- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 66 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 1 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.3: 11 residues within 4Å:- Chain A: D.51, D.160, V.175, E.179, H.322, E.323, H.327, D.332, A.334
- Chain C: E.336, R.339
18 PLIP interactions:10 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: A:D.160, A:D.160, A:E.179, A:E.179, A:H.322, A:E.323, A:E.323, A:D.332, A:D.332, A:A.334, C:E.336, C:E.336, H2O.1, H2O.2, H2O.4, H2O.4
- Hydrogen bonds: C:R.339, C:R.339
- 1 x FE2: FE (II) ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 35 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.7: 28 residues within 4Å:- Chain A: F.109, Y.137, P.140, L.141, S.143, V.147, F.172, M.173, F.176, Q.177, I.182, L.183, H.188, G.191, V.192, F.196, V.273, T.276, A.277, I.280
- Chain D: L.172, L.195
- Chain M: F.17
- Ligands: CLA.8, CLA.9, PHO.10, CLA.109, LHG.114
20 PLIP interactions:16 interactions with chain A, 3 interactions with chain D, 1 interactions with chain M,- Hydrophobic interactions: A:F.109, A:P.140, A:F.172, A:M.173, A:F.176, A:Q.177, A:I.182, A:I.182, A:L.183, A:L.183, A:F.196, A:F.196, A:T.276, A:I.280, D:L.172, D:L.172, D:L.195, M:F.17
- Water bridges: A:I.280
- Metal complexes: A:H.188
CLA.8: 23 residues within 4Å:- Chain A: T.35, F.38, V.147, M.162, I.166, T.169, F.170, F.172, M.173
- Chain D: M.188, V.191, A.192, L.195, G.196, L.199
- Chain K: L.28
- Ligands: CLA.7, PHO.10, SQD.18, CLA.109, PL9.112, LHG.114, LHG.141
7 PLIP interactions:4 interactions with chain A, 2 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:F.38, A:V.147, A:F.170, A:F.172, D:V.191, D:L.199
- Metal complexes: H2O.3
CLA.9: 19 residues within 4Å:- Chain A: Q.189, V.192, A.193, F.196, G.197, L.200, W.268
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.7, PHO.11, PL9.15, DGD.82, CLA.109, LMG.135
12 PLIP interactions:6 interactions with chain D, 5 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: D:F.147, D:I.168, D:I.168, D:F.171, D:L.172, D:L.172, A:V.192, A:F.196, A:L.200, A:W.268
- pi-Stacking: A:F.196
- Metal complexes: H2O.4
CLA.12: 28 residues within 4Å:- Chain A: V.25, I.26, P.29, T.30, F.83, Y.84, P.85, I.86, W.87, Q.103, L.104, F.107, H.108, L.111
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, F.19
- Ligands: BCR.13, LHG.16, CLA.69, CLA.70, BCR.79, LMG.129, UNL.130
18 PLIP interactions:5 interactions with chain H, 13 interactions with chain A,- Hydrophobic interactions: H:Y.9, H:V.11, H:F.15, H:F.15, H:F.19, A:I.26, A:P.29, A:T.30, A:F.83, A:P.85, A:I.86, A:W.87, A:W.87, A:F.107, A:L.111
- Hydrogen bonds: A:I.86
- Salt bridges: A:H.108
- Metal complexes: A:H.108
CLA.27: 10 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, I.43, L.54
- Ligands: CLA.28, HTG.49, RRX.127
9 PLIP interactions:4 interactions with chain G, 4 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: G:F.40, G:F.40, G:I.43, G:L.54, B:W.184, B:P.186, B:F.189, B:F.189
- Metal complexes: H2O.5
CLA.28: 26 residues within 4Å:- Chain B: W.184, G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain D: L.148
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.27, CLA.29, CLA.31, CLA.35, RRX.127, DGD.128
19 PLIP interactions:5 interactions with chain G, 13 interactions with chain B, 1 interactions with chain D,- Hydrophobic interactions: G:F.37, G:F.40, G:I.44, G:I.44, G:I.44, B:W.184, B:F.189, B:F.189, B:A.199, B:A.204, B:V.207, B:V.207, B:F.245, B:F.246, B:F.246, B:F.249, B:V.250, D:L.148
- Metal complexes: B:H.200
CLA.29: 26 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.250, V.251, T.261
- Chain G: M.34, F.37, L.38
- Ligands: CLA.28, CLA.30, CLA.31, CLA.32, CLA.34, CLA.35, CLA.36, RRX.127
17 PLIP interactions:15 interactions with chain B, 2 interactions with chain G,- Hydrophobic interactions: B:L.68, B:A.145, B:L.148, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:A.247, B:V.250, B:V.251, G:F.37, G:L.38
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.30: 22 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.29, CLA.31, CLA.33, CLA.36, CLA.37, CLA.38, CLA.39, CLA.41
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:F.64, B:F.64, B:L.148, B:V.244, B:A.247, B:A.248, B:V.251, B:F.457, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.31: 28 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, C.149, A.204
- Ligands: CLA.28, CLA.29, CLA.30, CLA.32, CLA.35, CLA.36, CLA.38, CLA.41, BCR.45, UNL.50
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:V.29, B:A.30, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142, B:A.145
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.32: 23 residues within 4Å:- Chain B: L.68, G.69, V.70, F.89, W.90, V.95, A.98, H.99, V.101, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.29, CLA.31, BCR.45, UNL.50, HTG.52, UNL.53
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:L.68, B:V.70, B:F.89, B:F.89, B:F.89, B:W.90, B:W.90, B:A.98, B:V.101, B:L.148, B:F.155, B:F.161, B:F.161
