- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x FE2: FE (II) ION(Non-covalent)
FE2.1: 5 residues within 4Å:- Chain A: H.215, H.272
- Chain D: H.204, H.258
- Ligands: BCT.4
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.215, A:H.272, D:H.204, D:H.258
- 3 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: N.181, H.332, E.333
- Chain D: K.307
Ligand excluded by PLIPCL.3: 5 residues within 4Å:- Chain A: H.337, N.338, F.339
- Chain C: G.335, E.336
Ligand excluded by PLIPCL.120: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 1 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.4: 9 residues within 4Å:- Chain A: H.215, V.219, E.244, Y.246, H.272
- Chain D: H.204, Y.234, H.258
- Ligands: FE2.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.246
- Water bridges: A:E.244
- 35 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.5: 30 residues within 4Å:- Chain A: F.119, Y.147, P.150, L.151, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, V.283, A.286, A.287, I.290
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.6, CLA.7, PHO.8, CLA.84, LHG.90
19 PLIP interactions:15 interactions with chain A, 1 interactions with chain N, 3 interactions with chain D,- Hydrophobic interactions: A:F.119, A:P.150, A:F.182, A:M.183, A:F.186, A:Q.187, A:I.192, A:I.192, A:L.193, A:V.202, A:V.205, A:F.206, A:I.290, N:F.17, D:L.172, D:L.172, D:L.195
- Water bridges: A:I.290
- Metal complexes: A:H.198
CLA.6: 20 residues within 4Å:- Chain A: F.48, V.157, M.172, I.176, T.179, F.180, F.182, M.183
- Chain D: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.5, PHO.8, SQD.16, CLA.84, PL9.87, LHG.90, LHG.110
6 PLIP interactions:4 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:F.48, A:V.157, A:F.180, A:F.182, D:V.191
- Metal complexes: H2O.5
CLA.7: 20 residues within 4Å:- Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, W.278
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.5, PHO.9, PL9.19, DGD.76, CLA.84, LHG.95, LMG.104
13 PLIP interactions:7 interactions with chain D, 5 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: D:F.147, D:F.147, D:I.168, D:F.169, D:F.171, D:L.172, D:L.172, A:V.202, A:F.206, A:L.210, A:W.278
- pi-Stacking: A:F.206
- Metal complexes: H2O.5
CLA.10: 27 residues within 4Å:- Chain A: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.16, V.20
- Ligands: BCR.11, LMG.58, CLA.63, CLA.64, DGD.74, UNL.103
17 PLIP interactions:11 interactions with chain A, 6 interactions with chain H,- Hydrophobic interactions: A:P.39, A:T.40, A:F.93, A:P.95, A:I.96, A:W.97, A:W.97, A:L.121, H:V.11, H:V.12, H:F.15, H:F.15, H:V.16, H:V.20
- Hydrogen bonds: A:I.96
- Salt bridges: A:H.118
- Metal complexes: A:H.118
CLA.22: 9 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, I.43
- Ligands: CLA.23, HTG.46, BCR.101
8 PLIP interactions:3 interactions with chain G, 4 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: G:F.40, G:F.40, G:I.43, B:W.184, B:P.186, B:F.189, B:F.189
- Metal complexes: H2O.14
CLA.23: 26 residues within 4Å:- Chain B: G.188, F.189, G.196, V.197, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250, T.254
- Chain D: L.148
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.22, CLA.24, CLA.26, CLA.30, BCR.101, DGD.102
18 PLIP interactions:14 interactions with chain B, 3 interactions with chain G, 1 interactions with chain D,- Hydrophobic interactions: B:F.189, B:F.189, B:F.189, B:A.199, B:H.200, B:A.204, B:V.207, B:F.245, B:F.246, B:F.246, B:F.249, B:F.249, B:V.250, G:F.37, G:I.44, G:I.44, D:L.148
- Metal complexes: B:H.200
CLA.24: 22 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.251, T.261
- Chain G: M.34, F.37, L.38
- Ligands: CLA.23, CLA.25, CLA.26, CLA.27, CLA.31
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain G,- Hydrophobic interactions: B:L.68, B:L.148, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:A.247, B:V.251, G:F.37, G:L.38
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.25: 24 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.144, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.24, CLA.26, CLA.28, CLA.32, CLA.33, CLA.34, CLA.36, UNL.55
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:F.64, B:L.144, B:L.147, B:L.148, B:V.244, B:A.247, B:V.251, B:F.457, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.26: 26 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, C.149, A.204
- Ligands: CLA.23, CLA.24, CLA.25, CLA.27, CLA.31, CLA.33, CLA.36, BCR.40, UNL.55
11 PLIP interactions:11 interactions with chain B,- Hydrophobic interactions: B:T.26, B:V.29, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.27: 23 residues within 4Å:- Chain B: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.24, CLA.26, CLA.37, BCR.40, UNL.55
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:L.68, B:V.70, B:W.90, B:W.90, B:W.90, B:A.98, B:V.101, B:L.102, B:L.148, B:L.148, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.28: 28 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain D: F.186, T.267, M.271
- Chain K: F.31, F.35
- Chain L: F.14
- Ligands: CLA.25, CLA.34, BCR.38, BCR.39, LMG.42, LHG.89
17 PLIP interactions:11 interactions with chain B, 1 interactions with chain L, 2 interactions with chain D, 2 interactions with chain K, 1 Ligand-Water interactions,- Hydrophobic interactions: B:W.32, B:Y.39, B:F.60, B:F.60, B:F.60, B:F.324, B:W.449, B:W.449, B:W.449, L:F.14, D:F.186, D:T.267, K:F.31, K:F.35
