- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-1-mer
- Ligands
- 2 x OEY: CA-MN4-O6 CLUSTER(Covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.2: 5 residues within 4Å:- Chain A: H.215, H.272
- Chain D: H.204, H.258
- Ligands: BCT.76
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.215, A:H.272, D:H.204, D:H.258
FE2.116: 5 residues within 4Å:- Chain S: H.215, H.272
- Chain V: H.204, H.258
- Ligands: BCT.191
4 PLIP interactions:2 interactions with chain V, 2 interactions with chain S- Metal complexes: V:H.204, V:H.258, S:H.215, S:H.272
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: N.181, H.332, E.333
- Chain D: K.307
Ligand excluded by PLIPCL.4: 5 residues within 4Å:- Chain A: H.337, N.338, F.339
- Chain C: G.335, E.336
Ligand excluded by PLIPCL.117: 4 residues within 4Å:- Chain S: N.181, H.332, E.333
- Chain V: K.307
Ligand excluded by PLIPCL.118: 5 residues within 4Å:- Chain S: H.337, N.338, F.339
- Chain U: G.335, E.336
Ligand excluded by PLIP- 70 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.5: 28 residues within 4Å:- Chain A: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, A.286, A.287, I.290
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.6, CLA.7, PHO.8, CLA.77, LHG.81
17 PLIP interactions:13 interactions with chain A, 3 interactions with chain D, 1 interactions with chain N,- Hydrophobic interactions: A:F.119, A:F.182, A:F.186, A:Q.187, A:I.192, A:I.192, A:L.193, A:V.205, A:F.206, A:F.206, A:I.290, D:L.172, D:L.172, D:L.195, N:F.17
- Water bridges: A:I.290
- Metal complexes: A:H.198
CLA.6: 21 residues within 4Å:- Chain A: T.45, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183
- Chain D: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.5, PHO.8, SQD.13, CLA.77, PL9.80, LHG.81, LHG.99
7 PLIP interactions:5 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:T.45, A:V.157, A:F.158, A:F.180, A:F.182, D:V.191
- Metal complexes: H2O.4
CLA.7: 21 residues within 4Å:- Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, F.260, W.278
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.5, PL9.15, PHO.17, DGD.70, CLA.77, LMG.86, LHG.88
13 PLIP interactions:6 interactions with chain D, 6 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: D:F.147, D:F.147, D:I.168, D:F.171, D:L.172, D:L.172, A:V.202, A:F.206, A:L.210, A:F.260, A:W.278
- pi-Stacking: A:F.206
- Metal complexes: H2O.5
CLA.9: 25 residues within 4Å:- Chain A: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.20
- Ligands: BCR.10, LMG.52, CLA.57, CLA.58, DGD.68
20 PLIP interactions:7 interactions with chain H, 13 interactions with chain A,- Hydrophobic interactions: H:V.8, H:V.11, H:V.12, H:V.12, H:F.15, H:F.15, H:V.20, A:I.36, A:P.39, A:P.39, A:T.40, A:F.93, A:P.95, A:I.96, A:W.97, A:W.97, A:F.117
- Hydrogen bonds: A:I.96
- Salt bridges: A:H.118
- Metal complexes: A:H.118
CLA.22: 9 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, I.43, L.54
- Ligands: CLA.23, BCR.92
9 PLIP interactions:4 interactions with chain B, 4 interactions with chain G, 1 Ligand-Water interactions,- Hydrophobic interactions: B:W.184, B:P.186, B:F.189, B:F.189, G:F.40, G:F.40, G:I.43, G:L.54
- Metal complexes: H2O.8
CLA.23: 25 residues within 4Å:- Chain B: G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.246, F.249, V.250
- Chain D: L.148, I.149, L.152
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.22, CLA.24, CLA.26, BCR.92, DGD.93
21 PLIP interactions:6 interactions with chain G, 3 interactions with chain D, 12 interactions with chain B,- Hydrophobic interactions: G:F.37, G:F.40, G:I.44, G:I.44, G:L.45, D:L.148, D:I.149, D:L.152, B:F.189, B:F.189, B:F.189, B:A.199, B:H.200, B:A.204, B:V.207, B:V.207, B:F.246, B:F.249, B:F.249
- pi-Stacking: G:F.40
- Metal complexes: B:H.200
CLA.24: 22 residues within 4Å:- Chain B: R.67, L.68, A.145, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.250, V.251, T.261
- Chain G: L.41
- Ligands: CLA.23, CLA.25, CLA.26, CLA.27, CLA.29, CLA.30, CLA.31
12 PLIP interactions:1 interactions with chain G, 11 interactions with chain B,- Hydrophobic interactions: G:L.41, B:F.152, B:F.152, B:F.152, B:F.246, B:A.247, B:V.250, B:V.251
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.25: 25 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.144, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.24, CLA.26, CLA.28, CLA.32, CLA.33, CLA.34, CLA.36, CLA.37, UNL.46
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:F.64, B:L.144, B:L.147, B:L.148, B:V.244, B:A.247, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.26: 26 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, C.149, A.204
- Ligands: CLA.23, CLA.24, CLA.25, CLA.27, CLA.30, CLA.31, CLA.33, CLA.36, UNL.46
11 PLIP interactions:11 interactions with chain B,- Hydrophobic interactions: B:T.26, B:V.29, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.27: 25 residues within 4Å:- Chain B: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.24, CLA.26, CLA.37, BCR.40, UNL.46, SQD.127, UNL.130
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:L.68, B:V.70, B:W.90, B:A.98, B:V.101, B:L.105, B:L.105, B:L.148, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.28: 26 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain D: M.271
- Chain K: F.31
- Chain L: F.14
- Ligands: LHG.20, CLA.25, CLA.34, BCR.38, BCR.39, LMG.101, BCR.221
13 PLIP interactions:10 interactions with chain B, 1 interactions with chain K, 1 interactions with chain L, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Y.39, B:F.60, B:F.60, B:F.60, B:F.324, B:W.449, B:W.449, K:F.31, L:F.14
- Hydrogen bonds: B:Y.39, B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.11
CLA.29: 25 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, T.472, L.473
- Chain D: F.110, I.113, M.116, L.117, F.120, I.140
- Chain G: L.38
- Ligands: CLA.24, CLA.30, CLA.31, CLA.78, UNL.84, DGD.93
18 PLIP interactions:9 interactions with chain D, 8 interactions with chain B, 1 interactions with chain G,- Hydrophobic interactions: D:F.110, D:F.110, D:F.110, D:I.113, D:I.113, D:M.116, D:L.117, D:L.117, D:I.140, B:A.242, B:F.245, B:F.246, B:F.462, B:F.462, B:L.473, G:L.38
- Water bridges: B:S.239
- Metal complexes: B:H.465
CLA.30: 24 residues within 4Å:- Chain B: F.138, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain D: F.110
- Chain G: T.26, T.27, M.30, F.33, L.41, L.42
- Ligands: CLA.24, CLA.26, CLA.29, CLA.31, UNL.84, BCR.92
15 PLIP interactions:5 interactions with chain G, 9 interactions with chain B, 1 interactions with chain D,- Hydrophobic interactions: G:M.30, G:F.33, G:L.41, G:L.42, B:F.138, B:F.138, B:V.207, B:A.211, B:F.214, B:L.224, B:L.228, D:F.110
- Hydrogen bonds: G:T.26
- Salt bridges: B:H.215
- Metal complexes: B:H.215
CLA.31: 20 residues within 4Å:- Chain B: L.134, M.137, F.138, H.141, L.142, A.145, L.228, M.230, I.233, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.24, CLA.26, CLA.29, CLA.30, CLA.33, CLA.36
9 PLIP interactions:8 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:L.228, B:M.230, B:I.233, B:T.235, B:A.243
- Metal complexes: H2O.6
CLA.32: 23 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471, F.478
- Ligands: LHG.20, CLA.25, CLA.33, CLA.34, CLA.35, LHG.99
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:W.4, B:L.237, B:L.237, B:I.241, B:F.457, B:F.461, B:F.463
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.33: 20 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, A.21, H.22, H.25, T.26, I.233, V.236, L.237, S.240, V.244
- Ligands: CLA.25, CLA.26, CLA.31, CLA.32, CLA.34, CLA.35, CLA.36
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:L.11, B:I.12, B:L.18, B:H.22, B:H.25, B:I.233, B:V.236, B:L.237, B:L.237, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- pi-Stacking: B:H.25
- Metal complexes: B:H.22
CLA.34: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Chain L: F.14
- Ligands: LHG.20, CLA.25, CLA.28, CLA.32, CLA.33, CLA.35, BCR.38, BCR.39
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain L,- Hydrophobic interactions: B:V.29, B:W.32, B:W.32, B:F.461, B:F.461, L:F.14
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.35: 24 residues within 4Å:- Chain 5: F.8
- Chain B: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.8, V.10
- Chain L: F.21, L.25
- Ligands: CLA.32, CLA.33, CLA.34, BCR.38, SQD.41, LHG.99, LMG.101, UNL.215, LMT.216, BCR.221
9 PLIP interactions:1 interactions with chain 5, 6 interactions with chain B, 2 interactions with chain L,- Hydrophobic interactions: 5:F.8, B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:F.21, L:L.25
- Metal complexes: B:H.8
CLA.36: 18 residues within 4Å:- Chain B: I.19, H.22, L.23, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.10, L.13, N.14
- Ligands: CLA.25, CLA.26, CLA.31, CLA.33, CLA.37, BCR.40
10 PLIP interactions:5 interactions with chain G, 5 interactions with chain B,- Hydrophobic interactions: G:L.6, G:L.10, G:L.10, G:L.13, G:L.13, B:I.19, B:L.132, B:L.144
- Hydrogen bonds: B:H.22
- Metal complexes: B:H.141
CLA.37: 16 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119, L.121
- Chain G: T.4, W.5, L.6, G.7
- Ligands: CLA.25, CLA.27, CLA.36, BCR.40, UNL.46
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.23, B:W.112, B:W.112, B:L.119, B:L.121, G:L.6
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
- Hydrogen bonds: G:T.4
- Water bridges: G:L.6
CLA.53: 21 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.54, CLA.55, CLA.58, CLA.59, BCR.67
9 PLIP interactions:9 interactions with chain C,- Hydrophobic interactions: C:I.206, C:I.222, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278
- Metal complexes: C:H.219