- Salt bridges: B:H.99
- Metal complexes: B:H.156
CLA.33: 23 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453
- Chain D: F.186
- Chain K: A.26, F.33
- Ligands: LHG.23, CLA.30, CLA.39, LMG.47, DMS.143
13 PLIP interactions:10 interactions with chain B, 1 interactions with chain D, 1 interactions with chain K, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Y.39, B:F.60, B:L.323, B:F.324, B:T.326, B:W.449, B:W.449, D:F.186, K:F.33
- Hydrogen bonds: B:Y.39, B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.11
CLA.34: 29 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: L.26, L.79, F.110, I.113, M.116, L.117, F.120
- Chain G: L.38, L.42, L.45
- Ligands: CLA.29, CLA.35, CLA.36, CLA.110, LMG.116, UNL.117
19 PLIP interactions:3 interactions with chain G, 7 interactions with chain D, 9 interactions with chain B,- Hydrophobic interactions: G:L.38, G:L.42, G:L.45, D:L.26, D:L.79, D:F.110, D:I.113, D:I.113, D:M.116, D:L.117, B:A.242, B:F.245, B:F.246, B:F.462, B:L.473
- Hydrogen bonds: B:S.238
- Water bridges: B:S.239
- pi-Cation interactions: B:H.465
- Metal complexes: B:H.465
CLA.35: 26 residues within 4Å:- Chain B: F.138, L.142, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228, M.230
- Chain G: T.26, T.27, L.29, M.30, F.33, M.34
- Ligands: CLA.28, CLA.29, CLA.31, CLA.34, CLA.36, LMG.116, RRX.127
16 PLIP interactions:4 interactions with chain G, 12 interactions with chain B,- Hydrophobic interactions: G:L.29, G:M.30, G:F.33, B:F.138, B:F.138, B:F.138, B:L.142, B:V.207, B:A.211, B:F.214, B:F.214, B:L.224, B:L.228
- Hydrogen bonds: G:T.26
- Salt bridges: B:H.215
- Metal complexes: B:H.215
CLA.36: 24 residues within 4Å:- Chain B: L.134, M.137, F.138, H.141, L.142, L.144, A.145, L.228, M.230, I.233, T.235, V.236, S.239, S.240, A.243, V.244
- Ligands: CLA.29, CLA.30, CLA.31, CLA.34, CLA.35, CLA.38, CLA.41, RRX.127
10 PLIP interactions:9 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:L.144, B:L.228, B:M.230, B:I.233, B:T.235, B:V.244
- Metal complexes: H2O.7
CLA.37: 20 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Ligands: LHG.23, CLA.30, CLA.38, CLA.39, CLA.40
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:W.4, B:W.4, B:L.237, B:L.237, B:I.241, B:F.461, B:F.463, B:F.463
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:H.468, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.38: 20 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, I.241, V.244
- Ligands: CLA.30, CLA.31, CLA.36, CLA.37, CLA.39, CLA.40, CLA.41
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:H.8, B:L.11, B:L.11, B:I.12, B:L.18, B:H.22, B:H.25, B:I.233, B:V.236, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.39: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: LHG.23, CLA.30, CLA.33, CLA.37, CLA.38, CLA.40, BCR.43, BCR.44, LMG.47
6 PLIP interactions:6 interactions with chain B,- Hydrophobic interactions: B:V.29, B:W.32, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.40: 17 residues within 4Å:- Chain B: L.2, V.7, H.8, V.10, L.11, M.24, L.28, W.114
- Chain K: Q.6, V.8
- Ligands: CLA.37, CLA.38, CLA.39, BCR.43, SQD.46, LHG.141, HTG.145
7 PLIP interactions:7 interactions with chain B,- Hydrophobic interactions: B:V.7, B:V.7, B:L.11, B:M.24, B:L.28, B:W.114
- Metal complexes: B:H.8
CLA.41: 20 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, F.122, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.10, L.13, N.14
- Ligands: CLA.30, CLA.31, CLA.36, CLA.38, CLA.42, BCR.45
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain G,- Hydrophobic interactions: B:I.19, B:F.122, B:L.132, B:I.140, B:L.144, G:L.10, G:L.13
- Metal complexes: B:H.141
CLA.42: 14 residues within 4Å:- Chain B: I.19, L.23, L.106, A.109, W.112, H.113, L.119, L.121, F.122
- Chain G: T.4, L.6, G.7
- Ligands: CLA.41, BCR.45
12 PLIP interactions:10 interactions with chain B, 2 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.23, B:L.106, B:A.109, B:W.112, B:W.112, B:L.119, B:F.122, G:L.6
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
- Water bridges: G:L.6
CLA.65: 22 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, L.167, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.66, CLA.67, CLA.70, CLA.71, BCR.79
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:L.150, C:L.157, C:I.206, C:I.222, C:I.222, C:A.260, C:M.264, C:I.267, C:I.267, C:F.271, C:V.278
- Metal complexes: C:H.219
CLA.66: 22 residues within 4Å:- Chain C: W.45, I.69, L.70, H.73, G.153, L.156, K.160, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.65, CLA.67, CLA.68, CLA.74, CLA.76
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:W.45, C:W.45, C:I.69, C:L.70, C:K.160, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.67: 17 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, L.77, V.96, H.100
- Ligands: CLA.65, CLA.66, CLA.71, CLA.73, CLA.74, CLA.76, CLA.77, LMG.93
8 PLIP interactions:8 interactions with chain C,- Hydrophobic interactions: C:I.42, C:V.43, C:A.46, C:H.73, C:L.77, C:V.96