- Hydrogen bonds: B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.14
CLA.29: 28 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: L.79, F.110, I.113, M.116, L.117, F.120, I.140
- Chain G: L.42, L.45
- Ligands: CLA.30, CLA.31, CLA.85, UNL.92, UNL.93, DGD.102
20 PLIP interactions:10 interactions with chain B, 8 interactions with chain D, 2 interactions with chain G,- Hydrophobic interactions: B:A.242, B:F.245, B:F.246, B:F.462, B:F.462, B:I.466, B:L.473, D:L.79, D:F.110, D:F.110, D:F.110, D:I.113, D:M.116, D:L.117, D:I.140, G:L.42, G:L.45
- Hydrogen bonds: B:S.238
- Water bridges: B:S.239
- Metal complexes: B:H.465
CLA.30: 23 residues within 4Å:- Chain B: F.138, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain D: F.110
- Chain G: T.26, T.27, L.29, M.30, F.33, M.34
- Ligands: CLA.23, CLA.29, CLA.31, UNL.93, BCR.101
14 PLIP interactions:10 interactions with chain B, 3 interactions with chain G, 1 interactions with chain D,- Hydrophobic interactions: B:F.138, B:F.138, B:F.138, B:V.207, B:A.211, B:F.214, B:L.224, B:L.228, G:L.29, G:M.30, G:F.33, D:F.110
- Salt bridges: B:H.215
- Metal complexes: B:H.215
CLA.31: 20 residues within 4Å:- Chain B: L.134, M.137, F.138, H.141, L.142, A.145, L.228, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.24, CLA.26, CLA.29, CLA.30, CLA.33, CLA.36, BCR.101
9 PLIP interactions:8 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:A.145, B:L.228, B:M.230, B:T.235
- Hydrogen bonds: B:H.141
- Metal complexes: H2O.14
CLA.32: 24 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Chain L: F.21
- Ligands: CLA.25, CLA.33, CLA.34, CLA.35, BCR.39, LHG.89, LHG.110
15 PLIP interactions:14 interactions with chain B, 1 interactions with chain L,- Hydrophobic interactions: B:W.4, B:W.4, B:L.237, B:L.237, B:I.241, B:F.457, B:F.461, B:F.461, B:F.463, L:F.21
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.33: 21 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, A.21, H.22, H.25, T.26, I.233, V.236, L.237, S.240, I.241, V.244
- Ligands: CLA.25, CLA.26, CLA.31, CLA.32, CLA.34, CLA.35, CLA.36
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:H.8, B:L.11, B:I.12, B:L.18, B:A.21, B:H.22, B:H.25, B:T.26, B:I.233, B:I.233, B:V.236, B:L.237, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.34: 15 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Chain L: F.14
- Ligands: CLA.25, CLA.28, CLA.32, CLA.33, CLA.35, BCR.38, BCR.39, LMG.42, LHG.89
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain L,- Hydrophobic interactions: B:V.29, B:W.32, B:W.32, B:F.461, B:F.461, L:F.14
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.35: 20 residues within 4Å:- Chain B: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.8, V.10
- Chain L: F.21, L.25
- Ligands: CLA.32, CLA.33, CLA.34, BCR.38, SQD.41, LMG.42, LHG.110
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain L,- Hydrophobic interactions: B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:F.21, L:L.25
- Metal complexes: B:H.8
CLA.36: 19 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.10, L.13, N.14
- Ligands: CLA.25, CLA.26, CLA.31, CLA.33, CLA.37, BCR.40
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.132, B:I.140, B:L.144, G:L.6, G:L.10, G:L.13, G:L.13, G:N.14
- Metal complexes: B:H.141
CLA.37: 17 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119, L.121, F.122
- Chain G: T.4, W.5, L.6, G.7, L.10
- Ligands: CLA.27, CLA.36, BCR.40, UNL.55
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.23, B:W.112, B:W.112, B:L.119, B:F.122, G:L.6, G:L.10
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
- Water bridges: G:L.6
CLA.59: 22 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, W.205, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.60, CLA.61, CLA.64, CLA.65, BCR.73
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:L.150, C:L.157, C:L.157, C:W.205, C:I.206, C:I.222, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278
- Hydrogen bonds: C:Y.279
- Metal complexes: C:H.219
CLA.60: 24 residues within 4Å:- Chain C: W.45, I.69, L.70, H.73, L.77, G.153, L.156, K.160, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.59, CLA.61, CLA.62, CLA.68, CLA.70
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:W.45, C:I.69, C:L.70, C:L.77, C:L.156, C:K.160, C:F.164, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.61: 19 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100, M.264
- Ligands: CLA.59, CLA.60, CLA.65, CLA.67, CLA.68, CLA.70, CLA.71, LMG.78
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:V.96
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.62: 20 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.60, CLA.66, CLA.68, DGD.75, DGD.76, LMG.77, LHG.91
13 PLIP interactions:10 interactions with chain C, 2 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:W.45, C:F.52, C:I.69, C:W.407, C:W.407, C:W.407, C:L.408, C:F.418, C:F.418, C:F.418, J:P.17, J:V.21
- Metal complexes: H2O.24
CLA.63: 22 residues within 4Å:- Chain A: F.33, L.121, S.124, C.125, M.127, G.128, W.131
- Chain C: F.246, S.255, Y.256, G.259, A.260, L.420, H.423, L.424, A.427, R.431
- Chain H: F.23
- Ligands: CLA.10, LMG.58, CLA.65, BCR.73
17 PLIP interactions:6 interactions with chain A, 10 interactions with chain C, 1 interactions with chain H,- Hydrophobic interactions: A:F.33, A:L.121, A:W.131, A:W.131, A:W.131, C:F.246, C:Y.256, C:Y.256, C:L.420, C:L.424, H:F.23