CLA.54: 22 residues within 4Å:- Chain C: W.45, I.69, L.70, H.73, W.79, L.156, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.53, CLA.55, CLA.56, CLA.62, CLA.64
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:W.45, C:I.69, C:L.70, C:W.79, C:L.156, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.55: 18 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100
- Ligands: CLA.53, CLA.54, CLA.59, CLA.61, CLA.62, CLA.64, CLA.65, LMG.72
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:V.96
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.56: 19 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.54, CLA.60, CLA.62, DGD.69, DGD.70, LMG.71, LHG.82
10 PLIP interactions:8 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:W.45, C:F.52, C:I.69, C:W.407, C:W.407, C:W.407, C:F.418, C:F.418, J:V.21
- Metal complexes: H2O.18
CLA.57: 21 residues within 4Å:- Chain A: F.33, L.121, M.127, G.128, W.131
- Chain C: F.246, S.255, Y.256, G.259, A.260, H.423, L.424, A.427, R.431
- Chain H: V.16, F.19, F.23
- Ligands: CLA.9, LMG.52, CLA.59, BCR.67
16 PLIP interactions:3 interactions with chain H, 8 interactions with chain C, 5 interactions with chain A,- Hydrophobic interactions: H:V.16, H:F.19, H:F.23, C:F.246, C:Y.256, C:Y.256, C:L.424, A:L.121, A:W.131, A:W.131, A:W.131
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
- pi-Stacking: A:W.131
CLA.58: 21 residues within 4Å:- Chain C: L.143, L.147, L.195, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.9, LMT.21, LMG.52, CLA.53, CLA.59, BCR.67, DGD.68
9 PLIP interactions:9 interactions with chain C,- Hydrophobic interactions: C:L.143, C:L.143, C:L.147, C:L.147, C:W.232, C:W.241
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.59: 20 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.53, CLA.55, CLA.57, CLA.58, CLA.61, BCR.67
14 PLIP interactions:13 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.150, C:F.246, C:F.246, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:L.261
- Hydrogen bonds: C:H.146
- Metal complexes: H2O.14
CLA.60: 23 residues within 4Å:- Chain C: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Ligands: SQD.11, CLA.56, CLA.61, CLA.62, CLA.63, DGD.69, LMG.71, LHG.82
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:L.254, C:L.258, C:F.419, C:W.425
- Hydrogen bonds: C:N.21, C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.61: 22 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, L.150, G.250, E.251, Y.253, L.254, S.257, L.258
- Ligands: CLA.55, CLA.59, CLA.60, CLA.62, CLA.63, CLA.64
13 PLIP interactions:13 interactions with chain C,- Hydrophobic interactions: C:L.24, C:L.31, C:A.34, C:H.38, C:Y.131, C:W.133, C:W.133, C:W.133, C:L.150, C:Y.253
- Hydrogen bonds: C:S.257
- pi-Stacking: C:H.35
- Metal complexes: C:H.35
CLA.62: 17 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, L.24
- Ligands: CLA.54, CLA.55, CLA.56, CLA.60, CLA.61, CLA.63, LHG.82
9 PLIP interactions:2 interactions with chain J, 7 interactions with chain C,- Hydrophobic interactions: J:P.20, J:L.24, C:L.41, C:W.45, C:L.261, C:F.418, C:F.419
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.63: 30 residues within 4Å:- Chain C: T.6, N.7, R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, A.105, G.108, F.109
- Chain J: F.23, L.24, A.27, W.30, Q.31
- Chain R: I.20, L.23, N.29, L.30
- Ligands: CLA.60, CLA.61, CLA.62, BCR.98
- Chain a: V.20, V.23, A.28
17 PLIP interactions:6 interactions with chain C, 7 interactions with chain J, 2 interactions with chain a, 2 interactions with chain R,- Hydrophobic interactions: C:W.17, C:L.24, C:L.24, C:F.109, J:F.23, J:L.24, J:A.27, J:W.30, J:Q.31, a:V.23, a:A.28, R:I.20, R:L.30
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
- pi-Stacking: J:W.30, J:W.30
CLA.64: 17 residues within 4Å:- Chain C: H.35, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, G.153
- Ligands: CLA.54, CLA.55, CLA.61, CLA.65, BCR.66
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:H.35, C:F.128, C:F.129, C:Y.131, C:I.142, C:F.145, C:F.145, C:I.148, C:V.149
- Metal complexes: C:H.146
CLA.65: 16 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.55, CLA.64, BCR.66, LMG.72, LMG.226
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.106, C:L.107, C:L.122, C:Y.125, C:F.129, C:F.129
- Hydrogen bonds: C:Y.113
- Salt bridges: C:H.114
- pi-Stacking: C:Y.113, C:F.129
- Metal complexes: C:H.114
CLA.77: 28 residues within 4Å:- Chain A: M.183, F.206
- Chain D: W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, S.272, A.273, V.276
- Ligands: CLA.5, CLA.6, CLA.7, PL9.15, PHO.17
14 PLIP interactions:13 interactions with chain D, 1 interactions with chain A,- Hydrophobic interactions: D:W.38, D:L.112, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:V.191, D:V.194, D:V.194, D:L.195, A:F.206
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.78: 25 residues within 4Å:- Chain D: L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Chain G: L.38, L.42
- Chain Q: F.10, G.12, G.16, A.17, V.19
- Ligands: PL9.15, CLA.29, SQD.112, UNL.113
15 PLIP interactions:12 interactions with chain D, 1 interactions with chain Q, 2 interactions with chain G,- Hydrophobic interactions: D:L.26, D:P.29, D:L.33, D:L.81, D:L.82, D:W.83, D:W.83, D:L.106, Q:V.19, G:L.38, G:L.42
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
CLA.119: 27 residues within 4Å:- Chain 5: F.17
- Chain S: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, F.206, A.286, A.287, I.290
- Chain V: L.172, L.195
- Ligands: CLA.120, CLA.121, PHO.122, CLA.193, LHG.197
14 PLIP interactions:11 interactions with chain S, 2 interactions with chain V, 1 interactions with chain 5,- Hydrophobic interactions: S:F.119, S:P.150, S:F.182, S:F.186, S:Q.187, S:I.192, S:I.192, S:L.193, S:F.206, V:L.172, V:L.195, 5:F.17
- Water bridges: S:I.290
- Metal complexes: S:H.198
CLA.120: 21 residues within 4Å:- Chain S: T.45, F.48, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183
- Chain V: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.119, PHO.122, SQD.127, LHG.162, CLA.193, PL9.196
8 PLIP interactions:6 interactions with chain S, 1 interactions with chain V, 1 Ligand-Water interactions,- Hydrophobic interactions: S:T.45, S:F.48, S:V.157, S:F.158, S:F.180, S:F.182, V:V.191
- Metal complexes: H2O.39
CLA.121: 19 residues within 4Å:- Chain S: Q.199, V.202, A.203, F.206, G.207, L.210, W.278
- Chain V: F.147, V.165, I.168, F.169, L.172
- Ligands: CLA.119, PL9.129, LHG.134, DGD.182, PHO.192, CLA.193, LMG.202
11 PLIP interactions:4 interactions with chain S, 6 interactions with chain V, 1 Ligand-Water interactions,- Hydrophobic interactions: S:V.202, S:L.210, S:W.278, V:F.147, V:F.147, V:I.168, V:F.169, V:L.172, V:L.172
- pi-Stacking: S:F.206
- Metal complexes: H2O.41
CLA.123: 25 residues within 4Å:- Chain S: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Chain Z: V.8, Y.9, V.11, V.12, T.13, F.15, V.16
- Ligands: BCR.124, LMG.131, CLA.169, CLA.170, DGD.180
19 PLIP interactions:5 interactions with chain Z, 14 interactions with chain S,- Hydrophobic interactions: Z:V.8, Z:V.11, Z:V.12, Z:F.15, Z:V.16, S:I.36, S:P.39, S:T.40, S:F.93, S:P.95, S:I.96, S:W.97, S:W.97, S:L.114, S:F.117, S:L.121
- Hydrogen bonds: S:I.96
- Salt bridges: S:H.118
- Metal complexes: S:H.118
CLA.135: 9 residues within 4Å:- Chain T: W.184, G.185, P.186, F.189
- Chain Y: F.40, L.54
- Ligands: CLA.136, HTG.156, BCR.209
8 PLIP interactions:4 interactions with chain T, 3 interactions with chain Y, 1 Ligand-Water interactions,- Hydrophobic interactions: T:W.184, T:P.186, T:F.189, T:F.189, Y:F.40, Y:F.40, Y:L.54
- Metal complexes: H2O.42
CLA.136: 27 residues within 4Å:- Chain T: E.183, G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain V: V.144, I.149, L.152
- Chain Y: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.135, CLA.137, CLA.139, CLA.143, BCR.209
21 PLIP interactions:14 interactions with chain T, 4 interactions with chain Y, 3 interactions with chain V,- Hydrophobic interactions: T:F.189, T:F.189, T:A.199, T:H.200, T:A.204, T:V.207, T:V.207, T:F.245, T:F.246, T:F.246, T:F.246, T:F.249, T:F.249, Y:F.37, Y:F.40, Y:I.44, V:V.144, V:I.149, V:L.152
- Metal complexes: T:H.200
- pi-Stacking: Y:F.40
CLA.137: 25 residues within 4Å:- Chain T: R.67, L.68, A.145, L.148, C.149, F.152, L.157, M.165, V.197, H.200, H.201, F.246, A.247, V.251, T.261
- Chain Y: M.34, F.37, L.41
- Ligands: CLA.136, CLA.138, CLA.139, CLA.140, CLA.142, CLA.144, BCR.209
13 PLIP interactions:11 interactions with chain T, 2 interactions with chain Y,- Hydrophobic interactions: T:L.148, T:F.152, T:F.152, T:F.152, T:F.246, T:F.246, T:A.247, Y:F.37, Y:L.41
- Hydrogen bonds: T:R.67
- Salt bridges: T:R.67
- pi-Cation interactions: T:H.200
- Metal complexes: T:H.201
CLA.138: 22 residues within 4Å:- Chain T: W.32, F.60, F.64, R.67, L.144, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, F.461
- Ligands: CLA.137, CLA.139, CLA.140, CLA.141, CLA.146, CLA.147, CLA.149, UNL.159
14 PLIP interactions:14 interactions with chain T,- Hydrophobic interactions: T:W.32, T:F.60, T:F.64, T:F.64, T:L.148, T:V.244, T:A.247, T:V.251, T:F.457, T:F.457, T:F.461, T:F.461
- Salt bridges: T:R.67
- Metal complexes: T:H.454
CLA.139: 27 residues within 4Å:- Chain T: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, G.146, A.204, G.208
- Ligands: CLA.136, CLA.137, CLA.138, CLA.140, CLA.143, CLA.144, CLA.146, CLA.149
10 PLIP interactions:10 interactions with chain T,- Hydrophobic interactions: T:T.26, T:W.32, T:A.33, T:L.68, T:V.95, T:L.102, T:A.145
- Water bridges: T:R.67
- Salt bridges: T:R.67
- Metal complexes: T:H.99
CLA.140: 25 residues within 4Å:- Chain T: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: SQD.13, UNL.16, CLA.137, CLA.138, CLA.139, CLA.150, BCR.153, UNL.159