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.68: 20 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, S.411, H.412, V.414, F.418
- Chain J: P.17, V.21
- Ligands: CLA.66, CLA.72, CLA.74, DGD.81, DGD.82, LMG.83, LHG.115
10 PLIP interactions:8 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:W.45, C:F.52, C:I.69, C:W.407, C:W.407, C:V.414, C:F.418, C:F.418, J:V.21
- Metal complexes: H2O.21
CLA.69: 24 residues within 4Å:- Chain A: F.23, L.111, S.114, C.115, M.117, G.118, W.121
- Chain C: F.246, S.255, Y.256, G.259, A.260, H.423, L.424, A.427, R.431
- Chain H: V.16, F.19, F.23
- Ligands: CLA.12, CLA.71, BCR.79, DGD.80, LMG.129
16 PLIP interactions:6 interactions with chain A, 3 interactions with chain H, 7 interactions with chain C,- Hydrophobic interactions: A:F.23, A:L.111, A:W.121, A:W.121, A:W.121, A:W.121, H:V.16, H:F.19, H:F.23, C:Y.256, C:Y.256, C:L.424
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
CLA.70: 19 residues within 4Å:- Chain C: L.143, L.147, L.195, I.225, C.226, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, F.246
- Ligands: CLA.12, CLA.65, CLA.71, BCR.79, LMT.84
8 PLIP interactions:8 interactions with chain C,- Hydrophobic interactions: C:L.147, C:L.147, C:L.195, C:W.232, C:W.241
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.71: 23 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, I.222, C.226, W.241, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.65, CLA.67, CLA.69, CLA.70, CLA.73, BCR.79
17 PLIP interactions:16 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.150, C:I.222, C:W.241, C:F.246, C:W.248, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:A.260, C:L.261
- Hydrogen bonds: C:H.146
- Salt bridges: C:H.146
- Metal complexes: H2O.15
CLA.72: 23 residues within 4Å:- Chain C: W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, V.421, G.422, W.425, H.426, R.429
- Ligands: SQD.14, CLA.68, CLA.73, CLA.74, CLA.75, DGD.81, LMG.83, LHG.115
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.254, C:L.254, C:L.258, C:F.419, C:F.419, C:V.421, C:W.425
- Hydrogen bonds: C:N.21, C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.73: 24 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, I.142, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.67, CLA.71, CLA.72, CLA.74, CLA.75, CLA.76
13 PLIP interactions:13 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:I.25, C:L.31, C:A.34, C:H.38, C:W.133, C:I.142, C:L.150, C:Y.253, C:L.254
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.74: 18 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, V.21, F.23, L.24
- Ligands: CLA.66, CLA.67, CLA.68, CLA.72, CLA.73, CLA.75
14 PLIP interactions:10 interactions with chain C, 4 interactions with chain J,- Hydrophobic interactions: C:L.41, C:I.42, C:W.45, C:W.45, C:L.261, C:F.418, C:F.419, C:F.419, J:P.20, J:V.21, J:F.23, J:L.24
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.75: 35 residues within 4Å:- Chain C: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, L.41, A.105, G.108, F.109, A.115, I.116
- Chain J: F.23, L.24, A.27, F.28, W.30, Q.31
- Chain P: I.18, I.19, L.22, N.28, L.29
- Chain R: M.19, V.20, V.23, P.24, A.28
- Ligands: CLA.72, CLA.73, CLA.74, BCR.138
24 PLIP interactions:9 interactions with chain J, 3 interactions with chain P, 4 interactions with chain R, 8 interactions with chain C,- Hydrophobic interactions: J:F.23, J:F.23, J:L.24, J:A.27, J:F.28, J:W.30, J:Q.31, P:I.18, P:I.19, P:L.29, R:V.20, R:V.23, R:P.24, R:A.28, C:L.24, C:L.24, C:L.41, C:A.115, C:I.116, C:I.116
- pi-Stacking: J:W.30, J:W.30
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
CLA.76: 20 residues within 4Å:- Chain C: L.32, H.35, V.36, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, I.152, G.153
- Ligands: CLA.66, CLA.67, CLA.73, CLA.77, BCR.78
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:L.32, C:H.35, C:F.128, C:Y.131, C:I.142, C:I.142, C:F.145, C:F.145, C:F.145, C:I.148, C:V.149, C:V.149, C:I.152
- Water bridges: C:A.39
- Metal complexes: C:H.146
CLA.77: 17 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.67, CLA.76, BCR.78, LMG.93, LMT.94, UNL.95
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.106, C:L.107, C:Y.113, C:L.122, C:Y.125, C:F.129, C:F.129, C:F.129
- Salt bridges: C:H.114
- Metal complexes: C:H.114
CLA.109: 27 residues within 4Å:- Chain A: M.173
- Chain D: L.35, W.38, L.112, P.139, V.142, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.7, CLA.8, CLA.9, PHO.11
16 PLIP interactions:16 interactions with chain D,- Hydrophobic interactions: D:L.35, D:W.38, D:L.112, D:V.142, D:F.171, D:F.175, D:Q.176, D:W.181, D:T.182, D:V.191, D:V.194, D:V.194, D:L.195, D:L.269
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.110: 31 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, G.99, T.102, F.103, L.106, H.107
- Chain G: L.38
- Chain Q: F.10, G.12, L.13, L.14, G.16, A.17, V.19
- Ligands: PL9.15, CLA.34, BCR.111, DGD.113, LMG.116, UNL.117, UNL.176
