Ligands: SQD.10, CLA.49, CLA.54, CLA.55, CLA.56, LMG.63, LHG.75 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain J, Hydrophobic interactions: C:L.260, C:L.260, C:L.264, C:F.424, C:F.425, C:W.431, J:V.30 Hydrogen bonds: C:N.27 Salt bridges: C:H.432, C:R.435 pi-Stacking: C:W.431 Metal complexes: C:H.432 CLA.54: 22 residues within 4Å: Chain C: N.27, I.31, L.37, A.40, H.41, H.44, Y.137, W.139, I.148, G.256, E.257, Y.259, L.260, S.263, L.264, L.267 Ligands: CLA.48, CLA.52, CLA.53, CLA.55, CLA.56, CLA.57 11 PLIP interactions: 11 interactions with chain C, Hydrophobic interactions: C:N.27, C:I.31, C:L.37, C:A.40, C:H.44, C:W.139, C:I.148, C:Y.259, C:L.260 Hydrogen bonds: C:S.263 Metal complexes: C:H.41 CLA.55: 20 residues within 4Å: Chain C: N.27, H.44, L.47, I.48, W.51, L.267, L.421, F.424, F.425 Chain J: P.29, V.30, L.33 Ligands: CLA.47, CLA.48, CLA.49, CLA.53, CLA.54, CLA.56, LMG.63, LHG.75 11 PLIP interactions: 9 interactions with chain C, 2 interactions with chain J, Hydrophobic interactions: C:L.47, C:W.51, C:W.51, C:L.267, C:L.421, C:F.424, C:F.425, J:V.30, J:L.33 Hydrogen bonds: C:N.27 Metal complexes: C:H.44 CLA.56: 30 residues within 4Å: Chain C: R.14, W.23, G.26, N.27, R.29, L.30, L.33, K.36, A.40, F.115, A.121, I.122 Chain J: F.32, L.33, A.36, F.37, W.39, Q.40 Chain S: I.36, L.39, N.45, L.46 Chain T: V.20, V.23, P.24, A.28 Ligands: CLA.53, CLA.54, CLA.55, BCR.88 22 PLIP interactions: 7 interactions with chain C, 3 interactions with chain S, 4 interactions with chain T, 8 interactions with chain J, Hydrophobic interactions: C:L.30, C:F.115, C:A.121, C:I.122, C:I.122, S:I.36, S:L.39, S:L.46, T:V.20, T:V.23, T:P.24, T:A.28, J:F.32, J:F.32, J:L.33, J:A.36, J:F.37, J:W.39 Hydrogen bonds: C:R.29 Salt bridges: C:R.14 pi-Stacking: J:W.39, J:W.39 CLA.57: 20 residues within 4Å: Chain C: L.38, H.41, A.45, L.113, F.134, F.135, Y.137, I.148, F.151, H.152, I.154, V.155, I.158, G.159, L.162 Ligands: CLA.47, CLA.48, CLA.54, CLA.58, BCR.68 10 PLIP interactions: 10 interactions with chain C, Hydrophobic interactions: C:L.38, C:H.41, C:Y.137, C:I.148, C:F.151, C:I.154, C:I.158, C:L.162 Water bridges: C:A.45 Metal complexes: C:H.152 CLA.58: 13 residues within 4Å: Chain C: L.38, V.42, V.112, G.116, Y.119, H.120, P.125, L.128, Y.131, F.135 Ligands: CLA.48, CLA.57, BCR.68 13 PLIP interactions: 13 interactions with chain C, Hydrophobic interactions: C:L.38, C:L.38, C:V.42, C:V.42, C:V.112, C:L.128, C:Y.131, C:F.135, C:F.135, C:F.135 Hydrogen bonds: C:Y.119 pi-Stacking: C:Y.119 Metal complexes: C:H.120 CLA.69: 19 residues within 4Å: Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, W.278 Chain D: F.157, V.175, I.178, F.179, F.181, L.182 Ligands: CLA.4, PL9.9, PHO.14, DGD.62, CLA.70, LMG.81 12 PLIP interactions: 6 interactions with chain A, 5 interactions with chain D, 1 Ligand-Water interactions, Hydrophobic interactions: A:V.202, A:F.206, A:L.210, A:W.278, D:F.157, D:I.178, D:F.181, D:L.182, D:L.182 Water bridges: A:H.198 pi-Stacking: A:F.206 Metal complexes: H2O.10 CLA.70: 27 residues within 4Å: Chain A: M.183, F.206 Chain D: P.149, V.152, F.153, S.155, V.156, F.181, L.182, F.185, Q.186, W.191, T.192, H.197, G.200, V.201, V.204, L.205, S.282, A.283, V.286 Ligands: CLA.4, CLA.5, PL9.9, PHO.14, CLA.69, LMG.81 14 PLIP interactions: 12 interactions with chain D, 2 interactions with chain A, Hydrophobic interactions: D:V.152, D:F.153, D:F.181, D:L.182, D:F.185, D:Q.186, D:T.192, D:V.201, D:V.204, D:L.205, A:F.206, A:F.206 pi-Stacking: D:W.191 Metal complexes: D:H.197 CLA.71: 26 residues within 4Å: Chain D: I.35, L.36, C.40, L.43, L.89, L.90, L.91, L.92, W.93, W.104, T.112, F.113, L.116, H.117 Chain G: G.36, L.37, V.40, L.43 Chain Q: G.13, L.14, G.17, V.20, L.21 Ligands: CLA.24, LFA.78, BCR.83 16 PLIP interactions: 3 interactions with chain Q, 11 interactions with chain D, 2 interactions with chain G, Hydrophobic interactions: Q:L.14, Q:V.20, Q:L.21, D:L.36, D:L.43, D:W.93, D:W.93, D:W.93, D:L.116, G:V.40, G:V.40 Hydrogen bonds: D:L.92 Salt bridges: D:H.117 pi-Stacking: D:F.113, D:F.113 Metal complexes: D:H.117

