- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.1: 11 residues within 4Å:- Chain A: D.51, D.160, V.175, E.179, H.322, E.323, H.327, D.332, A.334
- Chain C: E.336, R.339
18 PLIP interactions:10 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: A:D.160, A:D.160, A:E.179, A:E.179, A:H.322, A:E.323, A:E.323, A:D.332, A:D.332, A:A.334, C:E.336, C:E.336, H2O.1, H2O.1, H2O.4, H2O.4
- Hydrogen bonds: C:R.339, C:R.339
- 1 x FE2: FE (II) ION(Non-covalent)
FE2.2: 5 residues within 4Å:- Chain A: H.205, H.262
- Chain D: H.204, H.258
- Ligands: BCT.21
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.205, A:H.262, D:H.204, D:H.258
- 2 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: N.171, H.322, E.323
- Chain D: K.307
Ligand excluded by PLIPCL.4: 5 residues within 4Å:- Chain A: H.327, N.328, F.329
- Chain C: G.335, E.336
Ligand excluded by PLIP- 35 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.5: 27 residues within 4Å:- Chain A: F.109, Y.137, P.140, L.141, S.143, V.147, F.172, M.173, I.174, F.176, Q.177, I.182, L.183, H.188, G.191, V.192, F.196, T.276, A.277, I.280
- Chain D: L.172, L.195
- Ligands: CLA.6, PHO.7, CLA.104, CLA.106, LHG.113
16 PLIP interactions:13 interactions with chain A, 3 interactions with chain D,- Hydrophobic interactions: A:F.109, A:P.140, A:F.176, A:Q.177, A:I.182, A:I.182, A:L.183, A:L.183, A:F.196, A:F.196, A:I.280, D:L.172, D:L.172, D:L.195
- Water bridges: A:I.280
- Metal complexes: A:H.188
CLA.6: 20 residues within 4Å:- Chain A: Q.189, V.192, A.193, F.196, G.197, L.200, F.201, W.268
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.5, PL9.11, DGD.82, PHO.105, CLA.106, LMG.134
12 PLIP interactions:7 interactions with chain A, 4 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.192, A:V.192, A:F.196, A:L.200, A:F.201, A:W.268, D:F.147, D:F.171, D:L.172, D:L.172
- pi-Stacking: A:F.196
- Metal complexes: H2O.5
CLA.8: 27 residues within 4Å:- Chain A: V.25, I.26, P.29, T.30, F.83, Y.84, P.85, I.86, W.87, Q.103, L.104, F.107, H.108, L.111
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.16, F.19
- Ligands: BCR.9, LMG.10, CLA.69, CLA.70, LMT.129
19 PLIP interactions:5 interactions with chain H, 14 interactions with chain A,- Hydrophobic interactions: H:V.11, H:F.15, H:F.15, H:V.16, H:F.19, A:I.26, A:P.29, A:T.30, A:F.83, A:P.85, A:I.86, A:W.87, A:W.87, A:L.104, A:F.107, A:L.111
- Hydrogen bonds: A:I.86
- Salt bridges: A:H.108
- Metal complexes: A:H.108
CLA.23: 9 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, I.43, L.54
- Ligands: CLA.24, RRX.125
11 PLIP interactions:5 interactions with chain B, 5 interactions with chain G, 1 Ligand-Water interactions,- Hydrophobic interactions: B:W.184, B:P.186, B:F.189, B:F.189, B:F.189, G:F.40, G:F.40, G:I.43, G:I.43, G:L.54
- Metal complexes: H2O.6
CLA.24: 29 residues within 4Å:- Chain B: E.183, W.184, G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain D: L.148, L.152
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.23, CLA.25, CLA.27, CLA.30, CLA.31, RRX.125, DGD.126
20 PLIP interactions:14 interactions with chain B, 4 interactions with chain G, 2 interactions with chain D,- Hydrophobic interactions: B:W.184, B:F.189, B:F.189, B:F.189, B:A.199, B:H.200, B:A.204, B:V.207, B:F.245, B:F.246, B:F.246, B:F.249, B:V.250, G:F.37, G:F.40, G:I.44, G:I.44, D:L.148, D:L.152
- Metal complexes: B:H.200
CLA.25: 24 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.250, V.251, T.261
- Chain G: M.34, F.37
- Ligands: CLA.24, CLA.26, CLA.27, CLA.28, CLA.30, CLA.31, CLA.32
17 PLIP interactions:16 interactions with chain B, 1 interactions with chain G,- Hydrophobic interactions: B:L.68, B:A.145, B:L.148, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:F.246, B:A.247, B:V.250, B:V.251, G:F.37
