- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 7 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 5 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.2: 14 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, V.30, I.38, T.45
- Chain N: F.22
- Ligands: PHO.8, BCR.10, UNL.14, CLA.80, UNL.101, BCR.114
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:N.26, A:V.30, A:I.38, A:I.38
- Hydrogen bonds: A:N.26, A:L.28
- Water bridges: A:R.27, A:R.27
SQD.11: 23 residues within 4Å:- Chain A: L.200, A.203, G.204, F.265, N.267, S.270, F.273, F.274, A.277, W.278, V.281, G.282
- Chain C: Q.10, A.16, W.17, W.18
- Chain D: F.222, R.223
- Chain J: A.25, F.28
- Ligands: CLA.62, LHG.89, UNL.105
22 PLIP interactions:13 interactions with chain A, 3 interactions with chain C, 3 interactions with chain J, 3 interactions with chain D- Hydrophobic interactions: A:L.200, A:A.203, A:F.265, A:F.274, A:A.277, A:W.278, A:W.278, A:W.278, A:V.281, C:W.17, C:W.18, J:A.25, J:F.28, J:F.28
- Hydrogen bonds: A:N.267, A:S.270, C:Q.10
- Water bridges: A:N.266, A:N.267, D:R.223, D:R.223
- Salt bridges: D:R.223
SQD.19: 6 residues within 4Å:- Chain B: R.17, S.103, W.114
- Chain K: R.7
- Ligands: CLA.37, BCR.40
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain K- Water bridges: B:R.17, B:R.17, K:N.4
- Salt bridges: B:R.17, K:R.7
SQD.95: 16 residues within 4Å:- Chain D: W.11, R.14, R.16
- Chain F: P.13, I.14, F.15, T.16, V.17, V.20
- Chain R: T.23, V.26, L.27, I.30, D.34
- Ligands: PL9.16, DGD.86
6 PLIP interactions:2 interactions with chain R, 2 interactions with chain F, 2 interactions with chain D- Hydrophobic interactions: R:L.27, R:I.30
- Hydrogen bonds: F:F.15, F:V.17, D:R.14
- Salt bridges: D:R.16
SQD.108: 11 residues within 4Å:- Chain K: R.14, Y.18
- Chain L: V.15, L.16, Y.26
- Chain N: C.12, A.15, L.16, F.19, F.23
- Ligands: UNL.110
10 PLIP interactions:4 interactions with chain N, 3 interactions with chain L, 3 interactions with chain K- Hydrophobic interactions: N:A.15, N:L.16, N:F.19, L:V.15, L:L.16
- Hydrogen bonds: N:F.23, L:Y.26, K:R.14, K:R.14
- Salt bridges: K:R.14
- 1 x FE2: FE (II) ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 35 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.6: 29 residues within 4Å:- Chain A: F.119, Y.147, P.150, L.151, S.153, V.157, F.182, M.183, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, V.283, A.286, A.287, I.290
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.7, PHO.8, CLA.80, CLA.81, LHG.88
17 PLIP interactions:14 interactions with chain A, 1 interactions with chain N, 2 interactions with chain D,- Hydrophobic interactions: A:F.119, A:P.150, A:F.182, A:M.183, A:F.186, A:Q.187, A:I.192, A:I.192, A:L.193, A:V.205, A:F.206, A:F.206, A:I.290, N:F.17, D:L.172, D:L.195
- Metal complexes: A:H.198
CLA.7: 19 residues within 4Å:- Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, F.211, W.278
- Chain D: F.147, V.165, I.168, F.169, L.172
- Ligands: CLA.6, PL9.16, DGD.71, CLA.81, PHO.82, LMG.102
14 PLIP interactions:7 interactions with chain A, 6 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.202, A:V.202, A:F.206, A:L.210, A:F.211, A:W.278, D:F.147, D:F.147, D:I.168, D:F.169, D:L.172, D:L.172
- pi-Stacking: A:F.206
- Metal complexes: H2O.3
CLA.9: 28 residues within 4Å:- Chain A: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.16, F.19
- Ligands: BCR.10, LMG.53, CLA.59, CLA.60, BCR.68, DGD.69, UNL.101
18 PLIP interactions:12 interactions with chain A, 6 interactions with chain H,- Hydrophobic interactions: A:P.39, A:T.40, A:F.93, A:P.95, A:I.96, A:W.97, A:W.97, A:L.114, A:L.121, H:Y.9, H:V.11, H:F.15, H:F.15, H:V.16, H:F.19
- Hydrogen bonds: A:I.96
- Salt bridges: A:H.118
- Metal complexes: A:H.118
CLA.24: 11 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189, V.207
- Chain G: F.33, F.40, L.54
- Ligands: CLA.25, HTG.46, BCR.99
11 PLIP interactions:6 interactions with chain B, 4 interactions with chain G, 1 Ligand-Water interactions,- Hydrophobic interactions: B:W.184, B:P.186, B:F.189, B:F.189, B:F.189, B:V.207, G:F.33, G:F.40, G:F.40, G:L.54
- Metal complexes: H2O.10
CLA.25: 26 residues within 4Å:- Chain B: W.184, G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain D: L.148
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.24, CLA.26, CLA.28, CLA.32, BCR.99, DGD.100
19 PLIP interactions:13 interactions with chain B, 5 interactions with chain G, 1 interactions with chain D,- Hydrophobic interactions: B:W.184, B:F.189, B:F.189, B:F.189, B:A.199, B:H.200, B:A.204, B:V.207, B:F.245, B:F.246, B:F.246, B:F.249, G:F.37, G:I.44, G:I.44, G:Y.48, D:L.148
- Metal complexes: B:H.200
- pi-Stacking: G:F.40
CLA.26: 24 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, M.165, H.200, H.201, F.246, A.247, V.250, V.251, T.261
- Chain G: M.34, F.37, L.41
- Ligands: CLA.25, CLA.27, CLA.28, CLA.29, CLA.31, CLA.32, CLA.33