2 x PHO: PHEOPHYTIN A(Non-covalent)

PHO.6: 29 residues within 4Å: Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, L.174, G.175, I.176, V.205, P.279, V.283 Chain D: L.205, A.208, L.209, A.212, I.213, W.253, F.257 Ligands: CLA.4, CLA.5, SQD.12, LHG.74 19 PLIP interactions: 15 interactions with chain A, 4 interactions with chain D Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:I.115, A:F.119, A:Y.126, A:A.146, A:Y.147, A:Y.147, A:P.150, A:F.158, A:V.205, A:V.283, D:L.205, D:A.208, D:L.209, D:A.212 Hydrogen bonds: A:Q.130, A:Y.147 PHO.14: 29 residues within 4Å: Chain A: F.206, A.209, L.210, M.214, F.255, L.258 Chain D: A.41, A.44, L.45, W.48, I.114, G.121, L.122, F.125, Q.129, N.142, A.145, F.146, P.149, F.153, F.173, G.174, V.175, P.275, V.276, L.279 Ligands: PL9.9, CLA.69, CLA.70 22 PLIP interactions: 19 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:A.41, D:W.48, D:W.48, D:W.48, D:W.48, D:I.114, D:L.122, D:F.125, D:F.125, D:A.145, D:F.146, D:P.149, D:F.173, D:P.275, D:L.279, D:L.279, A:F.206, A:L.210, A:L.210 Hydrogen bonds: D:Q.129, D:N.142 pi-Stacking: D:F.146

11 x BCR: BETA-CAROTENE(Non-covalent)