11 PLIP interactions:11 interactions with chain T,- Hydrophobic interactions: T:L.68, T:W.90, T:W.90, T:W.90, T:V.101, T:L.105, T:L.148, T:F.155, T:F.161, T:F.161
- Metal complexes: T:H.156
CLA.141: 27 residues within 4Å:- Chain 2: F.31
- Chain 3: F.14
- Chain T: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain V: M.271
- Ligands: BCR.108, CLA.138, CLA.147, BCR.151, BCR.152, LMG.163, PL9.196, LHG.204
11 PLIP interactions:8 interactions with chain T, 1 interactions with chain 2, 1 interactions with chain 3, 1 Ligand-Water interactions,- Hydrophobic interactions: T:W.32, T:Y.39, T:F.60, T:F.324, T:W.449, T:W.449, 2:F.31, 3:F.14
- Hydrogen bonds: T:G.327
- pi-Stacking: T:F.60
- Metal complexes: H2O.48
CLA.142: 27 residues within 4Å:- Chain T: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain V: L.79, F.110, I.113, M.116, L.117, I.140
- Chain Y: L.42
- Ligands: CLA.137, CLA.143, CLA.144, CLA.194, UNL.199, UNL.200, DGD.210
20 PLIP interactions:11 interactions with chain T, 8 interactions with chain V, 1 interactions with chain Y,- Hydrophobic interactions: T:A.242, T:F.245, T:F.245, T:F.246, T:F.462, T:F.462, T:I.466, T:L.473, V:L.79, V:F.110, V:I.113, V:I.113, V:M.116, V:L.117, V:L.117, V:I.140, Y:L.42
- Hydrogen bonds: T:S.238
- Water bridges: T:S.239
- Metal complexes: T:H.465
CLA.143: 23 residues within 4Å:- Chain T: F.138, L.142, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain Y: T.26, T.27, M.30, F.33, L.41
- Ligands: CLA.136, CLA.139, CLA.142, CLA.144, UNL.200, BCR.209
14 PLIP interactions:11 interactions with chain T, 3 interactions with chain Y,- Hydrophobic interactions: T:F.138, T:F.138, T:L.142, T:V.207, T:A.211, T:F.214, T:F.214, T:L.224, T:L.228, Y:M.30, Y:F.33, Y:L.41
- Salt bridges: T:H.215
- Metal complexes: T:H.215
CLA.144: 19 residues within 4Å:- Chain T: H.22, L.134, M.137, F.138, H.141, L.142, A.145, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.137, CLA.139, CLA.142, CLA.143, CLA.146, CLA.149
8 PLIP interactions:7 interactions with chain T, 1 Ligand-Water interactions,- Hydrophobic interactions: T:L.134, T:M.137, T:F.138, T:F.138, T:M.230, T:T.235
- Hydrogen bonds: T:H.141
- Metal complexes: H2O.46
CLA.145: 19 residues within 4Å:- Chain T: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Ligands: CLA.146, CLA.147, CLA.148, LHG.204
13 PLIP interactions:13 interactions with chain T,- Hydrophobic interactions: T:W.4, T:H.8, T:T.9, T:L.237, T:L.237, T:I.241, T:F.461, T:F.463
- Hydrogen bonds: T:H.8
- Salt bridges: T:H.8, T:R.471
- pi-Stacking: T:W.467
- Metal complexes: T:H.468
CLA.146: 19 residues within 4Å:- Chain T: H.8, L.11, I.12, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, V.244
- Ligands: CLA.138, CLA.139, CLA.144, CLA.145, CLA.147, CLA.148, CLA.149
14 PLIP interactions:14 interactions with chain T,- Hydrophobic interactions: T:L.11, T:I.12, T:L.18, T:H.22, T:H.25, T:T.26, T:I.233, T:V.236, T:L.237, T:V.244
- Hydrogen bonds: T:S.240
- Salt bridges: T:H.22
- pi-Stacking: T:H.25
- Metal complexes: T:H.22
CLA.147: 14 residues within 4Å:- Chain T: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.138, CLA.141, CLA.145, CLA.146, CLA.148, BCR.151, BCR.152, LMG.163, LHG.204
8 PLIP interactions:8 interactions with chain T,- Hydrophobic interactions: T:V.29, T:V.29, T:W.32, T:W.32, T:F.461, T:F.461
- Salt bridges: T:H.8
- Metal complexes: T:H.25
CLA.148: 23 residues within 4Å:- Chain 2: Q.8, V.10
- Chain 3: F.21, L.25
- Chain N: F.8
- Chain T: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Ligands: SQD.100, LMT.102, UNL.103, CLA.145, CLA.146, CLA.147, BCR.151, LHG.162, LMG.163
9 PLIP interactions:6 interactions with chain T, 1 interactions with chain N, 2 interactions with chain 3,- Hydrophobic interactions: T:V.7, T:L.11, T:M.24, T:L.28, T:W.114, N:F.8, 3:F.21, 3:L.25
- Metal complexes: T:H.8
CLA.149: 18 residues within 4Å:- Chain T: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain Y: L.10, L.13, N.14
- Ligands: CLA.138, CLA.139, CLA.144, CLA.146, CLA.150, BCR.153
10 PLIP interactions:4 interactions with chain Y, 6 interactions with chain T,- Hydrophobic interactions: Y:L.10, Y:L.10, Y:L.13, Y:L.13, T:I.19, T:L.132, T:I.140, T:L.144
- Hydrogen bonds: T:H.22
- Metal complexes: T:H.141
CLA.150: 13 residues within 4Å:- Chain T: I.19, L.23, A.109, W.112, H.113, L.119
- Chain Y: T.4, L.6, G.7, L.10
- Ligands: CLA.140, CLA.149, BCR.153
12 PLIP interactions:8 interactions with chain T, 4 interactions with chain Y,- Hydrophobic interactions: T:I.19, T:L.23, T:W.112, T:W.112, T:L.119, Y:L.6, Y:L.10
- pi-Stacking: T:W.112, T:W.112
- Metal complexes: T:H.113
- Hydrogen bonds: Y:T.4
- Water bridges: Y:W.5
CLA.165: 20 residues within 4Å:- Chain U: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, F.271, V.278, Y.279
- Ligands: CLA.166, CLA.167, CLA.170, CLA.171, BCR.179
12 PLIP interactions:12 interactions with chain U,- Hydrophobic interactions: U:L.150, U:A.154, U:L.157, U:I.206, U:I.222, U:I.222, U:A.260, U:M.264, U:F.271, U:V.278
- Hydrogen bonds: U:Y.279
- Metal complexes: U:H.219
CLA.166: 20 residues within 4Å:- Chain U: W.45, I.69, H.73, L.77, L.156, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, F.419
- Ligands: CLA.165, CLA.167, CLA.168, CLA.174, CLA.176, HTG.185
12 PLIP interactions:12 interactions with chain U,- Hydrophobic interactions: U:W.45, U:I.69, U:L.77, U:L.261, U:M.264, U:A.268, U:L.408, U:F.419
- Hydrogen bonds: U:Y.279
- Salt bridges: U:H.73, U:H.412
- Metal complexes: U:H.412
CLA.167: 18 residues within 4Å:- Chain U: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100
- Ligands: CLA.165, CLA.166, CLA.171, CLA.173, CLA.174, CLA.176, CLA.177, LMG.184
6 PLIP interactions:6 interactions with chain U,- Hydrophobic interactions: U:V.43, U:A.46, U:L.77, U:V.96
- Salt bridges: U:H.73
- Metal complexes: U:H.100
CLA.168: 20 residues within 4Å:- Chain 1: P.17, V.21
- Chain U: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, F.418
- Ligands: CLA.166, CLA.172, CLA.174, DGD.181, DGD.182, LMG.183, LHG.198
11 PLIP interactions:9 interactions with chain U, 1 interactions with chain 1, 1 Ligand-Water interactions,- Hydrophobic interactions: U:W.45, U:F.52, U:I.69, U:W.407, U:W.407, U:W.407, U:L.408, U:F.418, U:F.418, 1:V.21
- Metal complexes: H2O.54
CLA.169: 26 residues within 4Å:- Chain S: F.33, L.121, S.124, C.125, M.127, G.128, W.131
- Chain U: F.246, S.255, Y.256, G.259, A.260, M.263, L.420, H.423, L.424, A.427, R.431
- Chain Z: V.16, F.19, F.23
- Ligands: CLA.123, LMG.131, CLA.171, BCR.179, DGD.180
18 PLIP interactions:9 interactions with chain U, 5 interactions with chain S, 4 interactions with chain Z,- Hydrophobic interactions: U:F.246, U:Y.256, U:Y.256, U:L.420, S:L.121, S:W.131, S:W.131, S:W.131, Z:V.16, Z:F.19, Z:F.19, Z:F.23
- Hydrogen bonds: U:Y.256
- Water bridges: U:I.247, U:I.247
- Salt bridges: U:R.431
- Metal complexes: U:H.423
- pi-Stacking: S:W.131
CLA.170: 19 residues within 4Å:- Chain U: L.143, L.147, L.195, L.196, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, F.246
- Ligands: CLA.123, CLA.165, CLA.171, BCR.179, DGD.180
13 PLIP interactions:13 interactions with chain U,- Hydrophobic interactions: U:L.143, U:L.143, U:L.147, U:L.147, U:L.195, U:L.196, U:I.225, U:W.232, U:W.241
- Hydrogen bonds: U:F.239
- Salt bridges: U:H.233
- pi-Stacking: U:W.232
- Metal complexes: U:H.233
CLA.171: 20 residues within 4Å:- Chain U: M.139, T.140, L.143, H.146, L.147, L.150, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.165, CLA.167, CLA.169, CLA.170, CLA.173, BCR.179
15 PLIP interactions:14 interactions with chain U, 1 Ligand-Water interactions,- Hydrophobic interactions: U:M.139, U:T.140, U:L.143, U:L.143, U:L.150, U:F.246, U:F.246, U:F.246, U:W.248, U:Y.253, U:Y.253, U:Y.256, U:Y.256, U:L.261
- Metal complexes: H2O.50
CLA.172: 24 residues within 4Å:- Chain U: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Ligands: SQD.125, CLA.168, CLA.173, CLA.174, CLA.175, DGD.181, DGD.182, LMG.183, LHG.198
12 PLIP interactions:12 interactions with chain U,- Hydrophobic interactions: U:A.22, U:L.254, U:L.254, U:L.258, U:F.419, U:W.425
- Hydrogen bonds: U:N.21, U:N.21
- Salt bridges: U:H.426, U:R.429
- pi-Stacking: U:W.425
- Metal complexes: U:H.426
CLA.173: 24 residues within 4Å:- Chain U: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, I.142, H.146, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.167, CLA.171, CLA.172, CLA.174, CLA.175, CLA.176
12 PLIP interactions:12 interactions with chain U,- Hydrophobic interactions: U:N.21, U:L.24, U:I.25, U:L.31, U:A.34, U:H.38, U:W.133, U:W.133, U:I.142, U:Y.253
- Hydrogen bonds: U:S.257
- Metal complexes: U:H.35
CLA.174: 18 residues within 4Å:- Chain 1: P.20, V.21, L.24
- Chain U: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Ligands: CLA.166, CLA.167, CLA.168, CLA.172, CLA.173, CLA.175, LHG.198
9 PLIP interactions:7 interactions with chain U, 2 interactions with chain 1,- Hydrophobic interactions: U:L.41, U:W.45, U:L.261, U:F.418, U:F.419, 1:P.20, 1:V.21
- Hydrogen bonds: U:N.21
- Metal complexes: U:H.38
CLA.175: 32 residues within 4Å:- Chain 1: F.23, L.24, A.27, W.30, Q.31
- Chain 9: I.20, L.23, N.29, L.30
- Chain U: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, H.38, L.41, A.105, G.108, F.109, I.116
- Ligands: CLA.172, CLA.173, CLA.174, BCR.213, LMG.227
- Chain c: M.19, V.20, A.28
16 PLIP interactions:2 interactions with chain 9, 4 interactions with chain U, 8 interactions with chain 1, 2 interactions with chain c,- Hydrophobic interactions: 9:I.20, 9:L.30, U:K.30, U:L.41, 1:F.23, 1:F.23, 1:L.24, 1:A.27, 1:W.30, 1:Q.31, c:V.20, c:A.28
- Hydrogen bonds: U:R.23
- Salt bridges: U:R.8
- pi-Stacking: 1:W.30, 1:W.30