- pi-Stacking: A:W.131
- Hydrogen bonds: C:Y.256
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
CLA.64: 20 residues within 4Å:- Chain C: L.143, L.147, L.195, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.10, CLA.59, CLA.65, BCR.73, DGD.74, LMT.79
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:L.147, C:L.147, C:L.195, C:W.232
- Hydrogen bonds: C:F.239
- Metal complexes: C:H.233
CLA.65: 22 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, C.226, W.241, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.59, CLA.61, CLA.63, CLA.64, CLA.67, BCR.73
15 PLIP interactions:14 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.150, C:W.241, C:F.246, C:F.246, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:A.260, C:L.261
- Metal complexes: H2O.23
CLA.66: 23 residues within 4Å:- Chain C: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Chain J: L.24
- Ligands: SQD.12, CLA.62, CLA.67, CLA.68, CLA.69, LMG.77, LHG.91
11 PLIP interactions:1 interactions with chain J, 10 interactions with chain C,- Hydrophobic interactions: J:L.24, C:L.254, C:L.254, C:L.258, C:F.419, C:W.425
- Hydrogen bonds: C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.67: 26 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, M.139, I.142, H.146, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.61, CLA.65, CLA.66, CLA.68, CLA.69, CLA.70
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:A.34, C:H.38, C:Y.131, C:Y.131, C:W.133, C:W.133, C:W.133, C:I.142, C:L.150, C:Y.253, C:L.254
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.68: 18 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, V.21, L.24
- Ligands: CLA.60, CLA.61, CLA.62, CLA.66, CLA.67, CLA.69, LHG.91
13 PLIP interactions:3 interactions with chain J, 10 interactions with chain C,- Hydrophobic interactions: J:P.20, J:V.21, J:L.24, C:L.41, C:I.42, C:I.42, C:W.45, C:L.261, C:F.418, C:F.419, C:F.419
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.69: 33 residues within 4Å:- Chain C: T.6, R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, L.41, A.105, G.108, F.109
- Chain J: F.23, L.24, A.27, F.28, W.30, Q.31
- Chain Q: I.19, I.20, L.23, N.29, L.30
- Chain S: V.20, V.23, P.24, A.28
- Ligands: CLA.66, CLA.67, CLA.68, BCR.109
22 PLIP interactions:3 interactions with chain S, 9 interactions with chain J, 3 interactions with chain Q, 7 interactions with chain C,- Hydrophobic interactions: S:V.23, S:P.24, S:A.28, J:F.23, J:F.23, J:L.24, J:A.27, J:F.28, J:W.30, J:Q.31, Q:I.19, Q:I.20, Q:L.30, C:W.17, C:L.24, C:L.24, C:L.41, C:F.109
- pi-Stacking: J:W.30, J:W.30
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
CLA.70: 19 residues within 4Å:- Chain C: H.35, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, I.152, G.153, L.156
- Ligands: CLA.60, CLA.61, CLA.67, CLA.71, BCR.72
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:H.35, C:Y.131, C:I.142, C:I.142, C:F.145, C:I.148, C:V.149, C:V.149, C:I.152, C:I.152, C:L.156
- Metal complexes: C:H.146
CLA.71: 16 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.61, CLA.70, BCR.72, LMG.78, LMG.128
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.106, C:L.107, C:Y.113, C:L.122, C:Y.125, C:F.129, C:F.129, C:F.129
- Salt bridges: C:H.114
- pi-Stacking: C:F.129
- Metal complexes: C:H.114
CLA.84: 29 residues within 4Å:- Chain A: M.183, F.206
- Chain D: L.35, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, S.272, A.273, V.276
- Ligands: CLA.5, CLA.6, CLA.7, PHO.9, PL9.19, LMG.104
16 PLIP interactions:16 interactions with chain D,- Hydrophobic interactions: D:L.35, D:L.112, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:W.181, D:T.182, D:V.191, D:V.191, D:V.194, D:V.194, D:L.195
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.85: 28 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Chain G: G.35, V.39
- Chain R: F.10, G.12, L.13, L.14, G.16, A.17, V.19
- Ligands: PL9.19, CLA.29, SQD.98, UNL.127
18 PLIP interactions:11 interactions with chain D, 6 interactions with chain R, 1 interactions with chain G,- Hydrophobic interactions: D:L.26, D:P.29, D:L.33, D:L.81, D:W.83, D:W.83, D:L.106, R:F.10, R:L.13, R:L.14, R:A.17, R:V.19, R:V.19, G:V.39
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
- 2 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.8: 28 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, M.172, G.175, V.205, P.279, V.283
- Chain D: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.5, CLA.6, SQD.16, LHG.90
19 PLIP interactions:16 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:I.115, A:F.119, A:Y.126, A:A.146, A:Y.147, A:P.150, A:F.158, A:V.205, A:P.279, A:V.283, D:L.195, D:A.198, D:A.202
- Hydrogen bonds: A:Q.130, A:Y.147
- pi-Stacking: A:Y.147
PHO.9: 32 residues within 4Å:- Chain A: F.206, A.209, L.210, A.213, M.214, F.255, L.258
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, A.138, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.7, PL9.19, CLA.84
22 PLIP interactions:19 interactions with chain D, 3 interactions with chain A- Hydrophobic interactions: D:A.31, D:A.34, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:A.138, D:P.139, D:F.143, D:P.265, D:L.269, A:F.206, A:A.209, A:A.213
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136, D:F.136