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.26: 22 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.25, CLA.27, CLA.28, CLA.29, CLA.33, CLA.34, CLA.35, CLA.37
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.64, B:F.64, B:F.64, B:V.244, B:A.247, B:V.251, B:F.457, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.27: 29 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, G.146, C.149, A.204, G.208
- Ligands: CLA.24, CLA.25, CLA.26, CLA.28, CLA.31, CLA.32, CLA.34, CLA.37, BCR.41, UNL.46
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:T.26, B:V.29, B:A.30, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142, B:A.145
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.28: 24 residues within 4Å:- Chain B: L.68, G.69, V.70, F.89, W.90, V.95, A.98, H.99, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.25, CLA.26, CLA.27, BCR.41, UNL.46, HTG.48
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:L.68, B:V.70, B:F.89, B:W.90, B:W.90, B:W.90, B:L.102, B:L.105, B:L.148, B:L.148, B:F.155, B:F.161, B:F.161
- Salt bridges: B:H.99
- Metal complexes: B:H.156
CLA.29: 26 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain D: F.186, M.189, M.271
- Chain K: F.29
- Ligands: CLA.26, CLA.35, BCR.40, LMG.42, PL9.109, LHG.112
17 PLIP interactions:12 interactions with chain B, 1 interactions with chain D, 3 interactions with chain K, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Y.39, B:F.60, B:F.60, B:F.60, B:L.323, B:F.324, B:F.324, B:T.326, B:W.449, B:W.449, D:F.186, K:F.29, K:F.29, K:F.29
- Hydrogen bonds: B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.12
CLA.30: 28 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: L.26, F.110, I.113, M.116, L.117, F.120
- Chain G: L.38, L.42
- Ligands: CLA.24, CLA.25, CLA.31, CLA.32, CLA.107, LMG.115, DGD.126
20 PLIP interactions:10 interactions with chain B, 8 interactions with chain D, 2 interactions with chain G,- Hydrophobic interactions: B:A.242, B:F.245, B:F.246, B:F.462, B:F.462, B:I.466, B:L.473, D:L.26, D:F.110, D:F.110, D:I.113, D:I.113, D:M.116, D:L.117, D:F.120, G:L.38, G:L.42
- Hydrogen bonds: B:S.238
- pi-Cation interactions: B:H.465
- Metal complexes: B:H.465
CLA.31: 28 residues within 4Å:- Chain B: F.138, L.142, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228, M.230
- Chain D: F.110
- Chain G: T.26, T.27, M.30, F.33, M.34, L.41, L.42
- Ligands: CLA.24, CLA.25, CLA.27, CLA.30, CLA.32, LMG.115, RRX.125
16 PLIP interactions:1 interactions with chain D, 12 interactions with chain B, 3 interactions with chain G,- Hydrophobic interactions: D:F.110, B:F.138, B:F.138, B:F.138, B:L.142, B:V.207, B:A.211, B:F.214, B:F.214, B:L.224, B:L.228, G:M.30, G:F.33, G:L.41
- Salt bridges: B:H.215
- Metal complexes: B:H.215
CLA.32: 21 residues within 4Å:- Chain B: H.22, L.134, M.137, F.138, H.141, L.142, A.145, L.228, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.25, CLA.27, CLA.30, CLA.31, CLA.34, CLA.37, RRX.125
9 PLIP interactions:8 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:L.228, B:M.230, B:T.235, B:V.236
- Hydrogen bonds: B:H.141
- Metal complexes: H2O.6
CLA.33: 21 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, L.460, F.461, F.463, G.464, W.467, H.468, R.471, F.478
- Ligands: CLA.26, CLA.34, CLA.35, CLA.36, LHG.112
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:W.4, B:H.8, B:T.9, B:L.237, B:L.237, B:I.241, B:F.461, B:F.461, B:F.463
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.34: 20 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, I.241, V.244
- Ligands: CLA.26, CLA.27, CLA.32, CLA.33, CLA.35, CLA.36, CLA.37
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:H.8, B:L.11, B:I.12, B:L.18, B:H.25, B:T.26, B:V.236, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.35: 13 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.26, CLA.29, CLA.33, CLA.34, CLA.36, BCR.40, LMG.42, LHG.112