18 PLIP interactions:1 interactions with chain G, 10 interactions with chain D, 7 interactions with chain Q,- Hydrophobic interactions: G:L.38, D:L.26, D:P.29, D:L.33, D:W.83, D:W.83, D:L.106, Q:F.10, Q:F.10, Q:L.13, Q:L.13, Q:L.14, Q:A.17, Q:V.19
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
- 2 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.10: 28 residues within 4Å:- Chain A: L.31, A.34, T.35, F.38, I.105, Y.116, Q.120, A.136, Y.137, P.140, F.148, M.162, G.165, I.166, V.195, P.269, V.270, V.273
- Chain D: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.7, CLA.8, LHG.114
17 PLIP interactions:14 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: A:L.31, A:A.34, A:F.38, A:I.105, A:A.136, A:Y.137, A:Y.137, A:P.140, A:F.148, A:V.195, A:P.269, A:V.273, D:L.195, D:A.198, D:A.202
- Hydrogen bonds: A:Y.116, A:Q.120
PHO.11: 32 residues within 4Å:- Chain A: F.196, A.199, L.200, A.203, M.204, F.245, L.248, I.249
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.9, PL9.15, CLA.109
23 PLIP interactions:21 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.31, D:A.34, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:P.139, D:F.143, D:V.165, D:P.265, D:V.266, D:L.269, A:F.196, A:A.203
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136, D:F.136
- 9 x BCR: BETA-CAROTENE(Non-covalent)
BCR.13: 19 residues within 4Å:- Chain A: F.7, V.25, I.28, L.32, A.33, I.36, C.37, I.40, A.41, A.44, A.45, I.86, W.95, L.96, P.101
- Chain H: F.15, L.18
- Ligands: CLA.12, LHG.16
16 PLIP interactions:13 interactions with chain A, 3 interactions with chain H- Hydrophobic interactions: A:F.7, A:V.25, A:I.28, A:L.32, A:I.36, A:I.36, A:I.40, A:A.41, A:I.86, A:W.95, A:W.95, A:L.96, A:P.101, H:F.15, H:F.15, H:L.18
BCR.43: 8 residues within 4Å:- Chain B: M.24, L.28, F.107, W.114
- Ligands: CLA.39, CLA.40, SQD.46, HTG.145
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:M.24, B:L.28, B:F.107, B:W.114, B:W.114, B:W.114
BCR.44: 10 residues within 4Å:- Chain B: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: CLA.39
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.28, B:I.100, B:L.108
BCR.45: 13 residues within 4Å:- Chain B: L.102, L.105, L.106, L.108, A.109, W.112, V.115, Y.116
- Ligands: CLA.31, CLA.32, CLA.41, CLA.42, UNL.50
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.102, B:L.106, B:W.112, B:V.115, B:V.115, B:Y.116
BCR.78: 16 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Chain J: Y.6
- Chain R: V.51, G.55, N.58, F.59
- Ligands: CLA.76, CLA.77, LMG.93, UNL.95
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain R- Hydrophobic interactions: C:F.94, C:V.98, C:I.102, C:V.106, C:V.106, C:L.107, C:F.129, C:F.129, R:N.58, R:F.59
BCR.79: 18 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23
- Ligands: CLA.12, CLA.65, CLA.69, CLA.70, CLA.71
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain H- Hydrophobic interactions: C:F.192, C:Y.194, C:L.195, C:L.195, C:I.206, C:V.209, C:I.222, C:F.246, H:F.23
BCR.111: 18 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, F.103
- Chain F: P.17, T.18, F.21, L.22, I.25
- Chain I: V.21, V.25
- Ligands: CLA.110, DGD.113, LMG.135
11 PLIP interactions:1 interactions with chain I, 5 interactions with chain F, 5 interactions with chain D- Hydrophobic interactions: I:V.25, F:P.17, F:T.18, F:F.21, F:F.21, F:I.25, D:Y.32, D:L.39, D:F.91, D:F.103, D:F.103
BCR.138: 21 residues within 4Å:- Chain C: A.37, G.40, L.41, L.51, F.94, V.98, L.101, I.102, S.104, A.105, G.108
- Chain J: Y.6, F.23, L.26, W.30
- Chain R: L.9, S.16, V.20, W.47
- Ligands: CLA.75, BCR.175
16 PLIP interactions:7 interactions with chain C, 3 interactions with chain R, 6 interactions with chain J- Hydrophobic interactions: C:A.37, C:L.41, C:L.51, C:F.94, C:V.98, C:L.101, C:A.105, R:L.9, R:V.20, R:W.47, J:Y.6, J:F.23, J:F.23, J:F.23, J:L.26, J:W.30
BCR.175: 22 residues within 4Å:- Chain C: F.44
- Chain I: A.14, T.15, G.18, M.19
- Chain J: L.12, L.16, I.19, L.22, F.23, A.25, F.28, V.29
- Chain P: I.11, G.12, G.15, P.16
- Chain R: V.13, S.16, F.17
- Ligands: SQD.14, BCR.138
11 PLIP interactions:2 interactions with chain P, 7 interactions with chain J, 1 interactions with chain C, 1 interactions with chain R- Hydrophobic interactions: P:I.11, P:P.16, J:L.12, J:L.16, J:I.19, J:L.22, J:F.23, J:A.25, J:V.29, C:F.44, R:V.13
- 5 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.14: 22 residues within 4Å:- Chain A: L.190, A.193, G.194, F.255, N.257, S.260, F.263, A.267, W.268, V.271, G.272
- Chain C: Q.10, A.16, W.17, W.18
- Chain D: F.222, R.223
- Chain J: F.28
- Ligands: CLA.72, LHG.108, LHG.115, BCR.175
16 PLIP interactions:2 interactions with chain C, 11 interactions with chain A, 1 interactions with chain D, 2 interactions with chain J- Hydrophobic interactions: C:W.17, A:A.193, A:F.255, A:A.267, A:W.268, A:W.268, A:W.268, A:V.271, J:F.28, J:F.28
- Hydrogen bonds: C:Q.10, A:N.257, A:S.260
- Water bridges: A:N.256, A:N.257
- Salt bridges: D:R.223
SQD.18: 12 residues within 4Å:- Chain A: W.10, N.16, R.17, L.18, V.20, I.28, L.31, L.32, T.35
- Chain M: F.22
- Ligands: CLA.8, LHG.114