15 PLIP interactions:14 interactions with chain B, 1 interactions with chain G,- Hydrophobic interactions: B:L.68, B:A.145, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:F.246, B:A.247, B:V.251, G:F.37
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.27: 24 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.144, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.26, CLA.28, CLA.30, CLA.34, CLA.35, CLA.36, CLA.38, BCR.41
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.60, B:F.64, B:L.147, B:L.148, B:V.244, B:A.247, B:F.457, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.28: 29 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, G.146, C.149, A.204, G.208
- Ligands: CLA.25, CLA.26, CLA.27, CLA.29, CLA.33, CLA.35, CLA.38, BCR.42, UNL.52
11 PLIP interactions:11 interactions with chain B,- Hydrophobic interactions: B:V.29, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142, B:A.145
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.29: 23 residues within 4Å:- Chain B: L.68, G.69, V.70, F.89, W.90, V.95, A.98, H.99, V.101, L.102, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: HTG.22, CLA.26, CLA.28, BCR.42, UNL.52
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:L.68, B:V.70, B:F.89, B:F.89, B:F.89, B:W.90, B:W.90, B:W.90, B:A.98, B:V.101, B:L.102, B:L.148, B:L.148, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.30: 27 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453
- Chain D: F.186, T.267, M.271
- Chain K: F.31
- Chain L: F.14
- Ligands: CLA.27, CLA.36, BCR.40, BCR.41, LMG.43, PL9.85, LHG.87
14 PLIP interactions:9 interactions with chain B, 2 interactions with chain D, 1 interactions with chain L, 1 interactions with chain K, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Y.39, B:F.60, B:F.324, B:W.449, B:W.449, B:W.449, B:A.453, D:F.186, D:T.267, L:F.14, K:F.31
- Hydrogen bonds: B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.9
CLA.31: 22 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: F.110, I.113, M.116, L.117, F.120
- Ligands: CLA.26, CLA.32, CLA.33, CLA.83, UNL.92
16 PLIP interactions:8 interactions with chain B, 8 interactions with chain D,- Hydrophobic interactions: B:A.242, B:F.245, B:F.462, B:F.462, B:I.466, B:L.473, D:F.110, D:F.110, D:F.110, D:I.113, D:M.116, D:L.117, D:L.117, D:F.120
- Hydrogen bonds: B:S.238
- Metal complexes: B:H.465
CLA.32: 25 residues within 4Å:- Chain B: F.138, L.142, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain G: T.26, T.27, L.29, M.30, F.33, M.34, L.42
- Ligands: CLA.25, CLA.26, CLA.31, CLA.33, UNL.92, BCR.99
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain G,- Hydrophobic interactions: B:F.138, B:F.138, B:L.142, B:V.207, B:A.211, B:F.214, B:F.214, B:L.228, G:L.29, G:M.30, G:F.33
- Salt bridges: B:H.215
- Metal complexes: B:H.215
CLA.33: 19 residues within 4Å:- Chain B: L.134, M.137, F.138, H.141, L.142, A.145, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.26, CLA.28, CLA.31, CLA.32, CLA.35, CLA.38, BCR.99
7 PLIP interactions:6 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:M.230, B:T.235
- Hydrogen bonds: B:H.141
- Metal complexes: H2O.9
CLA.34: 23 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Chain L: F.21
- Ligands: CLA.27, CLA.35, CLA.36, CLA.37, LHG.87, LHG.109
16 PLIP interactions:1 interactions with chain L, 15 interactions with chain B,- Hydrophobic interactions: L:F.21, B:W.4, B:W.4, B:H.8, B:L.237, B:L.237, B:I.241, B:F.457, B:F.461, B:F.463, B:F.463
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.35: 21 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, A.21, H.22, H.25, T.26, I.233, V.236, L.237, S.240, I.241, V.244
- Ligands: CLA.27, CLA.28, CLA.33, CLA.34, CLA.36, CLA.37, CLA.38
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:H.8, B:L.11, B:I.12, B:L.18, B:A.21, B:H.22, B:H.25, B:T.26, B:I.233, B:V.236, B:L.237, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.36: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.27, CLA.30, CLA.34, CLA.35, CLA.37, BCR.40, BCR.41, LMG.43, LHG.87
9 PLIP interactions:9 interactions with chain B,- Hydrophobic interactions: B:V.29, B:V.29, B:W.32, B:W.32, B:F.461, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.37: 19 residues within 4Å:- Chain B: V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.8, V.10
- Chain L: F.21, L.25
- Ligands: SQD.19, CLA.34, CLA.35, CLA.36, BCR.40, LHG.109, LMT.112
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain L,- Hydrophobic interactions: B:V.7, B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:F.21, L:L.25
- Metal complexes: B:H.8
CLA.38: 19 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.10, L.13, N.14
- Ligands: CLA.27, CLA.28, CLA.33, CLA.35, CLA.39, BCR.42
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.132, B:L.144, G:L.6, G:L.10, G:L.13, G:L.13, G:N.14