8 PLIP interactions:8 interactions with chain B,- Hydrophobic interactions: B:V.29, B:V.29, B:W.32, B:W.32, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.36: 13 residues within 4Å:- Chain B: V.7, H.8, V.10, L.11, M.24, L.28, W.114
- Chain K: Q.6, V.8
- Ligands: CLA.33, CLA.34, CLA.35, BCR.39
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain K,- Hydrophobic interactions: B:V.7, B:L.11, B:M.24, B:L.28, B:W.114
- Metal complexes: B:H.8
- Water bridges: K:V.8
CLA.37: 18 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.13, N.14
- Ligands: CLA.26, CLA.27, CLA.32, CLA.34, CLA.38, BCR.41
8 PLIP interactions:2 interactions with chain G, 6 interactions with chain B,- Hydrophobic interactions: G:L.6, G:L.13, B:I.19, B:L.132, B:I.140, B:I.140, B:L.144
- Metal complexes: B:H.141
CLA.38: 14 residues within 4Å:- Chain B: I.19, L.23, L.106, A.109, W.112, H.113, L.119, F.122
- Chain G: T.4, L.6, G.7, L.10
- Ligands: CLA.37, BCR.41
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.23, B:L.106, B:W.112, B:L.119, B:F.122, G:L.6, G:L.10
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
- Water bridges: G:L.6
CLA.65: 21 residues within 4Å:- Chain C: L.77, L.150, G.153, A.154, L.157, L.167, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.66, CLA.67, CLA.70, CLA.71, BCR.79
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:L.157, C:I.206, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278
- Hydrogen bonds: C:Y.279
- Metal complexes: C:H.219
CLA.66: 25 residues within 4Å:- Chain C: W.45, I.69, H.73, L.77, G.153, L.156, K.160, F.164, L.261, M.264, G.265, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.65, CLA.67, CLA.68, CLA.74, CLA.76, HTG.84
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:W.45, C:W.45, C:I.69, C:L.77, C:L.156, C:K.160, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:F.419
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.67: 19 residues within 4Å:- Chain C: I.42, V.43, W.45, A.46, T.50, L.70, H.73, I.74, W.79, V.96, H.100
- Ligands: CLA.65, CLA.66, CLA.71, CLA.73, CLA.74, CLA.76, CLA.77, LMG.94
5 PLIP interactions:5 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:W.79
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.68: 19 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.66, CLA.72, CLA.74, DGD.81, DGD.82, LMG.83, LHG.114
12 PLIP interactions:10 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:W.45, C:F.52, C:I.69, C:I.69, C:W.407, C:W.407, C:W.407, C:F.418, C:F.418, C:F.418, J:V.21
- Metal complexes: H2O.20
CLA.69: 23 residues within 4Å:- Chain A: F.23, I.26, C.115, M.117, G.118, W.121
- Chain C: F.246, I.247, S.255, Y.256, G.259, A.260, H.423, L.424, A.427, R.431
- Chain H: V.16, F.23
- Ligands: CLA.8, LMG.10, CLA.71, BCR.79, DGD.80
18 PLIP interactions:10 interactions with chain C, 2 interactions with chain H, 6 interactions with chain A,- Hydrophobic interactions: C:F.246, C:Y.256, C:Y.256, C:L.424, H:V.16, H:F.23, A:F.23, A:I.26, A:W.121, A:W.121, A:W.121, A:W.121
- Hydrogen bonds: C:Y.256
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- pi-Stacking: C:H.423
- Metal complexes: C:H.423
CLA.70: 22 residues within 4Å:- Chain C: T.140, L.143, L.147, L.195, W.205, I.225, C.226, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, F.246
- Ligands: CLA.8, CLA.65, CLA.71, BCR.79, DGD.80, LMT.129
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:T.140, C:L.143, C:L.147, C:L.147, C:L.195, C:W.205, C:W.232, C:W.241
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.71: 22 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, C.226, W.241, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.65, CLA.67, CLA.69, CLA.70, CLA.73, BCR.79