CLA.176: 20 residues within 4Å:- Chain U: L.32, H.35, V.36, A.39, L.107, F.128, F.129, I.142, F.145, H.146, I.148, V.149, I.152, G.153, L.156
- Ligands: CLA.166, CLA.167, CLA.173, CLA.177, BCR.178
11 PLIP interactions:11 interactions with chain U,- Hydrophobic interactions: U:L.32, U:H.35, U:F.128, U:F.128, U:I.142, U:F.145, U:F.145, U:V.149, U:I.152, U:L.156
- Metal complexes: U:H.146
CLA.177: 16 residues within 4Å:- Chain U: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.167, CLA.176, BCR.178, LMG.184, LMG.227
13 PLIP interactions:13 interactions with chain U,- Hydrophobic interactions: U:L.32, U:V.106, U:L.107, U:Y.113, U:L.122, U:Y.125, U:F.129, U:F.129, U:F.129
- Hydrogen bonds: U:Y.113
- Salt bridges: U:H.114
- pi-Stacking: U:F.129
- Metal complexes: U:H.114
CLA.193: 27 residues within 4Å:- Chain S: M.183, F.206
- Chain V: L.112, P.139, V.142, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.119, CLA.120, CLA.121, PL9.129, PHO.192
13 PLIP interactions:13 interactions with chain V,- Hydrophobic interactions: V:L.112, V:V.142, V:F.171, V:F.175, V:Q.176, V:T.182, V:V.191, V:V.194, V:V.194, V:L.195, V:L.269
- pi-Stacking: V:W.181
- Metal complexes: V:H.187
CLA.194: 27 residues within 4Å:- Chain 8: G.12, L.13, G.16, A.17, V.19
- Chain V: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Chain Y: L.36, L.38, L.42
- Ligands: PL9.129, CLA.142, SQD.207, UNL.224
15 PLIP interactions:2 interactions with chain Y, 11 interactions with chain V, 2 interactions with chain 8,- Hydrophobic interactions: Y:L.36, Y:L.38, V:L.26, V:P.29, V:L.33, V:L.82, V:W.83, V:W.83, V:L.106, 8:L.13, 8:V.19
- Hydrogen bonds: V:L.82
- Salt bridges: V:H.107
- pi-Stacking: V:F.103
- Metal complexes: V:H.107
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.8: 25 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, M.172, G.175, P.279, V.283
- Chain D: L.195, A.198, L.199, I.203, W.243, F.247
- Ligands: CLA.5, CLA.6, LHG.81
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:I.115, A:F.119, A:F.119, A:A.146, A:Y.147, A:Y.147, A:P.150, A:F.158, A:V.283, D:L.195
- Hydrogen bonds: A:Y.126, A:Q.130
PHO.17: 29 residues within 4Å:- Chain A: F.206, A.209, L.210, M.214, F.255, L.258, I.259
- Chain D: A.31, A.34, L.35, W.38, I.104, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.7, PL9.15, CLA.77
21 PLIP interactions:19 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.31, D:L.35, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:P.139, D:F.143, D:V.165, D:P.265, D:L.269, A:F.206, A:L.210
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136
PHO.122: 25 residues within 4Å:- Chain S: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, M.172, G.175, V.205, P.279, V.283
- Chain V: L.195, A.198, L.199, I.203, W.243, F.247
- Ligands: CLA.119, CLA.120, LHG.197
15 PLIP interactions:14 interactions with chain S, 1 interactions with chain V- Hydrophobic interactions: S:L.41, S:A.44, S:F.48, S:I.115, S:F.119, S:A.146, S:Y.147, S:Y.147, S:P.150, S:V.205, S:P.279, S:V.283, V:L.195
- Hydrogen bonds: S:Q.130, S:Y.147
PHO.192: 26 residues within 4Å:- Chain S: F.206, A.209, L.210, M.214, L.258, I.259
- Chain V: A.31, L.35, W.38, I.104, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, L.269
- Ligands: CLA.121, PL9.129, CLA.193
20 PLIP interactions:18 interactions with chain V, 2 interactions with chain S- Hydrophobic interactions: V:A.31, V:L.35, V:W.38, V:W.38, V:W.38, V:W.38, V:I.104, V:F.115, V:A.135, V:F.136, V:P.139, V:F.143, V:V.165, V:P.265, V:L.269, S:F.206, S:L.210
- Hydrogen bonds: V:Q.119, V:N.132
- pi-Stacking: V:F.136
- 22 x BCR: BETA-CAROTENE(Non-covalent)
BCR.10: 15 residues within 4Å:- Chain A: F.17, V.35, L.42, A.43, I.46, I.50, A.51, I.96, W.105, L.106
- Chain H: F.15
- Ligands: CLA.9, UNL.16, UNL.94, HTG.158
Ligand excluded by PLIPBCR.38: 13 residues within 4Å:- Chain 5: F.19
- Chain B: M.24, L.28, C.111, W.114
- Chain L: A.10, L.13
- Ligands: CLA.28, CLA.34, CLA.35, BCR.39, LMG.101, BCR.221
Ligand excluded by PLIPBCR.39: 13 residues within 4Å:- Chain B: L.28, G.31, W.32, I.100, V.101, S.103, G.104
- Ligands: CLA.28, CLA.34, BCR.38, LMG.101, SQD.127, BCR.221
Ligand excluded by PLIPBCR.40: 15 residues within 4Å:- Chain 5: F.18, F.23
- Chain B: L.102, L.105, L.106, L.108, A.109, C.111, W.112, V.115
- Ligands: CLA.27, CLA.36, CLA.37, UNL.46, SQD.127
Ligand excluded by PLIPBCR.66: 15 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Chain J: Y.6
- Ligands: CLA.64, CLA.65, LMG.72
- Chain a: V.51, G.55, N.58, F.59
Ligand excluded by PLIPBCR.67: 19 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.53, CLA.57, CLA.58, CLA.59
Ligand excluded by PLIPBCR.79: 15 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91
- Chain F: P.28, T.29, F.32, L.33, I.36
- Chain I: V.20, V.24
- Ligands: LMG.86
Ligand excluded by PLIPBCR.92: 14 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, F.40, I.43, L.54
- Chain Q: T.1, I.2, L.6
- Ligands: CLA.22, CLA.23, CLA.30
Ligand excluded by PLIPBCR.98: 17 residues within 4Å:- Chain C: A.37, G.40, L.41, L.101, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.9, L.16, F.23, W.30
- Ligands: CLA.63, BCR.114
- Chain a: L.9, S.16
Ligand excluded by PLIPBCR.108: 20 residues within 4Å:- Chain A: L.28
- Chain N: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain T: W.32, S.35, M.36, Y.39
- Ligands: SQD.13, SQD.100, CLA.141, BCR.151, BCR.152, LMT.160
Ligand excluded by PLIPBCR.114: 19 residues within 4Å:- Chain C: F.44
- Chain I: T.14, G.17, M.18
- Chain J: L.12, I.19, L.22, A.25, F.28, V.29
- Chain R: I.12, G.13, G.16, P.17
- Ligands: SQD.11, BCR.98
- Chain a: V.13, S.16, F.17
Ligand excluded by PLIPBCR.124: 16 residues within 4Å:- Chain S: V.35, L.42, A.43, C.47, I.50, A.51, A.55, I.96, W.105, L.106, P.111
- Chain Z: F.15
- Ligands: HTG.42, UNL.50, CLA.123, UNL.130
Ligand excluded by PLIPBCR.151: 15 residues within 4Å:- Chain 3: A.10, L.13
- Chain N: F.19
- Chain T: M.24, L.28, C.111, W.114
- Ligands: SQD.100, LMT.104, BCR.108, CLA.141, CLA.147, CLA.148, BCR.152, LMG.163
Ligand excluded by PLIPBCR.152: 13 residues within 4Å:- Chain T: L.28, G.31, W.32, S.35, V.101, S.103, G.104
- Ligands: SQD.13, BCR.108, CLA.141, CLA.147, BCR.151, LMG.163
Ligand excluded by PLIPBCR.153: 12 residues within 4Å:- Chain N: F.18, F.23
- Chain T: L.105, L.108, A.109, W.112, V.115
- Ligands: SQD.13, CLA.140, CLA.149, CLA.150, UNL.159
Ligand excluded by PLIPBCR.178: 14 residues within 4Å:- Chain 1: Y.6
- Chain U: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Ligands: CLA.176, CLA.177, LMG.184
- Chain c: G.55, N.58, F.59
Ligand excluded by PLIPBCR.179: 18 residues within 4Å:- Chain U: I.191, F.192, Y.194, L.195, I.206, D.214, V.215, G.218, H.219, I.222, F.246
- Chain Z: V.20, F.23, L.24
- Ligands: CLA.165, CLA.169, CLA.170, CLA.171
Ligand excluded by PLIPBCR.195: 14 residues within 4Å:- Chain 0: V.20, V.24
- Chain V: Y.32, L.33, G.36, G.37, L.39, T.40, F.91
- Chain X: P.28, T.29, F.32, L.33
- Ligands: LMG.202
Ligand excluded by PLIPBCR.209: 16 residues within 4Å:- Chain 8: T.1, I.2, L.6
- Chain Y: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43, L.54
- Ligands: CLA.135, CLA.136, CLA.137, CLA.143
Ligand excluded by PLIPBCR.213: 16 residues within 4Å:- Chain 1: Y.6, F.9, F.23
- Chain U: A.37, G.40, L.41, L.101, S.104, A.105, G.108, A.115
- Ligands: CLA.175, BCR.225
- Chain c: L.9, V.13, S.16
Ligand excluded by PLIPBCR.221: 20 residues within 4Å:- Chain 5: F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain B: W.32, S.35, M.36, Y.39
- Chain S: L.28
- Ligands: CLA.28, CLA.35, BCR.38, BCR.39, SQD.41, LMT.51, SQD.127
Ligand excluded by PLIPBCR.225: 19 residues within 4Å:- Chain 0: A.13, T.14, G.17, M.18
- Chain 1: L.12, I.19, L.22, F.23, A.25, F.28, V.29
- Chain 9: I.12, G.13, G.16
- Chain U: F.44
- Ligands: UNL.188, BCR.213
- Chain c: S.16, F.17
Ligand excluded by PLIP- 8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.11: 23 residues within 4Å:- Chain A: L.200, A.203, G.204, N.267, S.270, F.273, F.274, A.277, W.278, V.281, G.282
- Chain C: Q.10, A.16, W.18
- Chain D: S.220, F.222, R.223
- Chain J: A.25, F.28
- Ligands: CLA.60, LHG.82, UNL.97, BCR.114
15 PLIP interactions:9 interactions with chain A, 1 interactions with chain J, 3 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: A:A.203, A:F.274, A:A.277, A:W.278, A:V.281, J:F.28, C:W.18
- Hydrogen bonds: A:N.267, A:S.270, C:Q.10, D:S.220
- Water bridges: A:N.266, A:N.267, C:W.17
- Salt bridges: D:R.223
SQD.13: 19 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, I.38, L.42, T.45
- Chain N: F.22
- Chain T: L.108, W.112, Y.116
- Ligands: CLA.6, UNL.16, UNL.94, BCR.108, CLA.140, BCR.152, BCR.153, HTG.158
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain T- Hydrophobic interactions: A:L.28, A:I.38, A:L.42, A:T.45
- Hydrogen bonds: A:N.26, A:R.27, A:L.28, T:Y.116
SQD.41: 15 residues within 4Å:- Chain 2: R.14, Y.18
- Chain 3: Y.26
- Chain 5: C.12, F.23
- Chain B: R.17, L.28, S.103, F.107, W.114
- Chain K: R.7
- Ligands: CLA.35, UNL.215, LMT.216, BCR.221
10 PLIP interactions:1 interactions with chain K, 4 interactions with chain B, 4 interactions with chain 2, 1 interactions with chain 3- Salt bridges: K:R.7, B:R.17, 2:R.14
- Hydrophobic interactions: B:L.28, B:F.107, B:F.107, 2:Y.18
- Hydrogen bonds: 2:R.14, 2:R.14, 3:Y.26
SQD.100: 18 residues within 4Å:- Chain 2: R.7
- Chain K: R.14, Y.18
- Chain L: V.15, Y.26
- Chain N: C.12, A.15, L.16, F.19, F.23
- Chain T: R.17, L.28, S.103, W.114
- Ligands: UNL.103, BCR.108, CLA.148, BCR.151
13 PLIP interactions:2 interactions with chain 2, 2 interactions with chain N, 4 interactions with chain L, 3 interactions with chain K, 2 interactions with chain T- Hydrogen bonds: 2:R.7, L:Y.26, K:R.14, K:R.14
- Salt bridges: 2:R.7, K:R.14, T:R.17