BCR.8: 15 residues within 4Å: Chain A: I.38, L.42, A.43, I.46, C.47, I.50, A.51, A.54, A.55, I.96, L.106 Chain H: F.15 Ligands: CLA.7, LFA.11, LFA.85 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.38, A:L.42, A:I.46, A:I.50, A:A.51, A:A.54, A:I.96, A:L.106 BCR.33: 12 residues within 4Å: Chain B: M.25, L.29, C.112, W.115 Chain L: A.10, L.13 Ligands: SQD.15, CLA.23, CLA.29, CLA.30, BCR.34, LMG.92 6 PLIP interactions: 2 interactions with chain L, 4 interactions with chain B Hydrophobic interactions: L:A.10, L:L.13, B:L.29, B:L.29, B:W.115, B:W.115 BCR.34: 13 residues within 4Å: Chain B: L.29, G.32, W.33, S.36, I.101, V.102, S.104, G.105, L.109 Ligands: CLA.23, CLA.29, BCR.33, LMG.92 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.29, B:W.33, B:L.109 BCR.35: 11 residues within 4Å: Chain B: L.106, L.107, L.109, A.110, W.113, Y.117 Ligands: CLA.21, CLA.22, CLA.31, CLA.32, LFA.39 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.106, B:L.107, B:L.109, B:A.110, B:W.113, B:Y.117 BCR.59: 19 residues within 4Å: Chain C: I.197, Y.200, L.201, I.212, V.215, D.220, V.221, G.224, H.225, I.228, F.252 Chain H: V.20, F.23, L.24 Ligands: CLA.7, CLA.46, CLA.50, CLA.51, CLA.52 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain H Hydrophobic interactions: C:I.197, C:Y.200, C:Y.200, C:L.201, C:I.212, C:V.215, C:I.228, C:I.228, C:F.252, H:V.20, H:F.23, H:L.24 BCR.67: 21 residues within 4Å: Chain C: F.50 Chain I: A.14, T.15, G.18, M.19 Chain J: L.21, L.25, I.28, L.31, F.32, A.34, V.38 Chain S: I.28, G.29, G.32, P.33 Chain T: S.16, F.17, V.20 Ligands: SQD.10, BCR.88 11 PLIP interactions: 9 interactions with chain J, 1 interactions with chain T, 1 interactions with chain C Hydrophobic interactions: J:L.21, J:L.25, J:I.28, J:I.28, J:L.31, J:L.31, J:F.32, J:A.34, J:V.38, T:F.17, C:F.50 BCR.68: 13 residues within 4Å: Chain C: F.100, V.104, I.108, S.109, L.113, F.135 Chain J: Y.15 Chain T: V.51, G.55, N.58, F.59 Ligands: CLA.57, CLA.58 6 PLIP interactions: 1 interactions with chain T, 5 interactions with chain C Hydrophobic interactions: T:F.59, C:F.100, C:V.104, C:I.108, C:L.113, C:F.135 BCR.72: 15 residues within 4Å: Chain D: Y.42, L.43, G.46, G.47, L.49, T.50, F.101, F.113 Chain F: P.29, T.30, F.33, L.34 Chain I: V.21, V.25 Ligands: LMG.81 12 PLIP interactions: 5 interactions with chain D, 6 interactions with chain F, 1 interactions with chain I Hydrophobic interactions: D:Y.42, D:L.43, D:L.49, D:F.101, D:F.113, F:P.29, F:T.30, F:F.33, F:F.33, F:F.33, F:L.34, I:V.21 BCR.83: 16 residues within 4Å: Chain G: M.35, L.37, F.38, F.41, I.44, L.55 Chain Q: T.2, I.3, L.7, F.11 Ligands: CLA.17, CLA.18, CLA.19, CLA.25, CLA.26, CLA.71 9 PLIP interactions: 2 interactions with chain Q, 7 interactions with chain G Hydrophobic interactions: Q:L.7, Q:F.11, G:L.37, G:F.38, G:F.38, G:F.41, G:F.41, G:I.44, G:L.55 BCR.88: 19 residues within 4Å: Chain C: A.43, G.46, L.47, F.50, V.104, L.107, S.110, A.111, G.114, V.118 Chain J: F.18, F.32, L.35 Chain T: L.12, V.13, S.16, V.20 Ligands: CLA.56, BCR.67 16 PLIP interactions: 8 interactions with chain C, 4 interactions with chain T, 4 interactions with chain J Hydrophobic interactions: C:A.43, C:L.47, C:F.50, C:F.50, C:V.104, C:L.107, C:A.111, C:V.118, T:L.12, T:L.12, T:V.13, T:V.20, J:F.18, J:F.32, J:F.32, J:L.35 BCR.94: 12 residues within 4Å: Chain A: L.28 Chain N: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22 Ligands: SQD.12, LHG.74 7 PLIP interactions: 6 interactions with chain N, 1 interactions with chain A Hydrophobic interactions: N:I.4, N:I.14, N:F.17, N:F.18, N:I.21, N:F.22, A:L.28