17 PLIP interactions:16 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.150, C:W.241, C:F.246, C:F.246, C:F.246, C:W.248, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:L.261
- Salt bridges: C:H.146
- Metal complexes: H2O.16
CLA.72: 25 residues within 4Å:- Chain C: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Chain J: V.21, L.24
- Ligands: SQD.64, CLA.68, CLA.73, CLA.74, CLA.75, DGD.81, LMG.83, LHG.114
15 PLIP interactions:13 interactions with chain C, 2 interactions with chain J,- Hydrophobic interactions: C:N.21, C:A.22, C:L.254, C:L.254, C:L.258, C:F.419, C:W.425, J:V.21, J:L.24
- Hydrogen bonds: C:N.21, C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.73: 25 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, I.142, H.146, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.67, CLA.71, CLA.72, CLA.74, CLA.75, CLA.76
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:I.25, C:L.31, C:A.34, C:H.38, C:Y.131, C:W.133, C:W.133, C:I.142, C:L.150, C:Y.253
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.74: 18 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, V.21, L.24
- Ligands: CLA.66, CLA.67, CLA.68, CLA.72, CLA.73, CLA.75, LHG.114
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain J,- Hydrophobic interactions: C:L.41, C:W.45, C:L.261, C:F.418, C:F.419, J:P.20, J:V.21, J:L.24
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.75: 35 residues within 4Å:- Chain C: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, H.38, L.41, A.105, G.108, F.109, V.112, I.116
- Chain J: F.23, L.24, A.27, F.28, W.30, Q.31
- Chain P: I.19, L.22, N.28, L.29
- Chain R: V.20, V.23, P.24, A.28
- Ligands: CLA.72, CLA.73, CLA.74, BCR.137, LMT.174
20 PLIP interactions:6 interactions with chain C, 8 interactions with chain J, 2 interactions with chain P, 4 interactions with chain R,- Hydrophobic interactions: C:L.41, C:F.109, C:I.116, C:I.116, J:F.23, J:F.23, J:L.24, J:A.27, J:F.28, J:W.30, P:I.19, P:L.29, R:V.20, R:V.23, R:P.24, R:A.28
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
- pi-Stacking: J:W.30, J:W.30
CLA.76: 19 residues within 4Å:- Chain C: L.32, H.35, V.36, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, V.149, I.152, G.153
- Ligands: CLA.66, CLA.67, CLA.73, CLA.77, BCR.78
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:L.32, C:H.35, C:F.129, C:Y.131, C:I.142, C:F.145, C:V.149, C:V.149, C:I.152, C:I.152
- Metal complexes: C:H.146
CLA.77: 15 residues within 4Å:- Chain C: L.32, V.36, V.106, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.67, CLA.76, BCR.78, HTG.95, LMT.174
9 PLIP interactions:9 interactions with chain C,- Hydrophobic interactions: C:L.32, C:V.106, C:Y.113, C:L.122, C:F.129, C:F.129, C:F.129
- Salt bridges: C:H.114
- Metal complexes: C:H.114
CLA.104: 21 residues within 4Å:- Chain A: F.38, V.147, F.148, M.162, I.166, T.169, F.170, F.172, M.173
- Chain D: M.188, V.191, A.192, L.195, G.196, L.199
- Ligands: CLA.5, PHO.7, SQD.13, CLA.106, PL9.109, LHG.139
8 PLIP interactions:5 interactions with chain A, 2 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:F.38, A:V.147, A:F.148, A:F.170, A:F.172, D:V.191, D:L.199
- Metal complexes: H2O.3
CLA.106: 29 residues within 4Å:- Chain A: M.173, F.196
- Chain D: W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.5, CLA.6, CLA.104, PHO.105, LMG.134
18 PLIP interactions:18 interactions with chain D,- Hydrophobic interactions: D:W.38, D:L.112, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:W.181, D:T.182, D:V.191, D:V.191, D:V.194, D:V.194, D:L.195, D:L.195, D:L.269
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.107: 26 residues within 4Å:- Chain D: I.25, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Chain G: L.42