- Hydrophobic interactions: N:A.15, N:F.19, L:V.15, T:L.28
- Water bridges: L:E.30, L:E.30
SQD.112: 16 residues within 4Å:- Chain D: W.11, R.14, R.16
- Chain E: E.7
- Chain F: F.15, T.16, V.17, V.20
- Chain Q: T.23, V.26, I.30, D.34
- Ligands: PL9.15, CLA.78
- Chain b: Q.29, L.33
8 PLIP interactions:3 interactions with chain D, 2 interactions with chain Q, 2 interactions with chain F, 1 interactions with chain b- Hydrogen bonds: D:W.11, D:R.14, F:V.17, b:Q.29
- Salt bridges: D:R.16
- Hydrophobic interactions: Q:V.26, Q:I.30
- Water bridges: F:R.18
SQD.125: 19 residues within 4Å:- Chain S: L.200, A.203, F.265, N.267, S.270, F.273, W.278, V.281, G.282
- Chain U: Q.10, A.16, W.18
- Chain V: S.220, F.222, R.223
- Ligands: CLA.172, LMG.183, UNL.188, LHG.198
15 PLIP interactions:2 interactions with chain U, 11 interactions with chain S, 2 interactions with chain V- Hydrophobic interactions: U:W.18, S:L.200, S:A.203, S:F.265, S:W.278, S:W.278, S:W.278, S:V.281
- Hydrogen bonds: U:Q.10, S:N.267, S:S.270, S:S.270, V:S.220
- Water bridges: S:N.267
- Salt bridges: V:R.223
SQD.127: 16 residues within 4Å:- Chain 5: F.22
- Chain B: L.108, W.112, Y.116
- Chain S: W.20, N.26, R.27, L.28, L.42
- Ligands: CLA.27, BCR.39, BCR.40, UNL.50, CLA.120, UNL.130, BCR.221
8 PLIP interactions:5 interactions with chain S, 3 interactions with chain B- Hydrophobic interactions: S:L.28, S:L.42, B:L.108
- Hydrogen bonds: S:W.20, S:R.27, S:L.28, B:Y.116, B:Y.116
SQD.207: 13 residues within 4Å:- Chain 8: T.23, V.26, I.30, D.34
- Chain V: R.16
- Chain W: E.7
- Chain X: I.14, F.15, T.16, V.17, V.20
- Ligands: PL9.129, CLA.194
6 PLIP interactions:1 interactions with chain V, 2 interactions with chain X, 3 interactions with chain 8- Salt bridges: V:R.16
- Hydrogen bonds: X:F.15, X:V.17, 8:D.34
- Hydrophobic interactions: 8:V.26, 8:I.30
- 21 x GOL: GLYCEROL(Non-functional Binders)
GOL.12: 6 residues within 4Å:- Chain A: L.102, D.103
- Chain T: W.74, S.75
- Ligands: HTG.155, HTG.158
Ligand excluded by PLIPGOL.19: 9 residues within 4Å:- Chain A: L.71, G.74, N.75, N.76
- Chain D: S.290, Q.291
- Chain L: M.1
- Chain N: E.2, Y.6
Ligand excluded by PLIPGOL.44: 8 residues within 4Å:- Chain B: W.274, D.275, S.277, R.356, R.357, M.358, P.359
- Chain D: E.327
Ligand excluded by PLIPGOL.47: 8 residues within 4Å:- Chain B: I.12, N.13, A.131, L.132, G.231, N.232, I.233
- Chain G: Y.17
Ligand excluded by PLIPGOL.74: 10 residues within 4Å:- Chain A: L.341, L.343
- Chain C: M.378, T.379, H.380, A.381, G.391, V.392, E.395
- Chain P: K.47
Ligand excluded by PLIPGOL.87: 7 residues within 4Å:- Chain B: F.362, S.364, F.365
- Chain D: E.313, R.316, A.317
- Chain M: Y.166
Ligand excluded by PLIPGOL.106: 3 residues within 4Å:- Chain M: P.18, R.40, Y.238
Ligand excluded by PLIPGOL.107: 6 residues within 4Å:- Chain B: F.365, I.380, R.421
- Chain M: Y.166, D.167, S.168
Ligand excluded by PLIPGOL.111: 5 residues within 4Å:- Chain A: L.341
- Chain O: K.104
- Chain P: G.133, K.134, Y.137
Ligand excluded by PLIPGOL.126: 4 residues within 4Å:- Chain B: S.75
- Chain S: D.103, L.106
- Ligands: HTG.42
Ligand excluded by PLIPGOL.132: 10 residues within 4Å:- Chain 3: M.1
- Chain 5: E.2
- Chain S: L.71, L.72, Y.73, G.74
- Chain V: R.294
- Ligands: LMT.49, LMT.51, GOL.133
Ligand excluded by PLIPGOL.133: 9 residues within 4Å:- Chain 3: M.1
- Chain 5: E.2, Y.6
- Chain S: G.74, N.75, N.76
- Chain V: S.290, Q.291
- Ligands: GOL.132
Ligand excluded by PLIPGOL.157: 7 residues within 4Å:- Chain T: I.12, N.13, A.131, L.132, G.231, N.232, I.233
Ligand excluded by PLIPGOL.161: 8 residues within 4Å:- Chain T: W.274, D.275, S.277, R.356, R.357, M.358, P.359
- Chain V: E.327
Ligand excluded by PLIPGOL.189: 10 residues within 4Å:- Chain 7: K.47
- Chain S: L.341, L.343
- Chain U: M.378, T.379, H.380, A.381, G.391, V.392, E.395
Ligand excluded by PLIPGOL.190: 7 residues within 4Å:- Chain 7: Q.34, Y.35, K.103
- Chain U: K.61, E.65, H.380, V.399
Ligand excluded by PLIPGOL.203: 7 residues within 4Å:- Chain 4: Y.166
- Chain T: F.362, S.364
- Chain V: E.313, R.316, A.317, P.337
Ligand excluded by PLIPGOL.214: 4 residues within 4Å:- Chain 2: T.15
- Chain 5: E.25
- Chain V: S.252
- Ligands: LHG.197
Ligand excluded by PLIPGOL.218: 5 residues within 4Å:- Chain 4: L.13, K.16, P.18, R.40
- Chain U: N.355
Ligand excluded by PLIPGOL.219: 6 residues within 4Å:- Chain 4: Y.166, D.167, S.168, I.170
- Chain T: F.365, I.380
Ligand excluded by PLIPGOL.223: 6 residues within 4Å:- Chain 6: K.104
- Chain 7: I.45, G.133, K.134, Y.137
- Chain S: L.341
Ligand excluded by PLIP- 2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.14: 11 residues within 4Å:- Chain A: D.61, D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain C: E.336, R.339
- Ligands: OEY.1
19 PLIP interactions:4 interactions with chain C, 11 interactions with chain A, 4 Ligand-Water interactions- Hydrogen bonds: C:R.339, C:R.339
- Metal complexes: C:E.336, C:E.336, A:D.170, A:D.170, A:E.189, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, H2O.1, H2O.1, H2O.2, H2O.5
- Water bridges: A:D.61
OEX.128: 11 residues within 4Å:- Chain S: D.61, D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain U: E.336, R.339
- Ligands: OEY.115
19 PLIP interactions:4 interactions with chain U, 11 interactions with chain S, 4 Ligand-Water interactions- Hydrogen bonds: U:R.339, U:R.339
- Metal complexes: U:E.336, U:E.336, S:D.170, S:D.170, S:E.189, S:E.189, S:H.332, S:E.333, S:E.333, S:D.342, S:D.342, S:A.344, H2O.37, H2O.38, H2O.39, H2O.41
- Water bridges: S:D.61
- 4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.15: 26 residues within 4Å:- Chain A: F.211, H.215, L.218, I.248, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274, L.275
- Chain D: F.28, P.29
- Chain F: V.17, A.21, T.24, L.25
- Chain Q: L.27
- Ligands: CLA.7, PHO.17, CLA.77, CLA.78, LHG.88, SQD.112
16 PLIP interactions:12 interactions with chain A, 2 interactions with chain F, 1 interactions with chain D, 1 interactions with chain Q- Hydrophobic interactions: A:F.211, A:L.218, A:I.248, A:H.252, A:F.255, A:F.255, A:I.259, A:L.271, A:L.271, A:F.274, A:L.275, F:V.17, F:L.25, D:F.28, Q:L.27
- Hydrogen bonds: A:F.265
PL9.80: 30 residues within 4Å:- Chain A: F.52, I.53, I.77
- Chain D: M.188, M.189, A.192, G.193, L.199, L.200, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.23, V.26, L.29
- Chain N: F.10
- Ligands: CLA.6, LHG.81, LHG.99
25 PLIP interactions:15 interactions with chain D, 3 interactions with chain K, 3 interactions with chain A, 4 interactions with chain N- Hydrophobic interactions: D:M.189, D:L.199, D:L.200, D:T.207, D:A.239, D:W.243, D:F.251, D:F.251, D:L.257, D:F.260, D:F.260, D:F.263, D:V.264, K:L.23, K:V.26, K:L.29, A:F.52, A:I.53, A:I.77, N:F.10, N:F.10, N:F.10, N:F.10
- Hydrogen bonds: D:H.204, D:F.251
PL9.129: 26 residues within 4Å:- Chain 8: T.23
- Chain S: F.211, M.214, H.215, L.218, I.248, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain V: V.20, F.28, Y.32
- Chain X: T.24, L.25
- Ligands: CLA.121, LHG.134, PHO.192, CLA.193, CLA.194, SQD.207
18 PLIP interactions:12 interactions with chain S, 4 interactions with chain V, 1 interactions with chain X, 1 interactions with chain 8- Hydrophobic interactions: S:F.211, S:M.214, S:L.218, S:I.248, S:H.252, S:F.255, S:F.255, S:I.259, S:L.271, S:L.271, S:F.274, V:V.20, V:F.28, V:F.28, V:Y.32, X:L.25, 8:T.23
- Hydrogen bonds: S:H.215
PL9.196: 31 residues within 4Å:- Chain 2: L.23, V.26, L.29
- Chain 5: F.10
- Chain S: F.52, I.53, I.77
- Chain V: M.188, M.189, A.192, G.193, L.199, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Ligands: CLA.120, CLA.141, LHG.162, LHG.197
24 PLIP interactions:3 interactions with chain S, 2 interactions with chain 2, 3 interactions with chain 5, 16 interactions with chain V- Hydrophobic interactions: S:F.52, S:I.53, S:I.77, 2:L.23, 2:L.29, 5:F.10, 5:F.10, 5:F.10, V:M.189, V:A.192, V:L.199, V:I.203, V:T.207, V:A.239, V:W.243, V:F.251, V:F.251, V:L.257, V:F.260, V:F.263, V:V.264
- Hydrogen bonds: V:H.204, V:T.207, V:F.251
- 18 x UNL: UNKNOWN LIGAND(Non-covalent)(Non-functional Binders)
UNL.16: 8 residues within 4Å:- Chain A: L.13, R.16, F.17, W.20
- Ligands: BCR.10, SQD.13, UNL.94, CLA.140
Ligand excluded by PLIPUNL.46: 7 residues within 4Å:- Chain B: W.90, F.161
- Ligands: CLA.25, CLA.26, CLA.27, CLA.37, BCR.40
Ligand excluded by PLIPUNL.50: 9 residues within 4Å:- Chain B: D.86
- Chain S: I.96
- Chain Z: M.1, T.3, L.4
- Ligands: HTG.45, BCR.124, SQD.127, UNL.130
Ligand excluded by PLIPUNL.83: 3 residues within 4Å:- Chain D: W.22, E.121
- Ligands: UNL.84
Ligand excluded by PLIPUNL.84: 9 residues within 4Å:- Chain B: A.227
- Chain D: D.9, K.13, W.22
- Chain Q: F.24
- Ligands: CLA.29, CLA.30, LMT.48, UNL.83
Ligand excluded by PLIPUNL.94: 8 residues within 4Å:- Chain A: I.96
- Chain H: M.1, L.4, T.7
- Ligands: BCR.10, SQD.13, UNL.16, HTG.158
Ligand excluded by PLIPUNL.95: 4 residues within 4Å:- Chain I: G.25, Y.32
- Ligands: DGD.69, LMG.71
Ligand excluded by PLIPUNL.97: 7 residues within 4Å:- Chain A: W.278
- Chain C: W.17
- Chain D: R.223
- Chain J: F.36
- Ligands: SQD.11, DGD.70, LHG.82
Ligand excluded by PLIPUNL.103: 5 residues within 4Å:- Chain 2: R.7
- Chain L: I.23
- Ligands: SQD.100, LMT.102, CLA.148
Ligand excluded by PLIPUNL.113: 6 residues within 4Å:- Chain D: W.83, G.89
- Chain Q: S.15, G.16, L.20
- Ligands: CLA.78
Ligand excluded by PLIPUNL.130: 7 residues within 4Å:- Chain S: R.16, F.17, W.20
- Ligands: CLA.27, UNL.50, BCR.124, SQD.127
Ligand excluded by PLIPUNL.159: 5 residues within 4Å:- Chain T: W.90, L.148
- Ligands: CLA.138, CLA.140, BCR.153
Ligand excluded by PLIPUNL.188: 6 residues within 4Å:- Chain 1: F.36
- Chain U: W.17
- Chain V: R.223
- Ligands: SQD.125, LHG.198, BCR.225