- 11 x BCR: BETA-CAROTENE(Non-covalent)
BCR.11: 18 residues within 4Å:- Chain A: V.35, I.38, L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, W.105, L.106
- Chain H: F.15
- Ligands: CLA.10, SQD.16, UNL.20, UNL.103, HTG.116
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain H- Hydrophobic interactions: A:V.35, A:I.38, A:L.42, A:A.43, A:I.50, A:A.51, A:I.96, A:W.105, A:W.105, A:L.106, H:F.15
BCR.38: 12 residues within 4Å:- Chain B: M.24, L.28, C.111, W.114
- Chain L: L.6, A.10
- Ligands: CLA.28, CLA.34, CLA.35, BCR.39, SQD.41, LMG.42
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain L- Hydrophobic interactions: B:L.28, B:L.28, B:W.114, B:W.114, L:L.6, L:A.10
BCR.39: 15 residues within 4Å:- Chain B: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: CLA.28, CLA.32, CLA.34, BCR.38, SQD.41, LMG.42
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.28, B:W.32, B:I.100, B:L.108
BCR.40: 11 residues within 4Å:- Chain B: L.105, L.108, A.109, C.111, W.112, V.115
- Ligands: CLA.26, CLA.27, CLA.36, CLA.37, UNL.55
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.105, B:V.115
BCR.72: 16 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Chain J: Y.6
- Chain S: V.51, G.55, N.58, F.59
- Ligands: CLA.70, CLA.71, LMG.78, BCR.109
9 PLIP interactions:2 interactions with chain S, 7 interactions with chain C- Hydrophobic interactions: S:N.58, S:F.59, C:F.94, C:V.98, C:I.102, C:V.106, C:V.106, C:L.107, C:F.129
BCR.73: 18 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: F.23, L.24
- Ligands: CLA.59, CLA.63, CLA.64, CLA.65
11 PLIP interactions:9 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: C:I.191, C:F.192, C:Y.194, C:L.195, C:L.195, C:I.206, C:V.209, C:I.222, C:F.246, H:F.23, H:L.24
BCR.86: 18 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, W.94, F.103
- Chain F: P.28, T.29, F.32, L.33, I.36
- Chain I: V.20, V.24
- Ligands: DGD.88, LMG.104
13 PLIP interactions:7 interactions with chain D, 5 interactions with chain F, 1 interactions with chain I- Hydrophobic interactions: D:Y.32, D:L.33, D:L.39, D:F.91, D:W.94, D:F.103, D:F.103, F:P.28, F:F.32, F:F.32, F:L.33, F:I.36, I:V.20
BCR.101: 13 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, F.40, I.43
- Chain R: T.1, L.6
- Ligands: CLA.22, CLA.23, CLA.30, CLA.31
7 PLIP interactions:1 interactions with chain R, 6 interactions with chain G- Hydrophobic interactions: R:L.6, G:F.37, G:F.37, G:F.37, G:F.37, G:F.40, G:I.43
BCR.108: 21 residues within 4Å:- Chain C: F.44
- Chain I: A.13, T.14, G.17, M.18
- Chain J: I.19, L.22, F.23, A.25, L.26, F.28, V.29
- Chain Q: I.12, G.13, G.16, P.17
- Chain S: S.16, F.17
- Ligands: SQD.12, UNL.107, BCR.109
11 PLIP interactions:2 interactions with chain Q, 6 interactions with chain J, 1 interactions with chain I, 1 interactions with chain S, 1 interactions with chain C- Hydrophobic interactions: Q:I.12, Q:P.17, J:I.19, J:L.22, J:F.23, J:A.25, J:L.26, J:V.29, I:A.13, S:F.17, C:F.44
BCR.109: 18 residues within 4Å:- Chain C: A.37, G.40, L.41, F.44, L.101, S.104, A.105, G.108, V.112, A.115
- Chain J: Y.6, F.23
- Chain S: L.12, V.13, S.16
- Ligands: CLA.69, BCR.72, BCR.108
14 PLIP interactions:2 interactions with chain S, 4 interactions with chain J, 8 interactions with chain C- Hydrophobic interactions: S:L.12, S:V.13, J:Y.6, J:Y.6, J:F.23, J:F.23, C:A.37, C:L.41, C:F.44, C:F.44, C:L.101, C:A.105, C:V.112, C:A.115
BCR.118: 10 residues within 4Å:- Chain A: L.28
- Chain N: F.8, A.11, A.15, F.17, F.18, F.22
- Ligands: SQD.16, LHG.90, SQD.111
6 PLIP interactions:5 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: N:A.11, N:F.18, N:F.18, N:F.22, N:F.22, A:L.28
- 5 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.12: 22 residues within 4Å:- Chain A: L.200, G.204, N.267, S.270, F.273, F.274, A.277, W.278, V.281, G.282
- Chain C: Q.10, A.16, W.18
- Chain D: F.222, R.223
- Chain I: I.21
- Chain J: F.28
- Ligands: CLA.66, LMG.77, LHG.91, UNL.107, BCR.108
15 PLIP interactions:8 interactions with chain A, 3 interactions with chain C, 1 interactions with chain I, 1 interactions with chain J, 2 interactions with chain D- Hydrophobic interactions: A:F.274, A:A.277, A:W.278, A:W.278, A:V.281, C:W.18, I:I.21, J:F.28
- Hydrogen bonds: A:N.267, A:S.270, C:Q.10
- Water bridges: A:N.266, C:W.17, D:F.222
- Salt bridges: D:R.223
SQD.16: 18 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, V.30, I.38, L.41, L.42, T.45, I.46
- Chain N: F.22
- Ligands: CLA.6, PHO.8, BCR.11, UNL.20, LHG.90, UNL.103, BCR.118
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.28, A:L.28, A:V.30, A:I.38, A:L.41, A:T.45, A:I.46
- Hydrogen bonds: A:N.26, A:R.27, A:L.28
SQD.41: 9 residues within 4Å:- Chain B: R.17, L.28, S.103, F.107, W.114
- Chain K: R.7
- Ligands: CLA.35, BCR.38, BCR.39
9 PLIP interactions:3 interactions with chain K, 6 interactions with chain B- Hydrogen bonds: K:R.7
- Water bridges: K:N.4, B:R.17, B:R.17
- Salt bridges: K:R.7, B:R.17
- Hydrophobic interactions: B:L.28, B:F.107, B:F.107
SQD.98: 16 residues within 4Å:- Chain D: R.14, R.16
- Chain F: F.15, T.16, V.17, V.20
- Chain R: L.22, T.23, V.26, I.30, D.34
- Chain T: Q.29, L.33
- Ligands: PL9.19, CLA.85, DGD.88
9 PLIP interactions:3 interactions with chain F, 3 interactions with chain R, 2 interactions with chain D, 1 interactions with chain T- Hydrophobic interactions: F:V.20, R:V.26, R:V.26