- Hydrogen bonds: B:H.22
- Metal complexes: B:H.141
CLA.39: 13 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119, F.122
- Chain G: T.4, L.6, G.7, L.10
- Ligands: CLA.38, BCR.42
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:I.19, B:I.19, B:L.23, B:A.109, B:W.112, B:W.112, B:L.119, B:F.122, G:L.6, G:L.10
- pi-Stacking: B:W.112, B:W.112
- Metal complexes: B:H.113
- Hydrogen bonds: G:T.4
- Water bridges: G:L.6
CLA.55: 22 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, L.167, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.56, CLA.57, CLA.60, CLA.61, BCR.68
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:L.157, C:I.206, C:I.222, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278
- Hydrogen bonds: C:Y.279
- Metal complexes: C:H.219
CLA.56: 22 residues within 4Å:- Chain C: W.45, I.69, H.73, L.77, L.156, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.55, CLA.57, CLA.58, CLA.64, CLA.66, HTG.74
17 PLIP interactions:17 interactions with chain C,- Hydrophobic interactions: C:W.45, C:W.45, C:I.69, C:L.77, C:L.156, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.57: 18 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100
- Ligands: CLA.55, CLA.56, CLA.61, CLA.63, CLA.64, CLA.66, CLA.67, LMG.73
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:V.96
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.58: 19 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.56, CLA.62, CLA.64, DGD.70, DGD.71, LMG.72, LHG.89
8 PLIP interactions:6 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:W.45, C:F.52, C:I.69, C:W.407, C:W.407, C:F.418, J:V.21
- Metal complexes: H2O.21
CLA.59: 23 residues within 4Å:- Chain A: F.33, L.121, S.124, C.125, G.128, W.131
- Chain C: F.246, S.255, Y.256, G.259, A.260, M.263, L.420, H.423, L.424, A.427, R.431
- Chain H: V.16, F.23
- Ligands: CLA.9, LMG.53, CLA.61, BCR.68
18 PLIP interactions:9 interactions with chain C, 7 interactions with chain A, 2 interactions with chain H,- Hydrophobic interactions: C:F.246, C:Y.256, C:Y.256, C:L.420, A:F.33, A:F.33, A:L.121, A:W.131, A:W.131, A:W.131, H:V.16, H:F.23
- Hydrogen bonds: C:Y.256
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
- pi-Stacking: A:W.131
CLA.60: 19 residues within 4Å:- Chain C: L.143, L.147, L.195, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.9, LMG.53, CLA.55, CLA.61, BCR.68
9 PLIP interactions:9 interactions with chain C,- Hydrophobic interactions: C:L.147, C:L.147, C:L.195, C:W.232, C:W.241, C:F.246
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.61: 21 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, C.226, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.55, CLA.57, CLA.59, CLA.60, CLA.63, BCR.68
13 PLIP interactions:12 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.150, C:F.246, C:F.246, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:L.261
- Metal complexes: H2O.20
CLA.62: 24 residues within 4Å:- Chain C: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Ligands: SQD.11, CLA.58, CLA.63, CLA.64, CLA.65, DGD.70, DGD.71, LMG.72, LHG.89
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:A.19, C:L.254, C:L.254, C:L.258, C:F.419, C:W.425
- Hydrogen bonds: C:N.21, C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.63: 23 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, H.146, L.150, G.250, E.251, Y.253, L.254, S.257, L.258
- Ligands: CLA.57, CLA.61, CLA.62, CLA.64, CLA.65, CLA.66
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:A.34, C:H.38, C:Y.131, C:W.133, C:W.133, C:L.150, C:Y.253
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.64: 18 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, V.21, L.24
- Ligands: CLA.56, CLA.57, CLA.58, CLA.62, CLA.63, CLA.65, LHG.89
11 PLIP interactions:8 interactions with chain C, 3 interactions with chain J,- Hydrophobic interactions: C:L.41, C:I.42, C:W.45, C:L.261, C:F.418, C:F.419, J:P.20, J:V.21, J:L.24
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.65: 31 residues within 4Å:- Chain C: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, L.41, F.109, V.112, I.116
- Chain J: F.23, L.24, A.27, W.30, Q.31
- Chain Q: L.23, N.29, L.30
- Chain S: M.19, V.20, V.23, P.24, A.28
- Ligands: CLA.62, CLA.63, CLA.64, BCR.107, LMG.124
19 PLIP interactions:8 interactions with chain J, 1 interactions with chain Q, 5 interactions with chain C, 5 interactions with chain S,- Hydrophobic interactions: J:F.23, J:F.23, J:L.24, J:A.27, J:W.30, J:Q.31, Q:L.30, C:L.24, C:L.24, C:L.41, S:M.19, S:V.20, S:V.23, S:P.24, S:A.28
- pi-Stacking: J:W.30, J:W.30
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
CLA.66: 19 residues within 4Å:- Chain C: L.32, H.35, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, I.152, G.153
- Ligands: CLA.56, CLA.57, CLA.63, CLA.67, BCR.78
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:L.32, C:H.35, C:F.128, C:Y.131, C:I.142, C:F.145, C:I.148, C:V.149, C:I.152, C:I.152