Ligand excluded by PLIPUNL.199: 5 residues within 4Å:- Chain 8: L.20
- Chain V: W.22, L.26
- Ligands: CLA.142, UNL.200
Ligand excluded by PLIPUNL.200: 10 residues within 4Å:- Chain T: A.227, R.229
- Chain V: D.9, K.13, W.22
- Chain Y: L.38
- Ligands: CLA.142, CLA.143, LMT.154, UNL.199
Ligand excluded by PLIPUNL.211: 4 residues within 4Å:- Chain 0: G.25, Y.32
- Ligands: DGD.181, LMG.183
Ligand excluded by PLIPUNL.215: 3 residues within 4Å:- Chain 3: I.23
- Ligands: CLA.35, SQD.41
Ligand excluded by PLIPUNL.224: 7 residues within 4Å:- Chain 8: S.15, G.16, L.20
- Chain V: L.82, W.83, G.89
- Ligands: CLA.194
Ligand excluded by PLIP- 14 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.18: 8 residues within 4Å:- Chain A: L.72, Y.73
- Chain D: R.294
- Chain M: G.110
- Chain T: L.38, A.42
- Ligands: HTG.155, LMT.160
8 PLIP interactions:4 interactions with chain A, 1 interactions with chain T, 2 interactions with chain D, 1 interactions with chain M- Hydrophobic interactions: A:L.72, T:L.38
- Hydrogen bonds: A:L.72, D:R.294, D:R.294, M:G.110
- Water bridges: A:S.68, A:G.74
LMT.21: 8 residues within 4Å:- Chain A: W.14, E.15
- Chain C: W.241, R.244
- Chain H: S.25, G.26, R.30
- Ligands: CLA.58
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain H- Hydrophobic interactions: C:W.241, C:W.241
- Hydrogen bonds: C:R.244, C:R.244, H:R.30
LMT.48: 13 residues within 4Å:- Chain B: R.223, L.224, A.227, K.497, D.500
- Chain D: R.2, F.5, D.6, D.9
- Chain G: M.34
- Chain Q: R.38
- Ligands: UNL.84, HTG.85
9 PLIP interactions:6 interactions with chain B, 1 interactions with chain Q, 2 interactions with chain D- Hydrophobic interactions: B:L.224, B:A.227
- Hydrogen bonds: B:K.497, B:D.500, Q:R.38, D:R.2, D:D.9
- Salt bridges: B:R.223, B:K.497
LMT.49: 9 residues within 4Å:- Chain B: L.38, A.42
- Chain S: I.53, L.72, Y.73
- Chain V: R.294
- Ligands: HTG.42, LMT.51, GOL.132
6 PLIP interactions:3 interactions with chain S, 2 interactions with chain V, 1 interactions with chain B- Hydrophobic interactions: S:I.53, S:L.72, B:L.38
- Hydrogen bonds: S:Y.73, V:R.294, V:R.294
LMT.51: 10 residues within 4Å:- Chain 5: M.1, I.4
- Chain B: S.35, A.42, T.43
- Chain S: L.72
- Ligands: LMT.49, GOL.132, LMT.220, BCR.221
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain 5, 1 interactions with chain S- Hydrophobic interactions: B:A.42, 5:I.4, S:L.72
LMT.89: 6 residues within 4Å:- Chain E: W.35
- Chain F: F.41, I.42, Q.43
- Chain I: G.19, V.22
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:F.41
- Hydrogen bonds: F:Q.43
LMT.102: 13 residues within 4Å:- Chain 2: R.7, P.9, V.10
- Chain 3: I.24, Q.28, Q.32
- Chain L: V.27, E.30, S.31, Q.32, Q.33
- Ligands: UNL.103, CLA.148
9 PLIP interactions:3 interactions with chain 2, 1 interactions with chain 3, 5 interactions with chain L- Hydrogen bonds: 2:R.7, 2:V.10, 2:V.10, L:E.30, L:Q.32, L:Q.33
- Hydrophobic interactions: 3:I.24
- Water bridges: L:E.30, L:E.30
LMT.104: 10 residues within 4Å:- Chain 3: L.6
- Chain L: M.1, Q.5, A.12
- Chain N: M.1, I.4, F.8
- Chain T: Y.39
- Ligands: BCR.151, LMG.163
5 PLIP interactions:2 interactions with chain L, 2 interactions with chain N, 1 interactions with chain T- Hydrophobic interactions: L:A.12, N:I.4, N:F.8
- Hydrogen bonds: L:Q.5, T:Y.39
LMT.154: 10 residues within 4Å:- Chain T: R.223, L.224, K.226, K.497, D.500
- Chain V: D.6, D.9
- Chain Y: A.31, M.34
- Ligands: UNL.200
7 PLIP interactions:5 interactions with chain T, 1 interactions with chain Y, 1 interactions with chain V- Hydrophobic interactions: T:L.224, Y:A.31
- Hydrogen bonds: T:K.226, T:K.226, V:D.6
- Salt bridges: T:R.223, T:K.226
LMT.160: 7 residues within 4Å:- Chain A: L.72
- Chain N: M.1, I.4, V.7
- Chain T: A.42
- Ligands: LMT.18, BCR.108
4 PLIP interactions:3 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: N:I.4, N:V.7
- Water bridges: N:T.3, A:L.72
LMT.164: 9 residues within 4Å:- Chain S: N.12, W.14, E.15
- Chain U: W.241, R.244
- Chain Z: L.24, S.25, G.26, R.30
6 PLIP interactions:2 interactions with chain Z, 1 interactions with chain S, 3 interactions with chain U- Hydrogen bonds: Z:S.25, Z:R.30, S:N.12, U:R.244, U:R.244
- Hydrophobic interactions: U:W.241
LMT.206: 6 residues within 4Å:- Chain 0: V.22
- Chain W: W.35, S.39
- Chain X: F.41, I.42, Q.43
5 PLIP interactions:1 interactions with chain X, 1 interactions with chain 0, 3 interactions with chain W- Hydrogen bonds: X:Q.43, W:W.35, W:S.39
- Hydrophobic interactions: 0:V.22, W:W.35
LMT.216: 11 residues within 4Å:- Chain 3: E.30, S.31, Q.32, Q.33, K.34
- Chain K: P.9, V.10
- Chain L: Q.28, Q.32
- Ligands: CLA.35, SQD.41
7 PLIP interactions:3 interactions with chain 3, 2 interactions with chain K, 2 interactions with chain L- Hydrogen bonds: 3:E.30, 3:Q.33, 3:K.34, K:V.10, K:V.10, L:Q.28, L:Q.32
LMT.220: 6 residues within 4Å:- Chain 5: M.1, I.4, F.8
- Chain B: Y.39
- Ligands: LMT.51, LMG.101
2 PLIP interactions:2 interactions with chain 5- Hydrophobic interactions: 5:I.4, 5:F.8
- 10 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.20: 19 residues within 4Å:- Chain A: S.232, N.234
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467, F.478
- Chain D: Y.131, I.134, W.256, F.259, T.267, M.271
- Ligands: CLA.28, CLA.32, CLA.34, LHG.99
11 PLIP interactions:3 interactions with chain D, 6 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: D:R.129, D:Y.131, A:S.232, A:N.234
- Water bridges: D:Y.131, B:R.6, B:R.6
- Hydrophobic interactions: B:W.4, B:Y.5, B:L.460
- Salt bridges: B:R.6
LHG.81: 21 residues within 4Å:- Chain D: F.247, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.13, T.15, S.16, Y.18, L.19, L.29
- Chain N: F.10, F.17, A.20
- Ligands: CLA.5, CLA.6, PHO.8, PL9.80, LHG.99
15 PLIP interactions:5 interactions with chain K, 8 interactions with chain D, 2 interactions with chain N- Hydrophobic interactions: K:L.19, K:L.29, D:F.247, D:F.251, D:F.260, N:F.10, N:F.17
- Hydrogen bonds: K:N.13, K:T.15, K:S.16, D:S.252, D:S.252, D:N.253
- Water bridges: D:S.252, D:S.252
LHG.82: 20 residues within 4Å:- Chain A: R.140, W.142, L.200, F.273
- Chain C: F.15, W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.11, CLA.56, CLA.60, CLA.62, DGD.70, UNL.97
13 PLIP interactions:5 interactions with chain C, 4 interactions with chain D, 4 interactions with chain A- Hydrophobic interactions: C:W.18, C:W.18, C:W.425, A:L.200, A:F.273
- Hydrogen bonds: C:R.429, C:R.429, D:N.210, D:A.219, D:T.221
- Water bridges: D:T.221, A:R.140
- Salt bridges: A:R.140
LHG.88: 15 residues within 4Å:- Chain A: L.258, F.260, Y.262
- Chain D: F.17, F.28
- Chain E: T.4, T.5, E.7, R.8, P.9, F.10, S.11
- Chain F: R.18
- Ligands: CLA.7, PL9.15
11 PLIP interactions:7 interactions with chain E, 2 interactions with chain A, 1 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: E:F.10, A:F.260, D:F.28
- Hydrogen bonds: E:T.4, E:T.4, E:T.5, E:E.7, E:F.10, E:S.11, F:R.18
- Water bridges: A:Y.262
LHG.99: 22 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.3, W.4, Y.5
- Chain D: W.256, F.263
- Chain K: E.11, L.12, N.13, S.16, L.19, G.20
- Chain L: P.18, F.21
- Ligands: CLA.6, LHG.20, CLA.32, CLA.35, PL9.80, LHG.81, LMG.101
13 PLIP interactions:3 interactions with chain A, 3 interactions with chain D, 3 interactions with chain B, 3 interactions with chain K, 1 interactions with chain L- Hydrogen bonds: A:S.232, A:S.232, A:N.234, B:W.4, B:Y.5, K:E.11, K:N.13, K:S.16
- Hydrophobic interactions: D:W.256, D:F.263, D:F.263, B:W.4, L:P.18
LHG.134: 14 residues within 4Å:- Chain S: L.258, I.259, F.260, Y.262, A.263
- Chain V: F.17
- Chain W: E.7, P.9, F.10, S.11
- Chain X: R.18, A.21
- Ligands: CLA.121, PL9.129
11 PLIP interactions:2 interactions with chain X, 5 interactions with chain S, 4 interactions with chain W- Hydrophobic interactions: X:A.21, S:I.259, S:F.260, S:F.260, S:F.260, S:A.263
- Hydrogen bonds: X:R.18, W:E.7, W:F.10, W:S.11, W:S.11
LHG.162: 24 residues within 4Å:- Chain 2: E.11, L.12, N.13, S.16, L.19, G.20, L.22, L.23, V.26
- Chain 3: V.17, F.21
- Chain S: S.232, N.234
- Chain T: P.3, W.4, Y.5
- Chain V: W.256, F.263
- Ligands: CLA.120, CLA.148, LMG.163, PL9.196, LHG.197, LHG.204
14 PLIP interactions:5 interactions with chain 2, 1 interactions with chain 3, 2 interactions with chain T, 3 interactions with chain S, 3 interactions with chain V- Hydrophobic interactions: 2:L.22, 2:V.26, 3:V.17, V:W.256, V:F.263, V:F.263
- Hydrogen bonds: 2:E.11, 2:N.13, 2:S.16, T:W.4, T:Y.5, S:S.232, S:S.232, S:N.234
LHG.197: 23 residues within 4Å:- Chain 2: N.13, T.15, S.16, Y.18, L.19, L.29
- Chain 5: F.17, A.20
- Chain S: M.37
- Chain V: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Ligands: CLA.119, PHO.122, LHG.162, PL9.196, GOL.214
10 PLIP interactions:5 interactions with chain V, 3 interactions with chain 2, 2 interactions with chain 5- Hydrophobic interactions: V:F.251, V:F.260, 2:L.29, 5:F.17, 5:F.17
- Hydrogen bonds: V:S.252, V:S.252, V:N.253, 2:N.13, 2:S.16
LHG.198: 19 residues within 4Å:- Chain S: R.140, W.142, F.273, V.280
- Chain U: W.18, W.425, R.429
- Chain V: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.125, CLA.168, CLA.172, CLA.174, DGD.182, UNL.188
12 PLIP interactions:3 interactions with chain V, 5 interactions with chain U, 4 interactions with chain S- Hydrogen bonds: V:N.210, V:A.219, V:T.221, U:R.429, U:R.429
- Hydrophobic interactions: U:W.18, U:W.18, U:W.425, S:W.142, S:F.273, S:V.280
- Salt bridges: S:R.140
LHG.204: 20 residues within 4Å:- Chain 3: P.18
- Chain S: N.234
- Chain T: W.4, Y.5, R.6, L.460, F.463, W.467
- Chain V: R.129, Y.131, I.134, W.256, F.259, T.267, M.271
- Ligands: CLA.141, CLA.145, CLA.147, LHG.162, LMG.163
12 PLIP interactions:3 interactions with chain V, 1 interactions with chain S, 1 interactions with chain 3, 7 interactions with chain T- Hydrogen bonds: V:R.129, V:Y.131, S:N.234