2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)

PL9.9: 27 residues within 4Å: Chain A: F.211, M.214, H.215, L.218, I.248, A.251, H.252, F.255, I.259, S.264, F.265, L.271, L.275 Chain D: F.38, P.39, Y.42, L.45 Chain F: V.18, A.22, T.25, L.26 Chain Q: T.24 Ligands: PHO.14, CLA.69, CLA.70, LHG.79, SQD.82 18 PLIP interactions: 2 interactions with chain F, 10 interactions with chain A, 1 interactions with chain Q, 5 interactions with chain D Hydrophobic interactions: F:V.18, F:L.26, A:F.211, A:L.218, A:H.252, A:F.255, A:F.255, A:I.259, A:L.271, A:L.271, A:L.275, Q:T.24, D:F.38, D:F.38, D:F.38, D:P.39, D:L.45 Hydrogen bonds: A:F.265 PL9.73: 29 residues within 4Å: Chain A: F.52, I.53, I.77, I.176 Chain D: M.198, M.199, A.202, L.210, I.213, H.214, T.217, Y.244, M.246, A.249, W.253, A.260, F.261, L.267, F.270, F.273, V.274 Chain K: L.23, V.26, L.29, L.30 Chain N: F.10 Ligands: CLA.5, LHG.74, LHG.89 27 PLIP interactions: 5 interactions with chain K, 14 interactions with chain D, 4 interactions with chain A, 4 interactions with chain N Hydrophobic interactions: K:L.23, K:V.26, K:L.29, K:L.30, K:L.30, D:M.199, D:T.217, D:Y.244, D:W.253, D:F.261, D:F.261, D:F.261, D:L.267, D:F.270, D:F.273, D:V.274, D:V.274, A:F.52, A:I.53, A:I.77, A:I.176, N:F.10, N:F.10, N:F.10, N:F.10 Hydrogen bonds: D:T.217, D:F.261

4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)

SQD.10: 22 residues within 4Å: Chain A: L.200, A.203, G.204, N.267, S.270, F.274, A.277, W.278, V.281, G.282 Chain C: Q.16, W.23, W.24 Chain D: F.232, R.233 Chain J: A.34, F.37 Ligands: CLA.53, LMG.63, LFA.64, BCR.67, LHG.75 17 PLIP interactions: 12 interactions with chain A, 1 interactions with chain D, 2 interactions with chain C, 2 interactions with chain J Hydrophobic interactions: A:A.203, A:F.274, A:F.274, A:A.277, A:W.278, A:V.281, A:V.281, A:V.281, C:W.23, J:A.34, J:F.37 Hydrogen bonds: A:N.267, A:S.270, A:S.270, C:Q.16 Water bridges: A:N.267 Salt bridges: D:R.233 SQD.12: 9 residues within 4Å: Chain A: N.26, R.27, L.28, L.42, T.45 Chain N: F.22 Ligands: PHO.6, LHG.74, BCR.94 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.28, A:T.45 Hydrogen bonds: A:R.27, A:L.28 SQD.15: 10 residues within 4Å: Chain B: R.18, A.28, L.29, S.104, F.108, W.115 Chain K: N.4, R.7 Ligands: CLA.30, BCR.33 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain K Hydrophobic interactions: B:A.28, B:L.29, B:F.108, B:F.108 Salt bridges: B:R.18, K:R.7 SQD.82: 13 residues within 4Å: Chain D: W.21, R.26 Chain F: F.16, T.17, V.18, V.21 Chain Q: T.24, V.27, I.31, D.35 Chain R: Q.30, L.34 Ligands: PL9.9 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain R, 1 interactions with chain Q, 3 interactions with chain F Salt bridges: D:R.26 Hydrogen bonds: R:Q.30, F:V.18 Hydrophobic interactions: Q:I.31, F:F.16, F:F.16