- Metal complexes: C:H.146
CLA.67: 14 residues within 4Å:- Chain C: L.32, V.36, V.106, G.110, Y.113, H.114, P.119, Y.125, F.129
- Ligands: CLA.57, CLA.66, LMG.73, BCR.78, LMG.124
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.106, C:Y.113, C:Y.125, C:F.129, C:F.129
- Hydrogen bonds: C:Y.113
- pi-Stacking: C:F.129
- Metal complexes: C:H.114
CLA.80: 23 residues within 4Å:- Chain A: T.45, F.48, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183
- Chain D: M.188, V.191, A.192, L.195, G.196, L.199
- Ligands: SQD.2, CLA.6, PHO.8, CLA.81, PL9.85, LHG.88, LHG.109
7 PLIP interactions:5 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:F.48, A:V.157, A:F.158, A:F.180, A:F.182, D:V.191
- Metal complexes: H2O.3
CLA.81: 30 residues within 4Å:- Chain A: M.183, F.206
- Chain D: L.35, W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.6, CLA.7, PL9.16, CLA.80, PHO.82
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:L.35, D:W.38, D:L.112, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:W.181, D:T.182, D:V.191, D:V.194, D:V.194, D:L.195, D:L.269
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.83: 29 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Chain G: V.32, G.35, L.38, V.39, L.42
- Chain R: G.12, L.13, G.16, A.17, V.19
- Ligands: CLA.31, DGD.86, UNL.91, UNL.123
15 PLIP interactions:11 interactions with chain D, 1 interactions with chain R, 3 interactions with chain G,- Hydrophobic interactions: D:L.26, D:P.29, D:L.33, D:L.82, D:W.83, D:W.83, D:L.106, R:V.19, G:V.32, G:L.38, G:V.39
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
- 2 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.8: 30 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, M.172, G.175, T.179, V.205, P.279, V.283
- Chain D: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: SQD.2, CLA.6, CLA.80, PL9.85, LHG.88
17 PLIP interactions:14 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:I.115, A:F.119, A:A.146, A:Y.147, A:P.150, A:F.158, A:V.205, A:V.283, D:L.195, D:A.198, D:A.202
- Hydrogen bonds: A:Q.130, A:Y.147
- pi-Stacking: A:Y.147
PHO.82: 32 residues within 4Å:- Chain A: F.206, A.209, L.210, M.214, F.255, L.258, I.259
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, A.138, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.7, PL9.16, CLA.81
23 PLIP interactions:22 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:A.31, D:A.34, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:A.138, D:P.139, D:F.143, D:V.165, D:P.265, D:V.266, D:L.269, D:L.269, A:F.206
- Hydrogen bonds: D:N.132
- pi-Stacking: D:F.136, D:F.136
- 11 x BCR: BETA-CAROTENE(Non-covalent)
BCR.10: 16 residues within 4Å:- Chain A: V.35, I.38, L.42, A.43, I.46, I.50, A.51, A.55, I.96, W.105, L.106
- Chain H: F.15
- Ligands: SQD.2, CLA.9, UNL.14, UNL.101
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain H- Hydrophobic interactions: A:V.35, A:I.38, A:L.42, A:A.43, A:I.46, A:I.50, A:A.51, A:I.96, A:W.105, A:W.105, A:L.106, H:F.15
BCR.40: 12 residues within 4Å:- Chain B: M.24, L.28, C.111, W.114
- Chain L: L.6, A.10
- Ligands: SQD.19, CLA.30, CLA.36, CLA.37, BCR.41, LMG.43
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain L- Hydrophobic interactions: B:L.28, B:L.28, B:W.114, B:W.114, L:L.6, L:A.10
BCR.41: 14 residues within 4Å:- Chain B: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: CLA.27, CLA.30, CLA.36, BCR.40, LMG.43
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.108
BCR.42: 11 residues within 4Å:- Chain B: L.105, L.108, A.109, W.112, V.115, Y.116
- Ligands: CLA.28, CLA.29, CLA.38, CLA.39, UNL.52
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.112, B:V.115, B:Y.116
BCR.68: 19 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.9, CLA.55, CLA.59, CLA.60, CLA.61
12 PLIP interactions:10 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: C:I.191, C:F.192, C:Y.194, C:L.195, C:L.195, C:I.206, C:V.209, C:I.222, C:I.222, C:F.246, H:F.23, H:L.24
BCR.78: 14 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, F.129
- Chain J: Y.6
- Chain S: V.51, G.55, N.58, F.59
- Ligands: CLA.66, CLA.67, LMG.73
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain S- Hydrophobic interactions: C:F.94, C:V.98, C:I.102, C:V.106, C:F.129, S:F.59
BCR.84: 17 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, F.103
- Chain F: P.28, T.29, F.32, L.33, I.36
- Chain I: V.20, V.24
- Ligands: DGD.86, LMG.102
15 PLIP interactions:6 interactions with chain F, 2 interactions with chain I, 7 interactions with chain D- Hydrophobic interactions: F:P.28, F:T.29, F:F.32, F:F.32, F:L.33, F:I.36, I:V.20, I:V.24, D:Y.32, D:L.39, D:L.39, D:L.39, D:F.91, D:F.103, D:F.103
BCR.99: 14 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43
- Chain R: I.2, L.6
- Ligands: CLA.24, CLA.25, CLA.32, CLA.33