- Hydrogen bonds: F:V.17, D:R.14, T:Q.29
- Water bridges: F:R.18, R:D.34
- Salt bridges: D:R.16
SQD.111: 11 residues within 4Å:- Chain K: R.14, Y.18
- Chain L: L.16, Y.26
- Chain N: C.12, A.15, L.16, F.19, F.23
- Ligands: UNL.113, BCR.118
9 PLIP interactions:4 interactions with chain K, 4 interactions with chain N, 1 interactions with chain L- Hydrophobic interactions: K:Y.18, N:A.15, N:F.19, N:F.19, N:F.19, L:L.16
- Hydrogen bonds: K:R.14, K:R.14
- Salt bridges: K:R.14
- 20 x GOL: GLYCEROL(Non-functional Binders)
GOL.13: 5 residues within 4Å:- Chain A: P.56, D.103, L.106
- Chain M: Q.107
- Ligands: HTG.116
Ligand excluded by PLIPGOL.14: 7 residues within 4Å:- Chain A: G.74, N.75, N.76
- Chain D: S.290, Q.291
- Chain L: M.1
- Chain N: E.2
Ligand excluded by PLIPGOL.15: 8 residues within 4Å:- Chain A: V.313, I.314, N.315
- Chain D: W.48, G.52
- Chain E: Y.56, I.63
- Chain P: K.129
Ligand excluded by PLIPGOL.47: 7 residues within 4Å:- Chain B: W.274, D.275, R.356, R.357, M.358, P.359
- Chain D: E.327
Ligand excluded by PLIPGOL.48: 8 residues within 4Å:- Chain B: R.384, A.385, E.386, S.387, Q.393
- Chain O: L.17, Y.21, G.22
Ligand excluded by PLIPGOL.49: 8 residues within 4Å:- Chain B: I.12, N.13, P.15, A.131, L.132, G.231, N.232, I.233
Ligand excluded by PLIPGOL.50: 7 residues within 4Å:- Chain B: E.386
- Chain O: A.33, L.102, Y.103, K.104
- Chain P: P.50, S.51
Ligand excluded by PLIPGOL.51: 8 residues within 4Å:- Chain B: P.49, P.53, M.54, I.79, T.80, W.166, E.265, K.307
Ligand excluded by PLIPGOL.52: 6 residues within 4Å:- Chain B: K.331, N.437, D.439
- Chain D: I.289
- Chain L: E.2, V.3
Ligand excluded by PLIPGOL.57: 3 residues within 4Å:- Chain B: Y.39
- Ligands: LMG.42, LMT.56
Ligand excluded by PLIPGOL.82: 6 residues within 4Å:- Chain C: I.301, R.302, K.305, E.371
- Chain P: N.49
- Ligands: HEC.121
Ligand excluded by PLIPGOL.83: 10 residues within 4Å:- Chain A: L.341, L.343
- Chain C: M.378, T.379, H.380, A.381, G.391, V.392, E.395
- Chain P: K.47
Ligand excluded by PLIPGOL.100: 6 residues within 4Å:- Chain A: A.309
- Chain F: R.44
- Chain P: L.3, E.23, L.27
- Ligands: CA.99
Ligand excluded by PLIPGOL.115: 3 residues within 4Å:- Chain M: P.18, R.40, Y.238
Ligand excluded by PLIPGOL.117: 5 residues within 4Å:- Chain D: S.252
- Chain K: T.15
- Chain N: R.24, E.25
- Ligands: LHG.90
Ligand excluded by PLIPGOL.119: 1 residues within 4Å:- Chain N: M.1
Ligand excluded by PLIPGOL.123: 7 residues within 4Å:- Chain P: N.13, S.14, E.15, P.65, N.68, E.70, G.71
Ligand excluded by PLIPGOL.124: 4 residues within 4Å:- Chain A: L.341
- Chain P: G.133, K.134, Y.137
Ligand excluded by PLIPGOL.125: 4 residues within 4Å:- Chain P: K.24, Q.25, E.28, K.110
Ligand excluded by PLIPGOL.126: 5 residues within 4Å:- Chain P: P.11, N.13, S.14, D.67, N.68
Ligand excluded by PLIP- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.17: 5 residues within 4Å:- Chain A: I.53, L.72, Y.73
- Chain D: R.294
- Ligands: HTG.116
8 PLIP interactions:4 interactions with chain A, 2 interactions with chain D, 2 interactions with chain M- Hydrophobic interactions: A:I.53, A:L.72
- Hydrogen bonds: A:Y.73, D:R.294, D:R.294
- Water bridges: A:L.72, M:G.110, M:G.110
LMT.43: 12 residues within 4Å:- Chain B: R.223, L.224, A.227, K.497, D.500
- Chain D: D.6, D.9
- Chain G: W.24, A.31, M.34
- Chain R: R.38
- Ligands: UNL.93
14 PLIP interactions:3 interactions with chain G, 3 interactions with chain D, 6 interactions with chain B, 2 interactions with chain R- Hydrophobic interactions: G:W.24, G:W.24, G:A.31, B:A.227
- Hydrogen bonds: D:R.2, D:D.6, D:D.9, B:R.223, B:K.497, B:D.500, R:R.38
- Salt bridges: B:R.223, B:K.497
- Water bridges: R:R.38
LMT.56: 5 residues within 4Å:- Chain B: S.35, Y.39, A.42, T.43
- Ligands: GOL.57
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Y.39
LMT.79: 8 residues within 4Å:- Chain A: E.15
- Chain C: W.241, R.244
- Chain H: L.24, S.25, G.26, R.30
- Ligands: CLA.64
8 PLIP interactions:4 interactions with chain C, 3 interactions with chain H, 1 interactions with chain A- Hydrophobic interactions: C:W.241, C:W.241, H:L.24
- Hydrogen bonds: C:R.244, C:R.244, H:R.30, A:E.15
- Water bridges: H:R.30
LMT.96: 7 residues within 4Å:- Chain E: F.31, W.35, S.39
- Chain F: F.41, I.42, Q.43
- Chain I: V.22
6 PLIP interactions:2 interactions with chain E, 3 interactions with chain F, 1 interactions with chain I- Hydrophobic interactions: E:F.31, F:F.41, I:V.22
- Water bridges: E:S.39
- Hydrogen bonds: F:Q.43, F:Q.43
LMT.112: 7 residues within 4Å:- Chain L: V.27, E.30, S.31, Q.32, Q.33, K.34
- Ligands: UNL.113
4 PLIP interactions:4 interactions with chain L- Hydrophobic interactions: L:V.27
- Hydrogen bonds: L:E.30, L:Q.32, L:K.34
- 1 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.18: 10 residues within 4Å:- Chain A: D.170, V.185, E.189, H.332, E.333, H.337, D.342, A.344
- Chain C: E.336, R.339
17 PLIP interactions:9 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: A:D.170, A:D.170, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, C:E.336, C:E.336, H2O.3, H2O.3, H2O.5, H2O.5
- Hydrogen bonds: C:R.339, C:R.339
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.19: 28 residues within 4Å:- Chain A: F.211, M.214, H.215, L.218, A.251, H.252, F.255, A.263, S.264, F.265, L.271, F.274
- Chain D: G.24, F.28, P.29, A.31, Y.32
- Chain F: A.21, T.24, L.25
- Chain R: T.23, L.27