- Water bridges: V:Y.131, T:R.6, T:R.6, T:R.6
- Hydrophobic interactions: 3:P.18, T:W.4, T:Y.5, T:L.460
- Salt bridges: T:R.6
- 11 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.42: 11 residues within 4Å:- Chain 4: G.110, G.111
- Chain B: S.73, S.75, W.77, E.93, L.97
- Chain S: Y.73
- Ligands: LMT.49, BCR.124, GOL.126
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:E.93, B:L.97
- Hydrogen bonds: B:S.75, B:E.93
- Water bridges: B:L.41
HTG.43: 13 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, F.429, E.430, F.431, T.433
- Chain M: Q.174, A.175, K.176, E.177, E.178
11 PLIP interactions:4 interactions with chain M, 7 interactions with chain B- Hydrogen bonds: M:Q.174, M:K.176, B:K.340, B:K.340, B:K.422, B:E.430, B:F.431, B:F.431
- Water bridges: M:E.177, M:E.177
- Hydrophobic interactions: B:Y.419
HTG.45: 8 residues within 4Å:- Chain B: W.74, D.86, G.88, F.89, L.97
- Chain S: I.50, L.102
- Ligands: UNL.50
6 PLIP interactions:2 interactions with chain S, 3 interactions with chain B, 1 interactions with chain 4- Hydrophobic interactions: S:I.50, B:W.74, B:L.97
- Water bridges: S:L.102, 4:K.67
- Hydrogen bonds: B:D.86
HTG.73: 3 residues within 4Å:- Chain C: W.79, F.164
- Ligands: LMG.72
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.79
HTG.85: 8 residues within 4Å:- Chain D: G.3, W.4, F.5, D.6
- Chain G: W.24, T.27, P.28
- Ligands: LMT.48
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain G- Hydrogen bonds: D:G.3, D:G.3, D:F.5, D:D.6
- Hydrophobic interactions: G:W.24, G:T.27
HTG.110: 6 residues within 4Å:- Chain P: A.89, E.90, R.96, S.97, D.99, I.100
4 PLIP interactions:4 interactions with chain P- Hydrogen bonds: P:E.90, P:E.90, P:R.96, P:D.99
HTG.155: 10 residues within 4Å:- Chain A: Y.73
- Chain M: G.110, G.111
- Chain T: S.73, S.75, W.77, E.93, L.97
- Ligands: GOL.12, LMT.18
6 PLIP interactions:4 interactions with chain T, 1 interactions with chain A, 1 interactions with chain M- Hydrophobic interactions: T:L.97
- Hydrogen bonds: T:S.73, T:E.93
- Water bridges: T:L.41, A:Y.73, M:G.111
HTG.156: 3 residues within 4Å:- Chain T: W.184, I.206
- Ligands: CLA.135
3 PLIP interactions:3 interactions with chain T- Hydrophobic interactions: T:W.184, T:I.206
- Water bridges: T:W.184
HTG.158: 10 residues within 4Å:- Chain A: I.50, L.102
- Chain T: W.74, D.86, G.88, F.89
- Ligands: BCR.10, GOL.12, SQD.13, UNL.94
7 PLIP interactions:1 interactions with chain M, 2 interactions with chain A, 4 interactions with chain T- Water bridges: M:K.67, A:L.102
- Hydrophobic interactions: A:I.50, T:W.74
- Hydrogen bonds: T:D.86, T:G.88, T:G.88
HTG.185: 6 residues within 4Å:- Chain U: W.79, F.163, F.164, G.165
- Ligands: CLA.166, LMG.184
2 PLIP interactions:2 interactions with chain U- Hydrogen bonds: U:W.79, U:F.163
HTG.201: 5 residues within 4Å:- Chain V: G.3, W.4, F.5
- Chain Y: W.24, P.28
4 PLIP interactions:3 interactions with chain V, 1 interactions with chain Y- Hydrophobic interactions: V:W.4, Y:W.24
- Hydrogen bonds: V:F.5
- Water bridges: V:G.3
- 12 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.52: 18 residues within 4Å:- Chain A: F.93, W.97, E.98, F.117, L.120, F.155
- Chain C: L.196, K.197, S.198, F.200, E.203, W.205
- Chain H: K.5, Y.9
- Ligands: CLA.9, CLA.57, CLA.58, DGD.68
12 PLIP interactions:6 interactions with chain A, 5 interactions with chain C, 1 interactions with chain H- Hydrophobic interactions: A:F.117, A:L.120, A:F.155, C:F.200, C:W.205, C:W.205
- Hydrogen bonds: A:W.97, A:E.98, A:E.98, C:S.198, H:Y.9
- Water bridges: C:G.201
LMG.71: 14 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.21
- Chain J: D.14, V.18, V.21, L.22
- Chain R: Q.5, I.9
- Ligands: CLA.56, CLA.60, DGD.69, UNL.95
10 PLIP interactions:4 interactions with chain C, 2 interactions with chain R, 1 interactions with chain I, 3 interactions with chain J- Hydrogen bonds: C:H.56
- Water bridges: C:H.56, R:Q.5
- Salt bridges: C:H.56, C:H.56
- Hydrophobic interactions: R:I.9, I:I.21, J:V.18, J:V.21, J:L.22
LMG.72: 14 residues within 4Å:- Chain C: W.79, D.89, F.91, V.95, V.96, V.99, H.100, S.103
- Ligands: CLA.55, CLA.65, BCR.66, HTG.73
- Chain a: F.59, V.62
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:W.79, C:V.95, C:V.96, C:V.99
LMG.86: 18 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: T.29, I.36, M.39, Q.40
- Chain I: F.27, G.30, A.31, L.35
- Ligands: CLA.7, DGD.70, BCR.79, MG.96
14 PLIP interactions:7 interactions with chain D, 4 interactions with chain I, 3 interactions with chain F- Hydrophobic interactions: D:L.39, D:F.63, D:F.63, D:F.63, I:F.27
- Hydrogen bonds: D:G.60, D:F.63, I:G.30, F:M.39, F:Q.40
- Water bridges: D:N.62, I:F.27, I:G.36, F:I.42
LMG.101: 16 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328
- Chain D: I.274
- Chain K: F.35
- Chain L: N.4, L.6, A.10, F.14
- Ligands: CLA.28, CLA.35, BCR.38, BCR.39, LHG.99, LMT.220
7 PLIP interactions:1 interactions with chain K, 2 interactions with chain L, 1 interactions with chain D, 3 interactions with chain B- Hydrophobic interactions: K:F.35, L:F.14, D:I.274
- Hydrogen bonds: L:N.4, B:Y.39, B:T.326, B:T.326
LMG.131: 19 residues within 4Å:- Chain S: F.93, W.97, E.98, F.117, L.120, L.121, F.155
- Chain U: L.195, L.196, S.198, F.200, E.203, W.205, F.266
- Chain Z: K.5, Y.9
- Ligands: CLA.123, CLA.169, DGD.180
13 PLIP interactions:5 interactions with chain U, 2 interactions with chain Z, 6 interactions with chain S- Hydrophobic interactions: U:W.205, U:F.266, S:F.117, S:L.120, S:F.155
- Hydrogen bonds: U:E.203, Z:Y.9, Z:Y.9, S:W.97, S:E.98, S:E.98
- Water bridges: U:S.198, U:S.198
LMG.163: 21 residues within 4Å:- Chain 2: F.35
- Chain 3: N.4, L.6, A.10, V.17
- Chain T: Y.39, T.326, G.327, P.328, K.331, F.452, A.453
- Chain V: I.274
- Ligands: LMT.104, CLA.141, CLA.147, CLA.148, BCR.151, BCR.152, LHG.162, LHG.204
10 PLIP interactions:3 interactions with chain 3, 1 interactions with chain V, 1 interactions with chain 2, 5 interactions with chain T- Hydrophobic interactions: 3:V.17, V:I.274, 2:F.35, T:F.452, T:A.453
- Hydrogen bonds: 3:N.4, T:T.326, T:T.326
- Water bridges: 3:N.4, T:T.326
LMG.183: 14 residues within 4Å:- Chain 0: I.21
- Chain 1: D.14, V.18, V.21
- Chain 9: Q.5, I.9
- Chain U: F.52, H.56, Q.66
- Ligands: SQD.125, CLA.168, CLA.172, DGD.181, UNL.211
4 PLIP interactions:1 interactions with chain 0, 1 interactions with chain 1, 1 interactions with chain 9, 1 interactions with chain U- Hydrophobic interactions: 0:I.21, 1:V.21, 9:I.9
- Salt bridges: U:H.56
LMG.184: 13 residues within 4Å:- Chain U: W.79, D.89, F.91, V.95, V.96, V.99, H.100, S.103
- Ligands: CLA.167, CLA.177, BCR.178, HTG.185
- Chain c: V.62
4 PLIP interactions:4 interactions with chain U- Hydrophobic interactions: U:W.79, U:V.96, U:V.99
- Hydrogen bonds: U:D.89
LMG.202: 17 residues within 4Å:- Chain 0: F.27, F.28, G.30, A.31, L.35
- Chain V: Y.57, G.60, C.61, N.62, F.63
- Chain X: I.36, M.39, Q.40
- Ligands: CLA.121, DGD.182, BCR.195, MG.212
13 PLIP interactions:2 interactions with chain X, 6 interactions with chain 0, 5 interactions with chain V- Hydrogen bonds: X:M.39, X:Q.40, 0:G.30, V:F.63
- Hydrophobic interactions: 0:F.27, 0:F.28, V:F.63, V:F.63, V:F.63
- Water bridges: 0:F.27, 0:L.35, 0:G.36, V:N.62
LMG.226: 12 residues within 4Å:- Chain C: F.109, Y.113, R.117
- Ligands: CLA.65
- Chain a: M.19, Y.27, W.33, K.37, I.40, F.41, W.47, I.48
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain a- Hydrophobic interactions: C:F.109, C:F.109, a:I.40, a:F.41, a:I.48
- Hydrogen bonds: C:Y.113, C:R.117, C:R.117
- Salt bridges: a:K.37, a:K.37
LMG.227: 14 residues within 4Å:- Chain U: F.109, Y.113, R.117
- Ligands: CLA.175, CLA.177
- Chain c: M.19, Y.27, W.33, K.37, I.40, F.41, S.44, W.47, I.48
11 PLIP interactions:8 interactions with chain c, 3 interactions with chain U- Hydrophobic interactions: c:M.19, c:I.40, c:F.41, c:W.47, c:W.47, c:I.48, U:F.109, U:F.109
- Hydrogen bonds: c:W.33, U:R.117
- Salt bridges: c:K.37
- 8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.68: 30 residues within 4Å:- Chain A: L.91, S.148, A.152, F.155, I.160, I.163
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, F.417
- Ligands: CLA.9, LMG.52, CLA.58
19 PLIP interactions:15 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:F.200, C:F.200, C:W.205, C:V.207, C:F.417, A:A.152, A:F.155, A:I.160, A:I.163
- Hydrogen bonds: C:G.202, C:N.276, C:N.276, C:T.277, C:T.277, C:D.342, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200
DGD.69: 19 residues within 4Å:- Chain A: F.197, L.297
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410
- Chain I: F.28, Y.32
- Ligands: CLA.56, CLA.60, DGD.70, LMG.71, UNL.95
17 PLIP interactions:4 interactions with chain I, 11 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: I:F.28, I:F.28, I:F.28, C:L.386, C:W.407, A:F.197, A:L.297
- Water bridges: I:Y.32, C:E.65, C:Q.66, C:G.67, C:G.67
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402
DGD.70: 27 residues within 4Å:- Chain A: Q.199, L.200, A.203, W.278, F.300, N.301, F.302, S.305
- Chain C: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain I: A.31, Y.32, G.36, S.37, S.38
- Chain P: Q.34
- Ligands: CLA.7, CLA.56, DGD.69, LHG.82, LMG.86, UNL.97
14 PLIP interactions:4 interactions with chain A, 5 interactions with chain C, 3 interactions with chain I, 2 interactions with chain P- Hydrophobic interactions: A:L.200, A:A.203, A:W.278
- Hydrogen bonds: A:S.305, C:N.387, C:N.397, C:S.398, C:V.399, I:G.36, P:Q.34, P:Q.34
- Water bridges: C:N.400, I:G.36, I:S.38
DGD.93: 23 residues within 4Å:- Chain B: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, F.462