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain M- Hydrophobic interactions: A:V.20, A:I.28, A:L.31, A:L.32, M:F.22
- Hydrogen bonds: A:N.16, A:R.17, A:L.18
SQD.46: 7 residues within 4Å:- Chain B: R.17, W.114
- Chain K: N.2, R.5
- Ligands: CLA.40, BCR.43, HTG.145
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain K- Water bridges: B:R.17, B:R.17, B:R.17
- Salt bridges: B:R.17, K:R.5
SQD.124: 9 residues within 4Å:- Chain D: W.11, R.16
- Chain F: F.4, T.5, V.6, V.9
- Chain Q: I.30, D.34
- Ligands: PL9.15
4 PLIP interactions:2 interactions with chain Q, 1 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: Q:D.34, Q:D.34, F:V.6
- Salt bridges: D:R.16
SQD.140: 10 residues within 4Å:- Chain K: R.12, Y.16, L.19
- Chain M: F.8, C.12, L.16, F.19, F.23, R.24, P.26
8 PLIP interactions:6 interactions with chain K, 2 interactions with chain M- Hydrophobic interactions: K:Y.16, K:L.19, M:F.8, M:F.19
- Hydrogen bonds: K:R.12, K:R.12
- Salt bridges: K:R.12, K:R.12
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.15: 25 residues within 4Å:- Chain A: F.201, M.204, H.205, L.208, V.209, A.241, H.242, F.245, I.249, A.253, S.254, F.255, L.261
- Chain D: V.20, F.28, P.29, Y.32, L.35
- Chain F: A.10, T.13
- Chain Q: T.23
- Ligands: CLA.9, PHO.11, CLA.110, SQD.124
17 PLIP interactions:8 interactions with chain A, 7 interactions with chain D, 1 interactions with chain F, 1 interactions with chain Q- Hydrophobic interactions: A:F.201, A:L.208, A:L.208, A:V.209, A:F.245, A:L.261, A:L.261, D:V.20, D:F.28, D:F.28, D:F.28, D:P.29, D:Y.32, D:L.35, F:A.10, Q:T.23
- Hydrogen bonds: A:F.255
PL9.112: 33 residues within 4Å:- Chain A: F.42, I.43, I.67, I.166
- Chain D: M.188, M.189, A.192, G.193, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, T.267, G.268
- Chain K: L.21, V.24, L.25, L.27, L.28
- Chain M: F.10
- Ligands: CLA.8, LHG.114, LHG.141
25 PLIP interactions:5 interactions with chain A, 13 interactions with chain D, 3 interactions with chain K, 4 interactions with chain M- Hydrophobic interactions: A:F.42, A:F.42, A:I.43, A:I.67, A:I.166, D:M.189, D:A.192, D:I.203, D:T.207, D:W.243, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, D:T.267, K:L.21, K:L.25, K:L.27, M:F.10, M:F.10, M:F.10, M:F.10
- Hydrogen bonds: D:F.251
- pi-Stacking: D:F.251
- 6 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.16: 14 residues within 4Å:- Chain A: L.3, W.4, R.6, F.7, N.9, W.10, S.13, D.15
- Chain H: F.14, L.18
- Ligands: CLA.12, BCR.13, UNL.131, UNL.133
13 PLIP interactions:11 interactions with chain A, 2 interactions with chain H- Hydrophobic interactions: A:W.4, A:F.7, A:F.7, A:W.10, H:F.14, H:L.18
- Hydrogen bonds: A:W.10, A:S.13, A:D.15
- Water bridges: A:N.9, A:N.9, A:S.13
- Salt bridges: A:R.6
LHG.23: 18 residues within 4Å:- Chain A: N.224
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467
- Chain D: Y.131, W.256, F.259, L.262, F.263, T.267, M.271
- Ligands: CLA.33, CLA.37, CLA.39, LHG.141
14 PLIP interactions:9 interactions with chain B, 2 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: B:W.4, B:Y.5, B:L.460, B:F.463, B:F.463, D:F.263, D:F.263, D:T.267
- Hydrogen bonds: B:Y.5, A:N.224, A:N.224
- Water bridges: B:R.6, B:R.6
- Salt bridges: B:R.6
LHG.108: 6 residues within 4Å:- Chain C: W.17
- Chain D: R.223
- Chain J: G.35, F.36
- Ligands: SQD.14, LHG.115
4 PLIP interactions:1 interactions with chain D, 2 interactions with chain J, 1 interactions with chain C- Salt bridges: D:R.223
- Hydrophobic interactions: J:F.36, J:F.36, C:W.17
LHG.114: 28 residues within 4Å:- Chain A: M.27, N.224
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.11, T.13, S.14, Y.16, L.17, V.24, L.27
- Chain M: F.10, F.17, A.20, I.21
- Ligands: CLA.7, CLA.8, PHO.10, SQD.18, PL9.112, LHG.141
22 PLIP interactions:8 interactions with chain D, 7 interactions with chain K, 6 interactions with chain M, 1 interactions with chain A- Hydrophobic interactions: D:F.247, D:F.251, D:F.251, D:F.260, D:F.260, K:Y.16, K:L.17, K:V.24, K:L.27, M:F.10, M:F.17, M:F.17, M:F.17, M:A.20, M:I.21
- Hydrogen bonds: D:S.252, D:S.252, D:N.253, K:N.11, K:S.14, A:N.224
- Water bridges: K:T.13
LHG.115: 20 residues within 4Å:- Chain A: R.130, W.132, A.136, F.263, A.266, W.274
- Chain C: W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.14, CLA.68, CLA.72, DGD.82, LHG.108
15 PLIP interactions:7 interactions with chain A, 4 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: A:W.132, A:A.136, A:F.263, A:W.274, C:W.18, C:W.18
- Water bridges: A:R.130, A:R.130
- Salt bridges: A:R.130
- Hydrogen bonds: C:R.429, C:R.429, D:N.210, D:A.219, D:S.220, D:T.221
LHG.141: 22 residues within 4Å:- Chain A: S.222, N.224
- Chain B: P.3, W.4, Y.5
- Chain D: A.192, W.256, F.259, F.263
- Chain K: E.9, L.10, N.11, S.14, L.17, G.18, L.20, V.24
- Ligands: CLA.8, LHG.23, CLA.40, PL9.112, LHG.114
15 PLIP interactions:4 interactions with chain D, 3 interactions with chain A, 2 interactions with chain B, 6 interactions with chain K- Hydrophobic interactions: D:A.192, D:F.259, D:F.263, D:F.263, B:W.4, K:L.20, K:V.24