- Ligands: CLA.7, PHO.9, CLA.84, CLA.85, LHG.95, SQD.98
19 PLIP interactions:2 interactions with chain D, 14 interactions with chain A, 2 interactions with chain R, 1 interactions with chain F- Hydrophobic interactions: D:P.29, D:A.31, A:F.211, A:L.218, A:L.218, A:A.251, A:H.252, A:F.255, A:F.255, A:F.255, A:F.265, A:L.271, A:L.271, A:F.274, A:F.274, R:T.23, R:L.27, F:L.25
- Hydrogen bonds: A:F.265
PL9.87: 33 residues within 4Å:- Chain A: F.52, I.53, I.77, I.176
- Chain D: M.188, M.189, A.192, G.193, L.199, L.200, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.23, V.26, L.29, L.30
- Chain N: F.10
- Ligands: CLA.6, LHG.90, LHG.110
29 PLIP interactions:5 interactions with chain A, 16 interactions with chain D, 4 interactions with chain K, 4 interactions with chain N- Hydrophobic interactions: A:F.52, A:F.52, A:I.53, A:I.77, A:I.176, D:M.188, D:M.189, D:L.199, D:L.200, D:I.203, D:T.207, D:W.243, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, K:L.23, K:V.26, K:L.29, K:L.30, N:F.10, N:F.10, N:F.10, N:F.10
- Hydrogen bonds: D:T.207, D:F.251
- pi-Stacking: D:F.251
- 9 x UNL: UNKNOWN LIGAND
UNL.20: 6 residues within 4Å:- Chain A: R.16, F.17, W.20
- Ligands: BCR.11, SQD.16, UNL.103
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.17, A:W.20, A:W.20
- Salt bridges: A:R.16
UNL.55: 9 residues within 4Å:- Chain B: W.90, L.148, F.161
- Ligands: CLA.25, CLA.26, CLA.27, CLA.37, BCR.40, HTG.54
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.148, B:F.161
UNL.92: 8 residues within 4Å:- Chain D: W.22, S.23, L.26, E.121
- Chain R: L.20
- Ligands: CLA.29, UNL.93, UNL.127
3 PLIP interactions:1 interactions with chain R, 2 interactions with chain D- Hydrophobic interactions: R:L.20, D:L.26, D:E.121
UNL.93: 11 residues within 4Å:- Chain B: A.227
- Chain D: F.5, D.9, K.13, W.22
- Chain R: L.20, F.24
- Ligands: CLA.29, CLA.30, LMT.43, UNL.92
9 PLIP interactions:4 interactions with chain R, 5 interactions with chain D- Hydrophobic interactions: R:L.20, R:L.20, R:F.24, R:F.24, D:F.5, D:W.22, D:W.22
- Hydrogen bonds: D:K.13
- Salt bridges: D:K.13
UNL.103: 8 residues within 4Å:- Chain A: A.100
- Chain H: M.1, T.3, L.4
- Ligands: CLA.10, BCR.11, SQD.16, UNL.20
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:T.3, H:L.4
- Hydrogen bonds: H:T.3
UNL.105: 5 residues within 4Å:- Chain I: G.25, Y.29, Y.32
- Ligands: DGD.75, LMG.77
1 PLIP interactions:1 interactions with chain I- Hydrophobic interactions: I:Y.32
UNL.107: 6 residues within 4Å:- Chain A: W.278
- Chain C: W.17
- Chain J: F.36
- Ligands: SQD.12, DGD.76, BCR.108
7 PLIP interactions:1 interactions with chain D, 2 interactions with chain C, 3 interactions with chain J, 1 interactions with chain A- Water bridges: D:R.223
- Hydrophobic interactions: C:W.17, C:W.17, J:F.36, J:F.36, A:W.278
- Hydrogen bonds: J:F.36
UNL.113: 3 residues within 4Å:- Chain L: I.23
- Ligands: SQD.111, LMT.112
2 PLIP interactions:2 interactions with chain L- Hydrophobic interactions: L:I.23, L:I.23
UNL.127: 9 residues within 4Å:- Chain D: W.83, G.89
- Chain R: I.11, S.15, G.16, V.19, L.20
- Ligands: CLA.85, UNL.92
3 PLIP interactions:2 interactions with chain R, 1 interactions with chain D- Hydrophobic interactions: R:V.19, R:L.20, D:W.83
- 3 x CA: CALCIUM ION(Non-covalent)
CA.21: 1 residues within 4Å:- Chain B: N.437
No protein-ligand interaction detected (PLIP)CA.99: 2 residues within 4Å:- Chain F: R.44
- Ligands: GOL.100
5 PLIP interactions:1 interactions with chain F, 4 Ligand-Water interactions- Metal complexes: F:R.44, H2O.33, H2O.34, H2O.49, H2O.49
CA.114: 3 residues within 4Å:- Chain M: T.136, N.198, V.199
5 PLIP interactions:2 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: M:T.136, M:V.199, H2O.38, H2O.39, H2O.42
- 6 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.42: 19 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, A.453
- Chain D: I.274
- Chain K: F.35
- Chain L: N.4, L.6, A.10, L.13
- Ligands: CLA.28, CLA.34, CLA.35, BCR.38, BCR.39, GOL.57, LHG.110
10 PLIP interactions:5 interactions with chain B, 1 interactions with chain K, 3 interactions with chain L, 1 interactions with chain D- Hydrophobic interactions: B:A.453, K:F.35, L:L.13, D:I.274
- Hydrogen bonds: B:T.326, L:N.4
- Water bridges: B:T.326, B:T.326, B:T.326, L:N.4
LMG.58: 21 residues within 4Å:- Chain A: F.93, W.97, E.98, F.117, L.121, S.124, F.155
- Chain C: L.195, L.196, K.197, P.199, F.200, E.203, W.205, M.263, F.266
- Chain H: K.5, Y.9
- Ligands: CLA.10, CLA.63, DGD.74
16 PLIP interactions:7 interactions with chain C, 5 interactions with chain A, 4 interactions with chain H- Hydrophobic interactions: C:F.200, C:W.205, C:F.266, C:F.266, A:F.93, A:F.117, A:F.155, A:F.155
- Hydrogen bonds: C:E.203, A:W.97, H:K.5, H:K.5, H:Y.9, H:Y.9
- Water bridges: C:S.198, C:S.198
LMG.77: 14 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.21
- Chain J: D.14, V.18, V.21
- Chain Q: Q.5, I.9
- Ligands: SQD.12, CLA.62, CLA.66, DGD.75, UNL.105
8 PLIP interactions:1 interactions with chain I, 3 interactions with chain J, 2 interactions with chain C, 2 interactions with chain Q- Hydrophobic interactions: I:I.21, J:V.18, J:V.18, J:V.21, Q:Q.5, Q:I.9
- Water bridges: C:H.56
- Salt bridges: C:H.56
LMG.78: 14 residues within 4Å:- Chain C: V.43, W.79, D.89, F.91, P.92, V.95, V.99, H.100, S.103
- Chain S: F.59
- Ligands: CLA.61, CLA.71, BCR.72, HTG.80