9 PLIP interactions:7 interactions with chain G, 2 interactions with chain R- Hydrophobic interactions: G:F.37, G:F.37, G:F.37, G:F.37, G:V.39, G:F.40, G:I.43, R:I.2, R:L.6
BCR.107: 19 residues within 4Å:- Chain C: A.37, G.40, L.41, F.44, L.51, L.101, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.23, L.26, W.30
- Chain S: L.9, S.16
- Ligands: CLA.65, BCR.122, LMG.124
14 PLIP interactions:6 interactions with chain J, 7 interactions with chain C, 1 interactions with chain S- Hydrophobic interactions: J:Y.6, J:Y.6, J:F.23, J:F.23, J:L.26, J:W.30, C:A.37, C:L.41, C:F.44, C:F.44, C:L.51, C:A.105, C:A.115, S:L.9
BCR.114: 12 residues within 4Å:- Chain A: L.28
- Chain N: I.4, F.8, A.11, C.12, I.14, A.15, F.17, F.18, I.21, F.22
- Ligands: SQD.2
8 PLIP interactions:7 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: N:I.4, N:F.8, N:I.14, N:F.18, N:F.18, N:I.21, N:F.22, A:L.28
BCR.122: 21 residues within 4Å:- Chain C: F.44
- Chain I: A.13, T.14, G.17, M.18
- Chain J: L.12, L.16, I.19, L.22, F.23, A.25, F.28, V.29
- Chain Q: I.12, G.13, G.16, P.17
- Chain S: V.13, S.16, F.17
- Ligands: BCR.107
11 PLIP interactions:9 interactions with chain J, 1 interactions with chain I, 1 interactions with chain C- Hydrophobic interactions: J:L.12, J:L.16, J:I.19, J:I.19, J:L.22, J:L.22, J:F.23, J:A.25, J:V.29, I:A.13, C:F.44
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.12: 8 residues within 4Å:- Chain A: G.74, N.75, N.76
- Chain D: S.290, Q.291
- Chain L: M.1
- Chain N: E.2, Y.6
Ligand excluded by PLIPGOL.13: 8 residues within 4Å:- Chain A: V.313, N.315
- Chain D: W.48, G.52, Q.322
- Chain E: Y.56, I.63
- Chain P: K.129
Ligand excluded by PLIPGOL.47: 8 residues within 4Å:- Chain B: W.274, D.275, S.277, R.356, R.357, M.358, P.359
- Chain D: E.327
Ligand excluded by PLIPGOL.48: 7 residues within 4Å:- Chain B: K.331, N.437, D.439, R.443
- Chain D: I.289
- Chain L: V.3
- Ligands: LMT.112
Ligand excluded by PLIPGOL.49: 8 residues within 4Å:- Chain B: R.384, A.385, E.386, S.387, Q.393
- Chain O: L.17, Y.21, G.22
Ligand excluded by PLIPGOL.50: 7 residues within 4Å:- Chain B: I.12, N.13, A.131, L.132, G.231, N.232, I.233
Ligand excluded by PLIPGOL.51: 7 residues within 4Å:- Chain B: P.49, P.53, I.79, T.80, W.166, E.265, K.307
Ligand excluded by PLIPGOL.76: 10 residues within 4Å:- Chain A: L.341, L.343
- Chain C: M.378, T.379, H.380, A.381, G.391, V.392, E.395
- Chain P: K.47
Ligand excluded by PLIPGOL.77: 6 residues within 4Å:- Chain C: I.301, R.302, K.305, E.371
- Chain P: N.49
- Ligands: HEC.118
Ligand excluded by PLIPGOL.79: 6 residues within 4Å:- Chain C: N.355
- Chain M: I.8, L.13, K.16, P.18, R.40
Ligand excluded by PLIPGOL.98: 6 residues within 4Å:- Chain A: A.309
- Chain F: R.44
- Chain P: L.3, E.23, L.27
- Ligands: CA.97
Ligand excluded by PLIPGOL.115: 5 residues within 4Å:- Chain D: S.252
- Chain K: T.15
- Chain N: E.25, P.27
- Ligands: LHG.88
Ligand excluded by PLIPGOL.117: 6 residues within 4Å:- Chain B: E.386
- Chain O: A.33, Y.103, K.104
- Chain P: P.50, S.51
Ligand excluded by PLIPGOL.119: 6 residues within 4Å:- Chain P: S.14, P.64, P.65, N.68, E.70, G.71
Ligand excluded by PLIPGOL.120: 5 residues within 4Å:- Chain P: P.11, N.13, S.14, D.67, N.68
Ligand excluded by PLIPGOL.121: 4 residues within 4Å:- Chain O: K.104
- Chain P: G.133, K.134, Y.137
Ligand excluded by PLIP- 10 x UNL: UNKNOWN LIGAND
UNL.14: 7 residues within 4Å:- Chain A: L.13, R.16, F.17, W.20
- Ligands: SQD.2, BCR.10, UNL.101
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.13, A:W.20, A:W.20
- Salt bridges: A:R.16
UNL.52: 5 residues within 4Å:- Chain B: W.90
- Ligands: HTG.22, CLA.28, CLA.29, BCR.42
No protein-ligand interaction detected (PLIP)UNL.91: 8 residues within 4Å:- Chain D: W.22, S.23, F.120, E.121, R.124
- Chain R: L.20
- Ligands: CLA.83, UNL.92
2 PLIP interactions:1 interactions with chain R, 1 interactions with chain D- Hydrophobic interactions: R:L.20, D:E.121
UNL.92: 12 residues within 4Å:- Chain B: A.227, L.228, L.473
- Chain D: D.9, K.13, W.22
- Chain G: L.38
- Chain R: F.24
- Ligands: CLA.31, CLA.32, LMT.44, UNL.91
9 PLIP interactions:2 interactions with chain R, 2 interactions with chain B, 4 interactions with chain D, 1 interactions with chain G- Hydrophobic interactions: R:F.24, R:F.24, B:A.227, B:L.228, D:W.22, D:W.22, G:L.38
- Hydrogen bonds: D:K.13
- Salt bridges: D:K.13
UNL.101: 10 residues within 4Å:- Chain A: A.100
- Chain H: M.1, E.2, T.3, L.4, T.7
- Ligands: SQD.2, CLA.9, BCR.10, UNL.14
6 PLIP interactions:5 interactions with chain H, 1 interactions with chain A- Hydrophobic interactions: H:L.4, H:L.4, H:T.7
- Hydrogen bonds: H:E.2, H:T.3
- Water bridges: A:A.99
UNL.104: 3 residues within 4Å:- Chain I: G.25
- Ligands: DGD.70, LMG.72
No protein-ligand interaction detected (PLIP)UNL.105: 4 residues within 4Å:- Chain C: W.17
- Chain J: F.36
- Ligands: SQD.11, LHG.89