20 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)

LFA.11: 2 residues within 4Å: Chain A: W.20 Ligands: BCR.8 Ligand excluded by PLIP LFA.16: 2 residues within 4Å: Chain B: T.44 Ligands: LFA.37 Ligand excluded by PLIP LFA.36: 3 residues within 4Å: Chain B: W.75, L.98 Ligands: LFA.41 Ligand excluded by PLIP LFA.37: 5 residues within 4Å: Chain B: L.39, L.42, A.43 Ligands: LFA.16, LFA.40 Ligand excluded by PLIP LFA.39: 6 residues within 4Å: Chain B: G.89, F.90, W.91 Ligands: CLA.21, CLA.22, BCR.35 Ligand excluded by PLIP LFA.40: 2 residues within 4Å: Chain B: L.98 Ligands: LFA.37 Ligand excluded by PLIP LFA.41: 5 residues within 4Å: Chain B: G.89, F.90, L.98 Ligands: CLA.22, LFA.36 Ligand excluded by PLIP LFA.43: 5 residues within 4Å: Ligands: CLA.24, CLA.25, LFA.44, LFA.76, LFA.77 Ligand excluded by PLIP LFA.44: 6 residues within 4Å: Chain B: R.224, L.225 Chain D: F.15, D.16 Ligands: LFA.43, LFA.77 Ligand excluded by PLIP LFA.64: 3 residues within 4Å: Chain C: W.23 Chain J: F.45 Ligands: SQD.10 Ligand excluded by PLIP LFA.65: 7 residues within 4Å: Chain C: W.85, P.98, V.101, V.105, H.106, S.109 Ligands: CLA.48 Ligand excluded by PLIP LFA.76: 7 residues within 4Å: Chain D: W.32, I.35, L.36, L.127, R.134 Ligands: LFA.43, LFA.77 Ligand excluded by PLIP LFA.77: 5 residues within 4Å: Chain D: W.32 Chain Q: F.25 Ligands: LFA.43, LFA.44, LFA.76 Ligand excluded by PLIP LFA.78: 10 residues within 4Å: Chain D: L.92, W.93, Q.98, G.99 Chain Q: I.12, S.16, G.17, V.20, L.21 Ligands: CLA.71 Ligand excluded by PLIP LFA.85: 3 residues within 4Å: Ligands: CLA.7, BCR.8, LFA.86 Ligand excluded by PLIP LFA.86: 2 residues within 4Å: Chain H: L.4 Ligands: LFA.85 Ligand excluded by PLIP LFA.87: 5 residues within 4Å: Chain I: G.26, Y.30, Y.33 Ligands: DGD.61, LMG.63 Ligand excluded by PLIP LFA.90: 2 residues within 4Å: Chain L: I.23, Y.26 Ligand excluded by PLIP LFA.91: 3 residues within 4Å: Chain L: V.20, Q.28 Ligands: CLA.30 Ligand excluded by PLIP LFA.93: 5 residues within 4Å: Chain L: L.8, T.11, A.12 Chain N: M.1, F.8 Ligand excluded by PLIP

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.13: 9 residues within 4Å: Chain A: H.215, E.244, Y.246, H.272 Chain D: H.214, Y.244, K.264, H.268 Ligands: FE.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.246

6 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)