- Hydrogen bonds: A:S.222, A:S.222, A:N.224, B:W.4, K:E.9, K:E.9, K:N.11, K:S.14
- 14 x UNL: UNKNOWN LIGAND(Non-functional Binders)
UNL.17: 1 residues within 4Å:- Chain A: W.4
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.4, A:W.4, A:W.4
UNL.20: 1 residues within 4Å:- Ligands: LMT.19
No protein-ligand interaction detected (PLIP)UNL.50: 5 residues within 4Å:- Chain B: W.90, L.148
- Ligands: CLA.31, CLA.32, BCR.45
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.148
UNL.53: 4 residues within 4Å:- Chain B: F.155, L.160, F.161
- Ligands: CLA.32
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.155, B:F.161, B:F.161
UNL.95: 3 residues within 4Å:- Chain C: Y.125
- Ligands: CLA.77, BCR.78
No protein-ligand interaction detected (PLIP)UNL.117: 10 residues within 4Å:- Chain D: W.22, L.26, L.117, F.120, E.121, R.124
- Chain Q: L.20
- Ligands: CLA.34, CLA.110, LMG.116
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain Q- Hydrophobic interactions: D:L.26, D:L.117, D:L.117, D:F.120, D:R.124, Q:L.20
UNL.130: 5 residues within 4Å:- Chain A: A.90
- Chain H: M.1, L.4
- Ligands: CLA.12, UNL.131
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:L.4, H:L.4
UNL.131: 7 residues within 4Å:- Chain H: M.1, E.2, T.3, L.4
- Ligands: LHG.16, UNL.130, UNL.133
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:T.3, H:L.4
UNL.132: 5 residues within 4Å:- Chain H: T.3, T.7, I.10, F.14
- Ligands: UNL.133
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:I.10, H:F.14, H:F.14
UNL.133: 3 residues within 4Å:- Ligands: LHG.16, UNL.131, UNL.132
No protein-ligand interaction detected (PLIP)UNL.137: 6 residues within 4Å:- Chain I: V.25, G.26, Y.30, Y.33
- Ligands: DGD.81, LMG.83
4 PLIP interactions:4 interactions with chain I- Hydrophobic interactions: I:V.25, I:Y.30, I:Y.33, I:Y.33
UNL.155: 4 residues within 4Å:- Chain M: I.14, F.18, I.21
- Ligands: LMT.154
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:F.18, M:I.21
UNL.159: 7 residues within 4Å:- Chain N: N.21, P.47, Y.48, E.49, V.77, T.78, E.79
3 PLIP interactions:3 interactions with chain N- Hydrophobic interactions: N:P.47, N:V.77, N:E.79
UNL.176: 7 residues within 4Å:- Chain D: W.83, G.89
- Chain Q: I.11, S.15, G.16, L.20
- Ligands: CLA.110
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain Q- Hydrophobic interactions: D:W.83, D:W.83, Q:L.20
- 5 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.19: 9 residues within 4Å:- Chain A: I.43, A.44, L.62, Y.63, G.64
- Chain D: R.294
- Ligands: UNL.20, DMS.24, LMT.154
6 PLIP interactions:1 interactions with chain L, 3 interactions with chain A, 2 interactions with chain D- Water bridges: L:G.109
- Hydrophobic interactions: A:I.43, A:A.44, A:L.62
- Hydrogen bonds: D:R.294, D:R.294
LMT.84: 10 residues within 4Å:- Chain A: N.2, W.4, E.5
- Chain C: W.241, R.244
- Chain H: L.24, S.25, G.26, R.30
- Ligands: CLA.70
6 PLIP interactions:2 interactions with chain A, 1 interactions with chain H, 3 interactions with chain C- Hydrogen bonds: A:N.2, A:W.4, H:R.30, C:R.244, C:R.244
- Hydrophobic interactions: C:W.241
LMT.94: 11 residues within 4Å:- Chain C: F.109, Y.113, R.117
- Chain R: Y.27, W.33, K.37, I.40, F.41, S.44, W.47
- Ligands: CLA.77
9 PLIP interactions:4 interactions with chain C, 5 interactions with chain R- Hydrophobic interactions: C:F.109, C:F.109, C:F.109, R:I.40, R:W.47, R:W.47
- Water bridges: C:R.117
- Hydrogen bonds: R:Y.27
- Salt bridges: R:K.37
LMT.125: 4 residues within 4Å:- Chain E: W.31, S.35
- Chain F: A.27, F.30
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:W.31, E:W.31, F:F.30
LMT.154: 5 residues within 4Å:- Chain A: L.62
- Chain M: M.1
- Ligands: LMT.19, UNL.155, DMS.156
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.62
- 1 x BCT: BICARBONATE ION(Non-functional Binders)
- 3 x CA: CALCIUM ION(Non-covalent)
CA.26: 1 residues within 4Å:- Chain B: N.437
No protein-ligand interaction detected (PLIP)CA.64: 5 residues within 4Å:- Chain C: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:F.4, C:T.6, C:E.11, C:S.12, H2O.21
CA.146: 3 residues within 4Å:- Chain L: T.135, N.197, V.198
5 PLIP interactions:2 interactions with chain L, 3 Ligand-Water interactions- Metal complexes: L:T.135, L:V.198, H2O.32, H2O.33, H2O.34
- 6 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.47: 13 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, F.452, A.453, V.456
- Chain K: F.33
- Ligands: CLA.33, CLA.39, DMS.142, DMS.143
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:F.452, B:A.453, B:V.456
- Hydrogen bonds: B:Y.39, B:T.326, B:T.326
- Water bridges: B:T.326, B:T.326
LMG.83: 14 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.22
- Chain J: D.14, V.15, V.18, V.21
- Chain P: Q.4
- Ligands: CLA.68, CLA.72, DGD.81, DMS.99, UNL.137
5 PLIP interactions:3 interactions with chain J, 2 interactions with chain C- Hydrophobic interactions: J:V.15, J:V.18, J:V.21
- Hydrogen bonds: C:H.56
- Salt bridges: C:H.56