3 PLIP interactions:3 interactions with chain J- Hydrophobic interactions: J:F.36, J:F.36, J:F.36
UNL.106: 4 residues within 4Å:- Chain I: L.9
- Chain J: A.32, G.35, F.36
2 PLIP interactions:1 interactions with chain I, 1 interactions with chain J- Hydrophobic interactions: I:L.9, J:F.36
UNL.110: 2 residues within 4Å:- Chain L: I.23
- Ligands: SQD.108
2 PLIP interactions:2 interactions with chain L- Hydrophobic interactions: L:I.23, L:I.23
UNL.123: 5 residues within 4Å:- Chain D: W.83
- Chain R: S.15, G.16, V.19
- Ligands: CLA.83
1 PLIP interactions:1 interactions with chain R- Hydrophobic interactions: R:V.19
- 1 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.15: 10 residues within 4Å:- Chain A: D.170, V.185, E.189, H.332, E.333, H.337, D.342, A.344
- Chain C: E.336, R.339
19 PLIP interactions:11 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Water bridges: A:D.61
- Metal complexes: A:D.170, A:D.170, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, A:A.344, C:E.336, C:E.336, H2O.1, H2O.1, H2O.3, H2O.3
- Hydrogen bonds: C:R.339, C:R.339
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.16: 29 residues within 4Å:- Chain A: F.211, M.214, H.215, L.218, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain D: V.20, G.24, F.28, P.29, Y.32, L.35
- Chain F: A.21, T.24, L.25
- Chain R: T.23, L.27
- Ligands: CLA.7, CLA.81, PHO.82, LHG.93, SQD.95
23 PLIP interactions:15 interactions with chain A, 5 interactions with chain D, 2 interactions with chain R, 1 interactions with chain F- Hydrophobic interactions: A:F.211, A:F.211, A:H.215, A:L.218, A:A.251, A:H.252, A:F.255, A:F.255, A:I.259, A:I.259, A:F.265, A:L.271, A:L.271, A:F.274, D:V.20, D:P.29, D:Y.32, D:Y.32, D:L.35, R:T.23, R:L.27, F:L.25
- Hydrogen bonds: A:F.265
PL9.85: 32 residues within 4Å:- Chain A: F.52, I.53, I.77
- Chain D: M.188, M.189, A.192, G.193, L.199, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.23, V.26, L.29
- Chain N: F.10
- Ligands: PHO.8, CLA.30, CLA.80, LHG.88, LHG.109
28 PLIP interactions:3 interactions with chain K, 17 interactions with chain D, 4 interactions with chain N, 4 interactions with chain A- Hydrophobic interactions: K:L.23, K:V.26, K:L.29, D:M.188, D:M.189, D:A.192, D:L.199, D:I.203, D:T.207, D:W.243, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, N:F.10, N:F.10, N:F.10, N:F.10, A:F.52, A:F.52, A:I.53, A:I.77
- Hydrogen bonds: D:H.204, D:T.207, D:F.251
- pi-Stacking: D:F.251
- 1 x BCT: BICARBONATE ION(Non-functional Binders)
- 7 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.21: 6 residues within 4Å:- Chain B: W.74, D.86, G.88, F.89, L.97
- Ligands: HTG.22
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.97
- Hydrogen bonds: B:D.86, B:D.86, B:G.88, B:G.88
HTG.22: 6 residues within 4Å:- Chain B: D.86, G.88, F.89
- Ligands: HTG.21, CLA.29, UNL.52
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.89, B:F.89
- Hydrogen bonds: B:D.86, B:F.89
- Water bridges: B:W.90
HTG.45: 12 residues within 4Å:- Chain B: K.340, Y.419, K.422, F.429, E.430, F.431, T.433
- Chain M: Q.174, A.175, K.176, E.177, E.178
10 PLIP interactions:4 interactions with chain M, 6 interactions with chain B- Hydrophobic interactions: M:E.178, B:Y.419
- Hydrogen bonds: M:Q.174, M:K.176, B:K.340, B:K.340, B:K.422, B:F.431, B:F.431
- Water bridges: M:E.177
HTG.46: 4 residues within 4Å:- Chain B: W.184, I.206, V.207
- Ligands: CLA.24
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.184, B:I.206, B:I.206, B:V.207
HTG.74: 4 residues within 4Å:- Chain C: W.79, F.164, G.165
- Ligands: CLA.56
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.79
HTG.75: 6 residues within 4Å:- Chain C: V.158, F.163, N.183, P.184, L.186, I.220
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.158, C:F.163
- Hydrogen bonds: C:N.183, C:N.183
HTG.90: 6 residues within 4Å:- Chain D: G.3, W.4, F.5
- Chain G: W.24, P.28
- Ligands: LMT.44
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:F.5
- Hydrogen bonds: D:G.3, D:F.5
- 4 x CA: CALCIUM ION(Non-covalent)
CA.23: 1 residues within 4Å:- Chain B: N.437
No protein-ligand interaction detected (PLIP)CA.54: 5 residues within 4Å:- Chain C: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:F.4, C:T.6, C:E.11, C:S.12, H2O.22
CA.97: 2 residues within 4Å:- Chain F: R.44
- Ligands: GOL.98
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:R.44, H2O.29, H2O.29, H2O.41
CA.113: 3 residues within 4Å:- Chain M: T.136, N.198, V.199
5 PLIP interactions:2 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: M:T.136, M:V.199, H2O.35, H2O.36, H2O.36
- 6 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.43: 20 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, F.452, V.456
- Chain D: I.274
- Chain K: F.35
- Chain L: N.4, L.6, A.10, L.13, F.14
- Ligands: CLA.30, CLA.36, BCR.40, BCR.41, LHG.109, LMT.112