LMG.38: 5 residues within 4Å: Chain B: E.184, W.185, A.204, I.207 Ligands: CLA.17 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.185, B:W.185, B:A.204, B:I.207 Hydrogen bonds: B:W.185 LMG.45: 21 residues within 4Å: Chain A: F.93, W.97, F.117, S.124, F.155 Chain C: L.201, L.202, K.203, S.204, P.205, F.206, E.209, W.211, M.269, F.272 Chain H: K.5, Y.9 Ligands: CLA.7, CLA.50, CLA.51, DGD.60 14 PLIP interactions: 3 interactions with chain A, 7 interactions with chain C, 4 interactions with chain H Hydrophobic interactions: A:F.117, A:F.155, C:P.205, C:W.211, C:W.211, C:F.272 Hydrogen bonds: A:W.97, C:E.209, H:K.5, H:K.5, H:Y.9, H:Y.9 Water bridges: C:S.204, C:S.204 LMG.63: 12 residues within 4Å: Chain C: F.58, H.62 Chain I: I.22 Chain J: D.23, V.27 Chain S: I.25 Ligands: SQD.10, CLA.49, CLA.53, CLA.55, DGD.61, LFA.87 5 PLIP interactions: 1 interactions with chain S, 1 interactions with chain I, 1 interactions with chain C, 2 interactions with chain J Hydrophobic interactions: S:I.25, I:I.22, J:V.27, J:V.27 Salt bridges: C:H.62 LMG.66: 7 residues within 4Å: Chain C: L.192, D.193, P.194, W.227, I.231, A.234 Ligands: CLA.51 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.192, C:P.194, C:W.227, C:I.231, C:A.234 Salt bridges: C:R.195 LMG.81: 18 residues within 4Å: Chain D: Y.67, G.70, C.71, N.72, F.73 Chain F: T.30, I.37, M.40, Q.41 Chain I: F.28, G.31, A.32, L.36 Ligands: DGD.62, CLA.69, CLA.70, BCR.72, HEM.80 9 PLIP interactions: 2 interactions with chain I, 5 interactions with chain D, 2 interactions with chain F Hydrogen bonds: I:G.31, D:F.73, F:M.40, F:Q.41 Water bridges: I:F.28 Hydrophobic interactions: D:F.73, D:F.73, D:F.73, D:F.73 LMG.92: 19 residues within 4Å: Chain B: T.327, G.328, P.329, K.332, F.453, V.457 Chain D: I.284 Chain K: F.35 Chain L: N.4, L.6, A.10, L.13, F.14 Ligands: CLA.23, CLA.29, CLA.30, BCR.33, BCR.34, LHG.89 13 PLIP interactions: 1 interactions with chain D, 6 interactions with chain B, 4 interactions with chain L, 2 interactions with chain K Hydrophobic interactions: D:I.284, B:F.453, B:V.457, L:A.10, L:L.13, L:F.14, K:F.35, K:F.35 Hydrogen bonds: B:T.327, B:T.327, L:N.4 Water bridges: B:T.327, B:T.327