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:V.43, C:W.79, C:W.79, C:P.92, C:V.99, C:V.99
LMG.104: 18 residues within 4Å:- Chain D: Y.57, G.60, C.61, N.62, F.63
- Chain F: T.29, I.36, M.39, Q.40
- Chain I: F.27, G.30, A.31, L.35
- Ligands: CLA.7, DGD.76, CLA.84, BCR.86, MG.106
14 PLIP interactions:3 interactions with chain F, 4 interactions with chain I, 7 interactions with chain D- Hydrophobic interactions: F:T.29, I:F.27, D:F.63, D:F.63, D:F.63, D:F.63, D:F.63
- Hydrogen bonds: F:M.39, F:Q.40, I:G.30, D:F.63
- Water bridges: I:F.27, I:G.36, D:N.62
LMG.128: 11 residues within 4Å:- Chain C: A.105, F.109, Y.113, R.117
- Chain S: Y.27, W.33, K.37, I.40, F.41, W.47
- Ligands: CLA.71
12 PLIP interactions:4 interactions with chain C, 8 interactions with chain S- Hydrophobic interactions: C:A.105, C:F.109, S:F.41, S:F.41, S:W.47, S:W.47
- Hydrogen bonds: C:Y.113, C:R.117, S:Y.27, S:W.33
- Salt bridges: S:K.37, S:K.37
- 10 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.44: 4 residues within 4Å:- Chain B: S.73, S.75, W.77, E.93
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.73, B:E.93, B:E.93
- Water bridges: B:W.77
HTG.45: 11 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, F.429, E.430, F.431
- Chain M: Q.174, A.175, K.176, E.177
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain M- Hydrophobic interactions: B:Y.419
- Hydrogen bonds: B:K.340, B:K.340, B:K.422, B:E.430, B:F.431, B:F.431, M:Q.174, M:K.176
- Water bridges: M:Q.174, M:E.177
HTG.46: 4 residues within 4Å:- Chain B: W.184, A.203, I.206
- Ligands: CLA.22
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.184, B:A.203, B:I.206, B:I.206
HTG.53: 6 residues within 4Å:- Chain B: W.74, D.86, G.88, F.89, L.97
- Ligands: HTG.54
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.74
- Hydrogen bonds: B:D.86, B:G.88, B:G.88
HTG.54: 5 residues within 4Å:- Chain B: D.86, G.88, F.89
- Ligands: HTG.53, UNL.55
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.89
- Water bridges: B:W.90
HTG.80: 5 residues within 4Å:- Chain C: W.79, F.163, F.164, G.165
- Ligands: LMG.78
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:W.79, C:F.163
- Water bridges: C:K.160
HTG.81: 6 residues within 4Å:- Chain C: V.158, F.163, T.182, N.183, P.184, I.220
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.158, C:F.163
- Hydrogen bonds: C:N.183, C:P.184
HTG.94: 5 residues within 4Å:- Chain D: G.3, W.4, F.5
- Chain G: W.24, P.28
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain G- Hydrophobic interactions: D:F.5, G:W.24, G:W.24
- Hydrogen bonds: D:W.4, D:F.5
HTG.116: 6 residues within 4Å:- Chain A: Y.73
- Chain M: G.110, G.111
- Ligands: BCR.11, GOL.13, LMT.17
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain M- Water bridges: A:Y.73, A:Y.73, M:Q.107, M:Q.107, M:G.110, M:G.111
HTG.122: 6 residues within 4Å:- Chain P: A.89, E.90, R.96, S.97, D.99, I.100
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:D.99
- 5 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.74: 31 residues within 4Å:- Chain A: L.91, S.148, L.151, A.152, F.155, I.160, I.163
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.10, LMG.58, CLA.64
22 PLIP interactions:5 interactions with chain A, 17 interactions with chain C- Hydrophobic interactions: A:L.151, A:L.151, A:F.155, A:I.160, A:I.163, C:P.199, C:F.200, C:F.200, C:W.205, C:V.207, C:F.266, C:L.420
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:T.277, C:T.277, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200, C:D.342
DGD.75: 19 residues within 4Å:- Chain A: H.195, F.197
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411
- Chain I: F.28, Y.32
- Ligands: CLA.62, DGD.76, LMG.77, UNL.105
16 PLIP interactions:12 interactions with chain C, 2 interactions with chain I, 2 interactions with chain A- Hydrophobic interactions: C:L.386, I:F.28, I:F.28, A:F.197, A:F.197
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402, C:W.407
- Water bridges: C:K.61, C:E.65, C:Q.66, C:G.67, C:G.67
DGD.76: 29 residues within 4Å:- Chain A: P.196, Q.199, L.200, W.278, F.300, N.301, F.302, S.305
- Chain C: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain I: F.28, A.31, Y.32, G.36, S.37, S.38, L.39
- Chain P: Q.34
- Ligands: CLA.7, CLA.62, DGD.75, LHG.91, LMG.104, UNL.107
17 PLIP interactions:5 interactions with chain A, 6 interactions with chain C, 4 interactions with chain I, 2 interactions with chain P- Hydrophobic interactions: A:P.196, A:L.200, A:W.278, A:F.300, I:F.28
- Hydrogen bonds: A:S.305, C:N.387, C:N.397, C:S.398, C:V.399, I:Y.32, I:G.36, P:Q.34, P:Q.34
- Water bridges: C:N.397, C:N.400, I:S.38
DGD.88: 11 residues within 4Å:- Chain D: T.40, G.89, D.90, F.91, T.92
- Chain E: F.37, D.45, V.46, F.47
- Ligands: BCR.86, SQD.98
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain E- Hydrophobic interactions: D:T.40, D:F.91, D:F.91, E:F.37
- Hydrogen bonds: D:T.92
DGD.102: 26 residues within 4Å:- Chain B: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain D: G.76, H.77, I.113, V.144, I.149, L.152, G.153, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.23, CLA.29
22 PLIP interactions:6 interactions with chain D, 8 interactions with chain G, 8 interactions with chain B- Hydrophobic interactions: D:I.149, D:L.152, D:L.152, D:L.281, G:L.45, G:Y.48, G:Y.48, G:Y.48, B:Y.257, B:T.451, B:A.455, B:F.462