LMG.93: 15 residues within 4Å:- Chain C: V.43, W.79, D.89, F.91, P.92, V.95, V.96, V.99, H.100, S.103
- Chain R: F.59
- Ligands: CLA.67, CLA.77, BCR.78, HTG.85
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:V.43, C:W.79, C:P.92, C:V.95, C:V.99
- Hydrogen bonds: C:D.89
- Water bridges: C:D.89
LMG.116: 16 residues within 4Å:- Chain B: A.227, L.473
- Chain D: K.13, W.22, R.124, L.125
- Chain G: A.31, M.34, G.35, L.38
- Chain Q: L.20, F.24
- Ligands: CLA.34, CLA.35, CLA.110, UNL.117
12 PLIP interactions:3 interactions with chain Q, 8 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: Q:L.20, Q:F.24, Q:F.24, D:W.22, D:W.22, D:W.22
- Hydrogen bonds: D:K.13, D:K.13, D:R.124
- Water bridges: D:R.124
- Salt bridges: D:K.13, B:R.229
LMG.129: 21 residues within 4Å:- Chain A: F.83, W.87, E.88, F.107, L.111, F.145
- Chain C: L.195, L.196, K.197, S.198, F.200, E.203, W.205, F.266
- Chain H: K.5, Y.9
- Ligands: CLA.12, DMS.21, CLA.69, DGD.80, DMS.100
18 PLIP interactions:7 interactions with chain C, 4 interactions with chain H, 7 interactions with chain A- Hydrophobic interactions: C:F.200, C:W.205, C:F.266, C:F.266, A:F.83, A:F.107, A:L.111, A:L.111, A:F.145, A:F.145
- Hydrogen bonds: C:S.198, C:E.203, C:E.203, H:K.5, H:K.5, H:Y.9, H:Y.9, A:W.87
LMG.135: 21 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: A.15, T.18, I.25, M.28, Q.29
- Chain I: F.28, F.29, G.31, A.32, L.36, G.37
- Ligands: CLA.9, DGD.82, BCR.111, MG.136
15 PLIP interactions:4 interactions with chain I, 9 interactions with chain D, 2 interactions with chain F- Hydrophobic interactions: I:F.29, D:L.39, D:F.63, D:F.63, D:F.63, D:F.63, D:F.63
- Hydrogen bonds: I:G.31, D:G.60, D:F.63, F:M.28, F:Q.29
- Water bridges: I:F.28, I:G.37, D:N.62
- 8 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.48: 7 residues within 4Å:- Chain B: L.41, S.73, S.75, W.77, E.93, L.97
- Ligands: DMS.58
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:E.93, B:L.97
- Hydrogen bonds: B:S.73, B:S.75, B:E.93, B:E.93
- Water bridges: B:L.41
HTG.49: 3 residues within 4Å:- Chain B: W.184
- Ligands: CLA.27, DMS.62
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:W.184, B:W.184
HTG.51: 6 residues within 4Å:- Chain B: W.74, D.86, G.88, F.89, L.97
- Ligands: HTG.52
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.74, B:L.97
- Hydrogen bonds: B:D.86
HTG.52: 5 residues within 4Å:- Chain B: D.86, G.88, F.89
- Ligands: CLA.32, HTG.51
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.89, B:F.89
- Hydrogen bonds: B:F.89
- Water bridges: B:W.90
HTG.57: 10 residues within 4Å:- Chain B: E.386, K.388
- Chain D: E.333
- Chain N: A.27, Q.30
- Chain O: R.55, D.128, Y.136
- Ligands: DMS.55, DMS.174
6 PLIP interactions:4 interactions with chain O, 1 interactions with chain B, 1 interactions with chain N- Hydrogen bonds: O:R.55, O:D.128, O:Y.136, B:K.388
- Water bridges: O:R.55
- Hydrophobic interactions: N:A.27
HTG.85: 5 residues within 4Å:- Chain C: W.79, F.163, F.164, G.165
- Ligands: LMG.93
No protein-ligand interaction detected (PLIP)HTG.145: 6 residues within 4Å:- Chain B: W.114
- Chain K: R.5, P.7
- Ligands: CLA.40, BCR.43, SQD.46
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:R.5
HTG.166: 9 residues within 4Å:- Chain O: N.13, S.14, E.15, P.64, P.65, N.68, E.70, G.71, D.74
7 PLIP interactions:7 interactions with chain O- Hydrogen bonds: O:S.14, O:S.14, O:E.15, O:P.65, O:N.68, O:E.70, O:D.74
- 5 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.80: 30 residues within 4Å:- Chain A: L.81, S.138, L.141, A.142, F.145, I.150, I.153
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.69, LMG.129
23 PLIP interactions:7 interactions with chain A, 16 interactions with chain C- Hydrophobic interactions: A:L.141, A:A.142, A:F.145, A:F.145, A:F.145, A:I.150, A:I.153, C:P.199, C:F.200, C:W.205, C:F.266, C:L.420
- Hydrogen bonds: C:G.202, C:E.203, C:N.276, C:T.277, C:T.277, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200, C:D.342, C:D.342
DGD.81: 21 residues within 4Å:- Chain A: H.185, F.187, L.287
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411
- Chain I: F.29, Y.33
- Ligands: CLA.68, CLA.72, DGD.82, LMG.83, UNL.137
15 PLIP interactions:1 interactions with chain I, 11 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: I:F.29, C:L.386, C:W.407, A:F.187, A:F.187, A:L.287
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402, C:W.407
- Water bridges: C:Y.64, C:E.65, C:G.67
DGD.82: 31 residues within 4Å:- Chain A: P.186, Q.189, L.190, A.193, W.268, F.290, N.291, F.292, S.295
- Chain C: L.386, N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain D: N.62, L.64
- Chain I: F.29, A.32, Y.33, G.37, S.38, S.39
- Chain O: Q.34
- Ligands: CLA.9, CLA.68, DGD.81, LHG.115, LMG.135
21 PLIP interactions:3 interactions with chain I, 7 interactions with chain C, 8 interactions with chain A, 1 interactions with chain O, 2 interactions with chain D- Hydrophobic interactions: I:F.29, C:L.386, A:P.186, A:Q.189, A:L.190, A:L.190, A:A.193, A:W.268, A:F.290, D:L.64, D:L.64