5 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.42: 24 residues within 4Å: Chain A: S.232, N.234 Chain B: W.5, Y.6, R.7, L.461, F.464, W.468 Chain D: R.139, Y.141, I.144, W.266, F.269, L.272, F.273, V.276, T.277, M.281 Chain K: L.23 Chain L: P.18 Ligands: CLA.23, CLA.27, CLA.29, LHG.89 15 PLIP interactions: 1 interactions with chain K, 6 interactions with chain B, 6 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: K:L.23, B:W.5, B:Y.6, B:L.461, B:F.464, D:L.272, D:F.273, D:V.276 Water bridges: B:R.7, D:F.269 Salt bridges: B:R.7 Hydrogen bonds: D:R.139, D:Y.141, A:N.234, A:N.234 LHG.74: 28 residues within 4Å: Chain A: M.37 Chain D: F.257, I.259, A.260, F.261, S.262, N.263, W.266, F.270 Chain K: N.13, T.15, S.16, Y.18, L.19, L.22, V.26 Chain N: F.10, I.13, F.17, A.20, I.21 Ligands: CLA.4, CLA.5, PHO.6, SQD.12, PL9.73, LHG.89, BCR.94 17 PLIP interactions: 8 interactions with chain D, 5 interactions with chain N, 4 interactions with chain K Hydrophobic interactions: D:I.259, D:F.261, D:F.270, N:F.10, N:I.13, N:F.17, N:F.17, N:I.21, K:Y.18, K:V.26 Hydrogen bonds: D:S.262, D:S.262, D:N.263, K:N.13, K:S.16 Water bridges: D:S.262, D:S.262 LHG.75: 21 residues within 4Å: Chain A: R.140, W.142, V.145, A.146, F.273, V.280, W.284 Chain C: W.24, W.431, R.435 Chain D: E.219, N.220, A.229, S.230, T.231, F.232 Ligands: SQD.10, CLA.49, CLA.53, CLA.55, DGD.62 18 PLIP interactions: 9 interactions with chain A, 5 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: A:W.142, A:V.145, A:A.146, A:F.273, A:F.273, A:V.280, A:W.284, A:W.284, C:W.24, C:W.24, C:W.431 Salt bridges: A:R.140 Hydrogen bonds: C:R.435, C:R.435, D:N.220, D:A.229, D:S.230, D:T.231 LHG.79: 13 residues within 4Å: Chain A: L.258, I.259, F.260, Y.262, A.263 Chain D: F.27, L.37, F.38 Chain E: P.9, F.10, S.11 Chain F: V.23 Ligands: PL9.9 9 PLIP interactions: 4 interactions with chain E, 3 interactions with chain A, 1 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: E:F.10, A:I.259, A:F.260, A:A.263, F:V.23, D:L.37 Hydrogen bonds: E:F.10, E:S.11, E:S.11 LHG.89: 24 residues within 4Å: Chain A: S.232, N.234 Chain B: P.4, W.5, Y.6 Chain D: W.266, F.270, F.273 Chain K: E.11, L.12, N.13, S.16, G.20, L.22, L.23, V.26 Chain L: F.21 Ligands: CLA.5, CLA.27, CLA.30, LHG.42, PL9.73, LHG.74, LMG.92 19 PLIP interactions: 4 interactions with chain D, 7 interactions with chain K, 2 interactions with chain L, 3 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: D:W.266, D:F.270, D:F.273, D:F.273, K:L.22, K:L.22, K:V.26, K:V.26, L:F.21, L:F.21, B:W.5 Hydrogen bonds: K:E.11, K:N.13, K:S.16, A:S.232, A:S.232, A:N.234, B:W.5, B:Y.6

4 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)

DGD.60: 30 residues within 4Å: Chain A: L.91, M.127, F.155, I.160, I.163 Chain C: P.205, F.206, G.207, G.208, E.209, G.210, W.211, V.213, S.214, V.215, N.216, M.269, F.272, C.276, F.280, N.281, N.282, T.283, D.348, F.349, R.350, L.426 Ligands: CLA.7, LMG.45, CLA.50 22 PLIP interactions: 18 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:P.205, C:F.206, C:F.206, C:V.213, C:F.272, C:F.272, C:F.272, C:L.426, A:F.155, A:F.155, A:F.155, A:I.163 Hydrogen bonds: C:G.208, C:E.209, C:V.215, C:N.282, C:T.283, C:D.348, C:D.348, C:R.350, C:R.350 Water bridges: C:N.216 DGD.61: 18 residues within 4Å: Chain A: H.195, F.197, L.297 Chain C: E.71, Q.72, G.73, S.394, N.406, F.407, V.408, W.413, T.416, S.417 Chain I: Y.33 Ligands: CLA.49, DGD.62, LMG.63, LFA.87 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:W.413, A:F.197, A:L.297 Hydrogen bonds: C:S.394, C:N.406, C:N.406, C:V.408, C:V.408, C:W.413 Water bridges: C:G.73 DGD.62: 30 residues within 4Å: Chain A: P.196, Q.199, L.200, A.203, F.285, F.300, N.301, F.302, S.305 Chain C: L.392, N.393, S.394, V.395, N.403, S.404, V.405, N.406 Chain D: L.74 Chain I: F.29, A.32, Y.33, G.37, S.38, S.39 Chain P: Q.60 Ligands: CLA.49, DGD.61, CLA.69, LHG.75, LMG.81 17 PLIP interactions: 8 interactions with chain A, 4 interactions with chain C, 2 interactions with chain P, 2 interactions with chain I, 1 interactions with chain D Hydrophobic interactions: A:P.196, A:P.196, A:L.200, A:A.203, A:F.285, A:F.300, A:F.300, D:L.74 Hydrogen bonds: A:S.305, C:N.393, C:N.403, C:S.404, C:V.405, P:Q.60, P:Q.60, I:G.37, I:S.39 DGD.84: 27 residues within 4Å: Chain B: Y.193, F.250, G.254, Y.258, Y.273, Q.274, S.277, Y.279, A.456, L.460, F.463 Chain D: G.86, H.87, I.123, V.154, I.159, L.162, G.163, L.291 Chain G: L.46, Y.49, N.50, V.60, S.61, W.62 Ligands: CLA.18, CLA.24 21 PLIP interactions: 7 interactions with chain D, 6 interactions with chain G, 8 interactions with chain B Hydrophobic interactions: D:V.154, D:I.159, D:L.162, D:L.162, D:L.291, G:L.46, G:Y.49, B:F.250, B:Y.258, B:A.456, B:L.460, B:F.463 Hydrogen bonds: D:H.87, G:N.50, G:V.60, G:S.61, G:W.62, B:Y.193, B:S.277, B:S.277 Salt bridges: D:H.87