14 PLIP interactions:1 interactions with chain D, 5 interactions with chain L, 2 interactions with chain K, 6 interactions with chain B- Hydrophobic interactions: D:I.274, L:L.13, L:F.14, K:F.35, K:F.35, B:T.326, B:F.452, B:V.456
- Hydrogen bonds: L:N.4, B:T.326, B:T.326
- Water bridges: L:N.4, L:N.4, B:K.331
LMG.53: 21 residues within 4Å:- Chain A: F.93, W.97, E.98, F.117, L.120, S.124, F.155
- Chain C: L.195, L.196, K.197, S.198, F.200, E.203, W.205, F.266
- Chain H: K.5, Y.9
- Ligands: CLA.9, CLA.59, CLA.60, DGD.69
17 PLIP interactions:6 interactions with chain C, 4 interactions with chain H, 7 interactions with chain A- Hydrophobic interactions: C:F.200, C:W.205, C:F.266, A:F.93, A:F.93, A:F.117, A:L.120, A:F.155
- Hydrogen bonds: C:E.203, H:K.5, H:K.5, H:Y.9, H:Y.9, A:W.97, A:E.98
- Water bridges: C:S.198, C:S.198
LMG.72: 12 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain J: D.14, V.18, V.21
- Chain Q: Q.5, I.9
- Ligands: CLA.58, CLA.62, DGD.70, UNL.104
5 PLIP interactions:1 interactions with chain Q, 1 interactions with chain C, 3 interactions with chain J- Hydrophobic interactions: Q:I.9, J:V.18, J:V.18, J:V.21
- Salt bridges: C:H.56
LMG.73: 12 residues within 4Å:- Chain C: W.79, D.89, F.91, P.92, V.95, V.99, H.100, S.103
- Chain S: F.59
- Ligands: CLA.57, CLA.67, BCR.78
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:W.79, C:P.92, C:V.95, C:V.99, C:V.99
- Hydrogen bonds: C:D.89
LMG.102: 18 residues within 4Å:- Chain D: Y.57, G.60, C.61, N.62, F.63
- Chain F: T.29, I.36, M.39, Q.40
- Chain I: F.27, G.30, A.31, L.35, G.36
- Ligands: CLA.7, DGD.71, BCR.84, MG.103
11 PLIP interactions:5 interactions with chain D, 3 interactions with chain F, 3 interactions with chain I- Hydrophobic interactions: D:F.63, D:F.63, D:F.63, F:T.29
- Hydrogen bonds: D:F.63, F:M.39, F:Q.40, I:G.30
- Water bridges: D:N.62, I:F.27, I:G.36
LMG.124: 12 residues within 4Å:- Chain C: A.105, F.109, Y.113
- Chain S: M.19, Y.27, W.33, K.37, F.41, W.47
- Ligands: CLA.65, CLA.67, BCR.107
11 PLIP interactions:5 interactions with chain C, 6 interactions with chain S- Hydrophobic interactions: C:A.105, C:F.109, C:F.109, C:F.109, S:M.19, S:F.41, S:W.47, S:W.47
- Hydrogen bonds: C:Y.113, S:K.37
- Salt bridges: S:K.37
- 5 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.69: 29 residues within 4Å:- Chain A: L.91, S.148, F.155, I.163
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, M.263, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, F.417, L.420
- Ligands: CLA.9, LMG.53
21 PLIP interactions:18 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:F.200, C:F.200, C:W.205, C:V.207, C:F.266, C:F.266, C:F.417, C:L.420, A:F.155, A:F.155, A:I.163
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:T.277, C:T.277, C:D.342, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200
DGD.70: 19 residues within 4Å:- Chain A: F.197, L.297
- Chain C: E.65, Q.66, G.67, S.388, N.400, F.401, V.402, W.407, T.410, S.411, V.414
- Chain I: Y.32
- Ligands: CLA.58, CLA.62, DGD.71, LMG.72, UNL.104
16 PLIP interactions:12 interactions with chain C, 2 interactions with chain A, 2 interactions with chain I- Hydrophobic interactions: C:W.407, C:V.414, A:F.197, A:L.297
- Hydrogen bonds: C:E.65, C:S.388, C:N.400, C:N.400, C:V.402, C:V.402, C:W.407
- Water bridges: C:E.65, C:Q.66, C:G.67, I:Y.32, I:Y.32
DGD.71: 32 residues within 4Å:- Chain A: P.196, Q.199, L.200, A.203, W.278, F.285, F.300, N.301, F.302, S.305
- Chain C: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain D: N.62, L.64
- Chain I: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain P: Q.34
- Ligands: CLA.7, CLA.58, CLA.62, DGD.70, LHG.89, LMG.102
21 PLIP interactions:8 interactions with chain A, 6 interactions with chain C, 4 interactions with chain I, 1 interactions with chain D, 2 interactions with chain P- Hydrophobic interactions: A:P.196, A:L.200, A:A.203, A:W.278, A:F.285, A:F.300, A:F.300, I:F.28, D:L.64
- Hydrogen bonds: A:S.305, C:N.387, C:N.397, C:S.398, C:V.399, I:G.36, P:Q.34, P:Q.34
- Water bridges: C:N.397, C:N.400, I:Y.32, I:S.38
DGD.86: 9 residues within 4Å:- Chain D: L.82, G.89, D.90, F.91, T.92
- Chain E: D.45
- Ligands: CLA.83, BCR.84, SQD.95
6 PLIP interactions:1 interactions with chain E, 5 interactions with chain D- Water bridges: E:R.51
- Hydrophobic interactions: D:L.82, D:F.91, D:F.91, D:F.91
- Hydrogen bonds: D:T.92
DGD.100: 22 residues within 4Å:- Chain B: Y.192, F.249, G.253, Y.257, Y.272, Q.273, S.276, Y.278, F.462
- Chain D: G.76, H.77, I.113, I.149, L.152, G.153
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.25
21 PLIP interactions:6 interactions with chain B, 5 interactions with chain D, 10 interactions with chain G- Hydrophobic interactions: B:F.249, B:Y.257, B:F.462, D:I.113, D:I.149, D:L.152, D:L.152, G:Y.48, G:Y.48, G:Y.48
- Hydrogen bonds: B:Y.192, D:H.77, G:N.49, G:V.59, G:S.60, G:W.61
- Water bridges: B:Y.192, B:Y.192, G:S.50, G:S.60, G:S.60