- Hydrogen bonds: I:G.37, C:N.387, C:N.397, C:S.398, C:S.398, C:V.399, A:S.295, O:Q.34
- Water bridges: I:G.37, C:N.400
DGD.113: 7 residues within 4Å:- Chain D: G.89, F.91, T.92
- Chain E: F.33, D.41
- Ligands: CLA.110, BCR.111
5 PLIP interactions:1 interactions with chain E, 4 interactions with chain D- Hydrophobic interactions: E:F.33, D:F.91, D:F.91, D:F.91, D:F.91
DGD.128: 27 residues within 4Å:- Chain B: Y.192, F.249, G.253, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain D: G.76, H.77, I.113, V.144, I.149, L.152, G.153, S.155, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.28
26 PLIP interactions:10 interactions with chain B, 5 interactions with chain G, 11 interactions with chain D- Hydrophobic interactions: B:F.249, B:Y.257, B:T.451, B:A.455, B:F.462, G:Y.48, G:Y.48, D:I.113, D:V.144, D:I.149, D:L.152, D:L.152, D:L.281
- Hydrogen bonds: B:Y.192, B:Y.192, B:S.276, B:S.276, G:N.49, G:V.59, G:S.60, D:H.77, D:H.77, D:S.155
- Water bridges: B:T.270, D:G.76, D:H.77
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.123: 15 residues within 4Å:- Chain E: F.6, I.9, R.14, Y.15, I.18, H.19, T.22, I.23, L.26
- Chain F: R.7, W.8, V.11, H.12, A.15, I.19
14 PLIP interactions:7 interactions with chain F, 7 interactions with chain E,- Hydrophobic interactions: F:V.11, F:A.15, F:I.19, E:I.9, E:T.22, E:I.23
- Salt bridges: F:R.7, E:R.14
- pi-Stacking: F:W.8, F:W.8, E:Y.15
- Metal complexes: F:H.12, E:H.19
- Water bridges: E:R.4
- 1 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
RRX.127: 16 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43
- Chain Q: T.1, L.6, F.10
- Ligands: CLA.27, CLA.28, CLA.29, CLA.35, CLA.36
8 PLIP interactions:6 interactions with chain G, 2 interactions with chain Q- Hydrophobic interactions: G:L.36, G:F.37, G:F.37, G:V.39, G:F.40, G:I.43, Q:L.6, Q:F.10
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.136: 5 residues within 4Å:- Chain I: G.31, A.34, G.35, L.36
- Ligands: LMG.135
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.31, I:A.34, I:L.36, H2O.28
MG.139: 3 residues within 4Å:- Chain J: D.10, D.14
- Chain P: Q.4
5 PLIP interactions:2 interactions with chain J, 3 Ligand-Water interactions- Metal complexes: J:D.10, J:D.14, H2O.30, H2O.30, H2O.30
- 1 x HEC: HEME C(Covalent)
HEC.165: 26 residues within 4Å:- Chain C: A.375
- Chain O: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
18 PLIP interactions:17 interactions with chain O, 1 interactions with chain C,- Hydrophobic interactions: O:A.36, O:N.49, O:L.52, O:L.54, O:L.59, O:L.72, O:Y.75, O:I.88, O:P.93, O:I.115, O:I.119, C:A.375
- Hydrogen bonds: O:D.53, O:Y.82
- Water bridges: O:N.49
- pi-Stacking: O:Y.75
- Metal complexes: O:H.41, O:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Uto, S. et al., Mutual relationships between structural and functional changes in a PsbM-deletion mutant of photosystem II. Faraday Discuss. (2017)
- Release Date
- 2017-03-22
- Peptides
- Photosystem II protein D1 1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II manganese-stabilizing polypeptide: L
Photosystem II reaction center protein T: M
Photosystem II 12 kDa extrinsic protein: N
Cytochrome c-550: O
Photosystem II reaction center protein Ycf12: P
Photosystem II reaction center X protein: Q
Photosystem II reaction center protein Z: R - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
aB
bC
cD
dE
eF
fG
hH
iI
jJ
kK
lL
oM
tN
uO
vP
yQ
xR
z - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 5h2f.2 (1 other biounit)
Crystal structure of the PsbM-deletion mutant of photosystem II
Photosystem II protein D1 1
Photosystem II CP47 reaction center protein
Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I
Photosystem II reaction center protein J
Photosystem II reaction center protein K
Photosystem II reaction center protein L
Photosystem II manganese-stabilizing polypeptide
Photosystem II reaction center protein T
Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Photosystem II reaction center protein Ycf12
Photosystem II reaction center X protein
Photosystem II reaction center protein Z
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1izl.1 | 1mz4.1 | 1s5l.1 | 1s5l.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 | 5b66.1 | 5e79.1 more...less...5e7c.1 | 5gth.1 | 5gth.2 | 5gti.1 | 5gti.2 | 5h2f.1 | 5kaf.1 | 5kai.1 | 5mx2.1 | 5mx2.2 | 5tis.1 | 5v2c.1 | 5ws5.1 | 5ws5.2 | 5ws6.1 | 5ws6.2 | 5zzn.1 | 5zzn.2 | 6dhe.1 | 6dhf.1 | 6dhg.1 | 6dhh.1 | 6dho.1 | 6dhp.1 | 6jlj.1 | 6jlk.1 | 6jll.1 | 6jlm.1 | 6jln.1 | 6jlo.1 | 6jlp.1 | 6w1o.1 | 6w1p.1 | 6w1q.1 | 6w1r.1 | 6w1t.1 | 6w1u.1 | 6w1v.1 | 7cji.1 | 7cjj.1 | 7cou.1 | 7czl.1 | 7d1t.1 | 7d1u.1 | 7dxa.1 | 7dxh.1 | 7eda.1 | 7nho.1 | 7nhp.1 | 7nhq.1 | 7rf1.1 | 7rf2.1 | 7rf3.1 | 7rf4.1 | 7rf5.1 | 7rf6.1 | 7rf7.1 | 7rf8.1 | 7yq2.1 | 7yq7.1 | 8ez5.1 | 8f4c.1 | 8f4d.1 | 8f4e.1 | 8f4f.1 | 8f4g.1 | 8f4h.1 | 8f4i.1 | 8f4j.1 | 8f4k.1 | 8gn0.1 | 8gn1.1 | 8gn2.1 | 8ir5.1 | 8ir6.1 | 8ir7.1 | 8ir8.1 | 8ir9.1 | 8ira.1 | 8irb.1 | 8irc.1 | 8ird.1 | 8ire.1 | 8irf.1 | 8irg.1 | 8irh.1 | 8iri.1 | 9evx.1