- Hydrogen bonds: D:H.77, D:H.77, G:N.49, G:V.59, G:S.60, G:W.61, B:Y.192, B:Y.257
- Water bridges: B:Y.192, B:Y.192
- 5 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.89: 21 residues within 4Å:- Chain A: S.232, N.234
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467
- Chain D: Y.131, I.134, W.256, F.259, L.262, T.267
- Chain K: L.23
- Chain L: F.14, P.18
- Ligands: CLA.28, CLA.32, CLA.34, LHG.110
18 PLIP interactions:10 interactions with chain B, 3 interactions with chain D, 3 interactions with chain A, 1 interactions with chain K, 1 interactions with chain L- Hydrophobic interactions: B:W.4, B:W.4, B:Y.5, B:L.460, B:F.463, K:L.23, L:P.18
- Hydrogen bonds: B:Y.5, A:S.232, A:N.234
- Water bridges: B:R.6, B:R.6, B:R.6, D:R.129, D:Y.131, D:Y.131, A:N.234
- Salt bridges: B:R.6
LHG.90: 27 residues within 4Å:- Chain A: R.129
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.13, T.15, S.16, Y.18, L.19, L.22, L.29
- Chain N: F.17, A.20
- Ligands: CLA.5, CLA.6, PHO.8, SQD.16, PL9.87, LHG.110, GOL.117, BCR.118
18 PLIP interactions:6 interactions with chain K, 7 interactions with chain D, 4 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: K:Y.18, K:L.22, K:L.29, D:F.247, D:F.251, D:F.260, D:F.260, N:F.17, N:F.17, N:F.17, N:A.20
- Hydrogen bonds: K:N.13, K:N.13, K:S.16, D:S.252, D:S.252, D:N.253
- Water bridges: A:S.232
LHG.91: 20 residues within 4Å:- Chain A: R.140, W.142, F.273, A.276, F.285
- Chain C: F.15, W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.12, CLA.62, CLA.66, CLA.68, DGD.76
13 PLIP interactions:4 interactions with chain C, 4 interactions with chain A, 5 interactions with chain D- Hydrophobic interactions: C:W.18, C:W.18, A:A.276, A:F.285
- Hydrogen bonds: C:R.429, C:R.429, D:N.210, D:A.219, D:S.220, D:T.221
- Water bridges: A:R.140, D:T.221
- Salt bridges: A:R.140
LHG.95: 19 residues within 4Å:- Chain A: L.258, F.260, Y.262, A.263
- Chain D: F.17, V.18, F.28, R.118
- Chain E: T.4, T.5, E.7, P.9, F.10, S.11
- Chain F: R.18, A.21, L.25
- Ligands: CLA.7, PL9.19
13 PLIP interactions:7 interactions with chain E, 2 interactions with chain F, 2 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: E:T.5, E:T.5, E:E.7, E:E.7, E:E.7, E:F.10, E:S.11
- Hydrophobic interactions: F:A.21, F:L.25, A:F.260, A:A.263, D:V.18, D:F.28
LHG.110: 28 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.3, W.4, Y.5
- Chain D: W.256, F.260, F.263
- Chain K: E.11, L.12, N.13, S.16, L.19, G.20, L.22, L.23, V.26
- Chain L: V.17, P.18, F.21, L.22
- Ligands: CLA.6, CLA.32, CLA.35, LMG.42, PL9.87, LHG.89, LHG.90
18 PLIP interactions:3 interactions with chain L, 6 interactions with chain K, 3 interactions with chain A, 2 interactions with chain B, 4 interactions with chain D- Hydrophobic interactions: L:V.17, L:P.18, L:L.22, K:L.19, K:V.26, B:W.4, D:F.260, D:F.263, D:F.263, D:F.263
- Hydrogen bonds: K:E.11, K:E.11, K:N.13, K:S.16, A:S.232, A:S.232, A:N.234, B:W.4
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.97: 19 residues within 4Å:- Chain E: F.10, I.13, R.18, Y.19, I.22, H.23, T.26, I.27, L.30
- Chain F: I.14, R.18, W.19, V.22, H.23, A.26, V.27, I.30
- Chain T: A.18, I.22
22 PLIP interactions:9 interactions with chain E, 11 interactions with chain F, 2 interactions with chain T,- Hydrophobic interactions: E:F.10, E:I.13, E:T.26, E:I.27, E:I.27, E:L.30, F:I.14, F:W.19, F:V.22, F:A.26, F:V.27, T:A.18, T:I.22
- Salt bridges: E:R.18, F:R.18
- pi-Stacking: E:Y.19, F:W.19, F:W.19
- Metal complexes: E:H.23, F:H.23
- Water bridges: F:R.18
- pi-Cation interactions: F:H.23
- 1 x MG: MAGNESIUM ION(Non-covalent)
MG.106: 5 residues within 4Å:- Chain I: G.30, A.33, G.34, L.35
- Ligands: LMG.104
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.30, I:A.33, I:L.35, H2O.34
- 1 x HEC: HEME C(Covalent)
HEC.121: 25 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, I.115, I.119
- Ligands: GOL.82
17 PLIP interactions:17 interactions with chain P,- Hydrophobic interactions: P:A.36, P:T.46, P:N.49, P:L.52, P:L.54, P:L.72, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Suga, M. et al., Native structure of photosystem II at 1.95 angstrom resolution viewed by femtosecond X-ray pulses. Nature (2015)
- Release Date
- 2014-12-03
- Peptides
- Photosystem Q(B) protein: A
Photosystem II CP47 chlorophyll apoprotein: B
Photosystem II 44 kDa reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center protein Ycf12: Q
Photosystem II reaction center protein X: R
Photosystem II reaction center protein Z: S
Photosystem II protein Y: T - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
HH
II
JJ
KK
LL
MM
ON
TO
UP
VQ
YR
XS
ZT
R - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 4ub6.1 (1 other biounit)
Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser
Photosystem Q(B) protein
Photosystem II CP47 chlorophyll apoprotein
Photosystem II 44 kDa reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I
Photosystem II reaction center protein J
Photosystem II reaction center protein K
Photosystem II reaction center protein L
Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Photosystem II reaction center protein T
Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Photosystem II reaction center protein Ycf12
Photosystem II reaction center protein X
Photosystem II reaction center protein Z
Photosystem II protein Y
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