- Chain D: G.76, H.77, I.113, I.149, L.152, G.153, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.23, CLA.29
19 PLIP interactions:6 interactions with chain D, 8 interactions with chain G, 5 interactions with chain B- Hydrophobic interactions: D:I.113, D:I.149, D:L.152, D:L.281, G:L.45, G:Y.48, G:Y.48, G:Y.48, B:F.462
- Hydrogen bonds: D:H.77, D:S.155, G:N.49, G:V.59, G:S.60, G:W.61, B:Y.192, B:Y.192, B:S.276, B:S.276
DGD.180: 33 residues within 4Å:- Chain S: L.91, S.148, L.151, A.152, F.155, I.160, I.163
- Chain U: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, M.263, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.123, LMG.131, CLA.169, CLA.170
22 PLIP interactions:5 interactions with chain S, 17 interactions with chain U- Hydrophobic interactions: S:L.151, S:A.152, S:F.155, S:I.160, S:I.163, U:P.199, U:F.200, U:W.205, U:V.207, U:F.266, U:F.266
- Hydrogen bonds: U:G.202, U:N.276, U:N.276, U:T.277, U:T.277, U:T.277, U:D.342, U:D.342, U:R.344, U:R.344
- Water bridges: U:F.200
DGD.181: 19 residues within 4Å:- Chain 0: Y.32
- Chain S: H.195, F.197
- Chain U: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411
- Ligands: CLA.168, CLA.172, DGD.182, LMG.183, UNL.211
12 PLIP interactions:10 interactions with chain U, 1 interactions with chain 0, 1 interactions with chain S- Hydrophobic interactions: U:L.386, S:F.197
- Hydrogen bonds: U:S.388, U:N.400, U:N.400, U:V.402, U:V.402
- Water bridges: U:Y.64, U:E.65, U:Q.66, U:G.67, 0:Y.32
DGD.182: 29 residues within 4Å:- Chain 0: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain 7: Q.34
- Chain S: Q.199, L.200, A.203, W.278, F.300, N.301, F.302, S.305
- Chain U: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain V: N.62
- Ligands: CLA.121, CLA.168, CLA.172, DGD.181, LHG.198, LMG.202
12 PLIP interactions:4 interactions with chain U, 2 interactions with chain 7, 2 interactions with chain 0, 4 interactions with chain S- Hydrogen bonds: U:N.387, U:N.397, U:S.398, U:V.399, 7:Q.34, 7:Q.34, 0:G.36, 0:S.38, S:S.305
- Hydrophobic interactions: S:A.203, S:W.278, S:F.300
DGD.210: 23 residues within 4Å:- Chain T: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, A.455, F.462
- Chain V: G.76, H.77, I.113, I.149, L.152, G.153, L.281
- Chain Y: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.142
23 PLIP interactions:8 interactions with chain Y, 9 interactions with chain V, 6 interactions with chain T- Hydrophobic interactions: Y:L.45, Y:Y.48, Y:Y.48, Y:Y.48, V:I.113, V:I.149, V:L.152, V:L.152, V:L.152, V:L.281, T:Y.257, T:A.455, T:F.462
- Hydrogen bonds: Y:N.49, Y:V.59, Y:S.60, Y:W.61, V:H.77, V:S.155, T:Y.192
- Water bridges: V:H.77, T:Y.192, T:Y.192
- 7 x CA: CALCIUM ION(Non-covalent)
CA.75: 6 residues within 4Å:- Chain C: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:N.137, C:T.140, C:T.141, C:H.233, C:T.236
CA.91: 3 residues within 4Å:- Chain F: R.44
- Chain P: E.2, E.23
No protein-ligand interaction detected (PLIP)CA.105: 6 residues within 4Å:- Chain M: T.136, S.137, T.138, D.139, N.198, V.199
4 PLIP interactions:3 interactions with chain M, 1 Ligand-Water interactions- Metal complexes: M:T.136, M:D.139, M:V.199, H2O.27
CA.186: 6 residues within 4Å:- Chain U: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain U- Metal complexes: U:N.137, U:T.140, U:T.141, U:H.233, U:T.236
CA.187: 5 residues within 4Å:- Chain U: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:5 interactions with chain U- Metal complexes: U:F.4, U:T.6, U:D.9, U:E.11, U:S.12
CA.208: 2 residues within 4Å:- Chain 7: E.23
- Chain X: R.44
2 PLIP interactions:1 interactions with chain 7, 1 Ligand-Water interactions- Metal complexes: 7:E.23, H2O.70
CA.217: 3 residues within 4Å:- Chain 4: T.136, N.198, V.199
2 PLIP interactions:1 interactions with chain 4, 1 Ligand-Water interactions- Metal complexes: 4:T.136, H2O.62
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.76: 9 residues within 4Å:- Chain A: H.215, E.244, Y.246, H.272
- Chain D: H.204, Y.234, K.254, H.258
- Ligands: FE2.2
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:H.204, A:Y.246
- Water bridges: A:S.268
BCT.191: 10 residues within 4Å:- Chain S: H.215, V.219, E.244, Y.246, H.272
- Chain V: H.204, Y.234, K.254, H.258
- Ligands: FE2.116
2 PLIP interactions:1 interactions with chain V, 1 interactions with chain S- Hydrogen bonds: V:Y.234, S:H.215
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.90: 18 residues within 4Å:- Chain E: F.10, I.13, R.18, Y.19, H.23, T.26, I.27, L.30
- Chain F: I.14, R.18, W.19, V.22, H.23, A.26, V.27, I.30
- Chain b: A.18, I.22
23 PLIP interactions:11 interactions with chain F, 2 interactions with chain b, 10 interactions with chain E,- Hydrophobic interactions: F:I.14, F:W.19, F:V.22, F:A.26, F:V.27, F:I.30, b:A.18, b:I.22, E:I.13, E:T.26, E:I.27, E:I.27, E:L.30
- Water bridges: F:R.18, E:R.8, E:Y.19
- Salt bridges: F:R.18, E:R.18
- pi-Stacking: F:W.19, F:W.19, E:Y.19
- Metal complexes: F:H.23, E:H.23
HEM.205: 17 residues within 4Å:- Chain W: F.10, I.13, R.18, Y.19, I.22, H.23, T.26, I.27, L.30
- Chain X: F.15, R.18, W.19, V.22, H.23, A.26, V.27, I.30
19 PLIP interactions:9 interactions with chain X, 10 interactions with chain W,- Hydrophobic interactions: X:F.15, X:W.19, X:V.22, X:A.26, X:I.30, W:F.10, W:I.13, W:I.22, W:T.26, W:I.27, W:L.30
- Salt bridges: X:R.18, W:R.18, W:H.23
- pi-Stacking: X:W.19, X:W.19, W:Y.19
- Metal complexes: X:H.23, W:H.23
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.96: 5 residues within 4Å:- Chain I: G.30, A.33, G.34, L.35
- Ligands: LMG.86
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.30, I:A.33, I:L.35, H2O.25
MG.212: 5 residues within 4Å:- Chain 0: G.30, A.33, G.34, L.35
- Ligands: LMG.202
4 PLIP interactions:3 interactions with chain 0, 1 Ligand-Water interactions- Metal complexes: 0:G.30, 0:A.33, 0:L.35, H2O.60
- 2 x HEC: HEME C(Covalent)
HEC.109: 24 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
18 PLIP interactions:18 interactions with chain P,- Hydrophobic interactions: P:T.46, P:N.49, P:L.52, P:L.54, P:L.59, P:L.72, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- Water bridges: P:N.49
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
HEC.222: 22 residues within 4Å:- Chain 7: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, Y.82, I.88, H.92, P.93, I.115, I.119
18 PLIP interactions:18 interactions with chain 7,- Hydrophobic interactions: 7:A.36, 7:T.46, 7:N.49, 7:L.52, 7:L.54, 7:L.72, 7:Y.75, 7:I.88, 7:P.93, 7:I.115, 7:I.119
- Hydrogen bonds: 7:D.53
- Water bridges: 7:N.49, 7:Y.75, 7:Y.82
- pi-Stacking: 7:Y.75
- Metal complexes: 7:H.41, 7:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, H. et al., Oxygen-evolving photosystem II structures during S 1 -S 2 -S 3 transitions. Nature (2024)
- Release Date
- 2024-01-17
- Peptides
- Photosystem II protein D1: AS
Photosystem II CP47 reaction center protein: BT
Photosystem II CP43 reaction center protein: CU
Photosystem II D2 protein: DV
Cytochrome b559 subunit alpha: EW
Cytochrome b559 subunit beta: FX
Photosystem II reaction center protein H: GY
Photosystem II reaction center protein I: HZ
Photosystem II reaction center protein J: I0
Photosystem II reaction center protein K: J1
Photosystem II reaction center protein L: K2
Photosystem II reaction center protein M: L3
Photosystem II manganese-stabilizing polypeptide: M4
Photosystem II reaction center protein T: N5
Photosystem II 12 kDa extrinsic protein: O6
Cytochrome c-550: P7
Photosystem II reaction center protein X: Q8
Photosystem II reaction center protein Ycf12: R9
Photosystem II reaction center protein Z: ac
Photosystem II protein Y: b - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AS
aB
BT
bC
CU
cD
DV
dE
EW
eF
FX
fG
HY
hH
IZ
iI
J0
jJ
K1
kK
L2
lL
M3
mM
O4
oN
T5
tO
U6
uP
V7
vQ
X8
xR
Y9
ya
Zc
zb
R - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8irh.1
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-microsecond delay
Photosystem II protein D1
Toggle Identical (AS)Photosystem II CP47 reaction center protein
Toggle Identical (BT)Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Toggle Identical (GY)Photosystem II reaction center protein I
Toggle Identical (HZ)Photosystem II reaction center protein J
Photosystem II reaction center protein K
Toggle Identical (J1)Photosystem II reaction center protein L
Toggle Identical (K2)Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Toggle Identical (M4)Photosystem II reaction center protein T
Toggle Identical (N5)Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Toggle Identical (P7)Photosystem II reaction center protein X
Toggle Identical (Q8)Photosystem II reaction center protein Ycf12
Toggle Identical (R9)Photosystem II reaction center protein Z
Toggle Identical (ac)Photosystem II protein Y
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1izl.1 | 1mz4.1 | 1s5l.1 | 1s5l.2 | 1w5c.1 | 1w5c.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 more...less...5b66.1 | 5e79.1 | 5e7c.1 | 5gth.1 | 5gth.2 | 5gti.1 | 5gti.2 | 5h2f.1 | 5h2f.2 | 5kaf.1 | 5kai.1 | 5mx2.1 | 5mx2.2 | 5tis.1 | 5v2c.1 | 5ws5.1 | 5ws5.2 | 5ws6.1 | 5ws6.2 | 5zzn.1 | 5zzn.2 | 6dhe.1 | 6dhf.1 | 6dhg.1 | 6dhh.1 | 6dho.1 | 6dhp.1 | 6jlj.1 | 6jlk.1 | 6jll.1 | 6jlm.1 | 6jln.1 | 6jlo.1 | 6jlp.1 | 6w1o.1 | 6w1p.1 | 6w1q.1 | 6w1r.1 | 6w1t.1 | 6w1u.1 | 6w1v.1 | 7cji.1 | 7cjj.1 | 7cou.1 | 7czl.1 | 7d1t.1 | 7d1u.1 | 7dxa.1 | 7dxh.1 | 7eda.1 | 7nho.1 | 7nhp.1 | 7nhq.1 | 7rf1.1 | 7rf2.1 | 7rf3.1 | 7rf4.1 | 7rf5.1 | 7rf6.1 | 7rf7.1 | 7rf8.1 | 7yq2.1 | 7yq7.1 | 8ez5.1 | 8f4c.1 | 8f4d.1 | 8f4e.1 | 8f4f.1 | 8f4g.1 | 8f4h.1 | 8f4i.1 | 8f4j.1 | 8f4k.1 | 8gn0.1 | 8gn1.1 | 8gn2.1 | 8ir5.1 | 8ir6.1 | 8ir7.1 | 8ir8.1 | 8ir9.1 | 8ira.1 | 8irb.1 | 8irc.1 | 8ird.1 | 8ire.1 | 8irf.1 | 8irg.1 | 8iri.1 | 9evx.1