- 5 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.87: 23 residues within 4Å:- Chain A: S.232, N.234
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467
- Chain D: Y.131, I.134, W.256, F.259, L.262, F.263, V.266, W.270
- Chain K: L.23
- Chain L: F.14, P.18
- Ligands: CLA.30, CLA.34, CLA.36, LHG.109
20 PLIP interactions:8 interactions with chain D, 9 interactions with chain B, 1 interactions with chain L, 2 interactions with chain A- Hydrophobic interactions: D:L.262, D:F.263, D:F.263, D:V.266, D:W.270, B:W.4, B:W.4, B:L.460, B:F.463, L:P.18
- Hydrogen bonds: D:Y.131, A:S.232, A:N.234
- Water bridges: D:R.129, D:Y.131, B:Y.5, B:R.6, B:R.6, B:R.6
- Salt bridges: B:R.6
LHG.88: 26 residues within 4Å:- Chain A: M.37
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.13, T.15, S.16, Y.18, L.19, L.22, L.29
- Chain N: F.17, A.20, I.21
- Ligands: CLA.6, PHO.8, CLA.80, PL9.85, LHG.109, GOL.115
19 PLIP interactions:8 interactions with chain D, 5 interactions with chain N, 6 interactions with chain K- Hydrophobic interactions: D:F.247, D:I.249, D:F.251, D:F.251, D:F.260, N:F.17, N:F.17, N:F.17, N:A.20, N:I.21, K:Y.18, K:L.22, K:L.22, K:L.29
- Hydrogen bonds: D:S.252, D:S.252, D:N.253, K:N.13, K:S.16
LHG.89: 25 residues within 4Å:- Chain A: R.140, W.142, A.146, L.200, F.273, V.281, W.284, F.285
- Chain C: F.15, W.18, A.19, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.11, CLA.58, CLA.62, CLA.64, DGD.71, UNL.105
17 PLIP interactions:9 interactions with chain A, 4 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: A:W.142, A:A.146, A:L.200, A:V.281, A:W.284, A:F.285, C:W.18, C:W.18
- Water bridges: A:R.140, A:R.140
- Salt bridges: A:R.140
- Hydrogen bonds: D:N.210, D:A.219, D:S.220, D:T.221, C:R.429, C:R.429
LHG.93: 18 residues within 4Å:- Chain A: L.258, I.259, F.260, Y.262, A.263
- Chain D: F.17, L.27, F.28
- Chain E: T.4, T.5, E.7, R.8, P.9, F.10, S.11
- Chain F: R.18, A.21
- Ligands: PL9.16
17 PLIP interactions:9 interactions with chain E, 3 interactions with chain D, 3 interactions with chain A, 2 interactions with chain F- Hydrophobic interactions: E:F.10, D:F.17, D:L.27, D:F.28, A:F.260, A:F.260, A:A.263, F:A.21
- Hydrogen bonds: E:T.4, E:T.4, E:T.5, E:G.6, E:E.7, E:E.7, E:F.10, E:S.11, F:R.18
LHG.109: 25 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.3, W.4, Y.5
- Chain D: W.256, F.263
- Chain K: E.11, L.12, N.13, S.16, L.19, G.20, L.22, V.26
- Chain L: V.17, P.18, F.21
- Ligands: CLA.34, CLA.37, LMG.43, CLA.80, PL9.85, LHG.87, LHG.88
14 PLIP interactions:3 interactions with chain L, 1 interactions with chain D, 5 interactions with chain K, 3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: L:V.17, L:P.18, L:F.21, D:F.263, K:L.22, K:V.26
- Hydrogen bonds: K:E.11, K:N.13, K:S.16, A:S.232, A:S.232, A:N.234, B:W.4, B:Y.5
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.94: 15 residues within 4Å:- Chain E: F.10, I.13, R.18, Y.19, H.23, T.26, I.27, L.30
- Chain F: R.18, W.19, V.22, H.23, A.26, V.27, I.30
16 PLIP interactions:8 interactions with chain F, 8 interactions with chain E,- Hydrophobic interactions: F:W.19, F:V.22, F:A.26, F:V.27, E:F.10, E:I.13, E:T.26, E:I.27, E:I.27
- Salt bridges: F:R.18, E:R.18
- pi-Stacking: F:W.19, F:W.19, E:Y.19
- Metal complexes: F:H.23, E:H.23
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x HEC: HEME C(Covalent)
HEC.118: 25 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
- Ligands: GOL.77
16 PLIP interactions:16 interactions with chain P,- Hydrophobic interactions: P:A.36, P:T.46, P:L.52, P:L.54, P:L.72, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Suga, M. et al., Native structure of photosystem II at 1.95 angstrom resolution viewed by femtosecond X-ray pulses. Nature (2015)
- Release Date
- 2014-12-03
- Peptides
- Photosystem Q(B) protein: A
Photosystem II CP47 chlorophyll apoprotein: B
Photosystem II 44 kDa reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center protein Ycf12: Q
Photosystem II reaction center protein X: R
Photosystem II reaction center protein Z: S - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
aB
bC
cD
dE
eF
fG
hH
iI
jJ
kK
lL
mM
oN
tO
uP
vQ
yR
xS
z - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 4ub8.2 (1 other biounit)
Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser
Photosystem Q(B) protein
Photosystem II CP47 chlorophyll apoprotein
Photosystem II 44 kDa reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I
Photosystem II reaction center protein J
Photosystem II reaction center protein K
Photosystem II reaction center protein L
Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Photosystem II reaction center protein T
Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Photosystem II reaction center protein Ycf12
Photosystem II reaction center protein X
Photosystem II reaction center protein Z
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