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.80: 18 residues within 4Å: Chain E: F.10, I.13, R.18, Y.19, I.22, H.23, T.26, L.30 Chain F: I.15, R.19, W.20, H.24, A.27, V.28, I.31 Chain R: A.19, I.23 Ligands: LMG.81 19 PLIP interactions: 3 interactions with chain R, 8 interactions with chain F, 8 interactions with chain E, Hydrophobic interactions: R:A.19, R:I.23, R:I.23, F:I.15, F:A.27, F:V.28, F:I.31, E:F.10, E:I.13, E:I.13, E:T.26, E:L.30 Salt bridges: F:R.19, E:R.18 pi-Stacking: F:W.20, F:W.20, E:Y.19 Metal complexes: F:H.24, E:H.23

1 x HEC: HEME C(Covalent)

HEC.95: 21 residues within 4Å: Chain P: A.62, C.63, S.65, C.66, H.67, T.72, T.74, N.75, L.78, D.79, L.80, T.84, L.85, A.88, L.98, Y.101, M.102, Y.108, H.118, I.141, I.145 17 PLIP interactions: 17 interactions with chain P, Hydrophobic interactions: P:T.72, P:N.75, P:L.78, P:L.80, P:L.85, P:L.98, P:Y.101, P:Y.101, P:I.141, P:I.145 Hydrogen bonds: P:N.75, P:D.79, P:Y.108 pi-Stacking: P:Y.101, P:H.118 Metal complexes: P:H.67, P:H.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Structural insights into the light-driven auto-assembly process of the water-oxidizing Mn4CaO5-cluster in photosystem II. Elife (2017)

Release Date

2017-08-02

Peptides

Photosystem II protein D1 1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center X protein: Q
Photosystem II protein Y: R
Photosystem II reaction center protein Ycf12: S
Photosystem II reaction center protein Z: T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
a

B
b

C
c

D
d

E
e

F
f

G
h

H
i

I
j

J
k

K
l

L
m

M
o

N
t

O
u

P
v

Q
x

R
r

S
y

T
z

Membrane

We predict this structure to be a membrane protein.
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Photosystem II protein D1 1

Photosystem II CP47 reaction center protein

Photosystem II CP43 reaction center protein

Photosystem II D2 protein

Cytochrome b559 subunit alpha

Cytochrome b559 subunit beta

Photosystem II reaction center protein H

Photosystem II reaction center protein I

Photosystem II reaction center protein J

Photosystem II reaction center protein K

Photosystem II reaction center protein L

Photosystem II reaction center protein M

Photosystem II manganese-stabilizing polypeptide

Photosystem II reaction center protein T

Photosystem II 12 kDa extrinsic protein

Cytochrome c-550

Photosystem II reaction center X protein

Photosystem II protein Y

Photosystem II reaction center protein Ycf12

Photosystem II reaction center protein Z

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