- Chain Q: G.12, L.13, L.14, G.16, A.17, V.19, L.20
- Ligands: PL9.11, CLA.30, BCR.108, UNL.173
13 PLIP interactions:4 interactions with chain Q, 9 interactions with chain D,- Hydrophobic interactions: Q:L.14, Q:A.17, Q:V.19, Q:L.20, D:P.29, D:L.33, D:W.83, D:W.83, D:L.106
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
- 2 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.7: 28 residues within 4Å:- Chain A: L.31, A.34, T.35, F.38, I.105, F.109, Y.116, Q.120, A.136, Y.137, P.140, F.148, M.162, G.165, V.195, P.269, V.273
- Chain D: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.5, CLA.104, PL9.109, LHG.113
16 PLIP interactions:14 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.31, A:A.34, A:F.38, A:I.105, A:F.109, A:A.136, A:Y.137, A:Y.137, A:P.140, A:F.148, A:V.195, A:P.269, D:L.195, D:A.202
- Hydrogen bonds: A:Q.120, A:Y.137
PHO.105: 34 residues within 4Å:- Chain A: F.196, A.199, L.200, A.203, M.204, F.245, L.248, I.249
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, A.138, P.139, F.143, F.163, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.6, PL9.11, CLA.106
26 PLIP interactions:4 interactions with chain A, 22 interactions with chain D- Hydrophobic interactions: A:F.196, A:A.199, A:L.200, A:A.203, D:A.31, D:A.34, D:L.35, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:F.136, D:A.138, D:P.139, D:F.163, D:V.165, D:P.265, D:L.269, D:L.269
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136
- 9 x BCR: BETA-CAROTENE(Non-covalent)
BCR.9: 17 residues within 4Å:- Chain A: F.7, V.25, L.32, A.33, I.36, I.40, A.41, A.45, I.86, W.95, L.96
- Chain H: F.15, L.18
- Ligands: CLA.8, LHG.12, DMS.19, UNL.141
14 PLIP interactions:11 interactions with chain A, 3 interactions with chain H- Hydrophobic interactions: A:F.7, A:L.32, A:L.32, A:A.33, A:I.36, A:I.40, A:A.41, A:I.86, A:W.95, A:W.95, A:L.96, H:F.15, H:F.15, H:L.18
BCR.39: 5 residues within 4Å:- Chain B: M.24, L.28, F.107, W.114
- Ligands: CLA.36
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:M.24, B:L.28, B:L.28, B:F.107, B:W.114, B:W.114, B:W.114, B:W.114
BCR.40: 11 residues within 4Å:- Chain B: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: CLA.29, CLA.35
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.28, B:W.32, B:I.100, B:L.108
BCR.41: 12 residues within 4Å:- Chain B: L.102, L.105, L.108, A.109, W.112, V.115, Y.116
- Ligands: CLA.27, CLA.28, CLA.37, CLA.38, UNL.46
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.102, B:L.105, B:L.108, B:W.112, B:V.115, B:V.115, B:Y.116
BCR.78: 16 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Chain J: Y.6
- Chain R: V.51, G.55, N.58, F.59
- Ligands: CLA.76, CLA.77, HTG.95, UNL.175
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain R- Hydrophobic interactions: C:F.94, C:V.98, C:I.102, C:V.106, C:L.107, C:F.129, R:N.58, R:F.59
BCR.79: 19 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.65, CLA.69, CLA.70, CLA.71
11 PLIP interactions:2 interactions with chain H, 9 interactions with chain C- Hydrophobic interactions: H:F.23, H:L.24, C:F.192, C:Y.194, C:Y.194, C:I.206, C:V.209, C:V.209, C:I.222, C:I.222, C:F.246
BCR.108: 20 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, W.94, F.103
- Chain F: P.17, T.18, F.21, L.22, I.25
- Chain I: V.21, V.25
- Ligands: DGD.81, CLA.107, DGD.110, LMG.134
14 PLIP interactions:5 interactions with chain F, 7 interactions with chain D, 2 interactions with chain I- Hydrophobic interactions: F:P.17, F:F.21, F:F.21, F:L.22, F:I.25, D:Y.32, D:L.33, D:L.39, D:F.91, D:W.94, D:F.103, D:F.103, I:V.21, I:V.25
BCR.137: 19 residues within 4Å:- Chain C: A.37, G.40, L.41, L.101, I.102, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.9, F.23, L.26, W.30
- Chain R: L.9, L.12, S.16
- Ligands: CLA.75, BCR.172
17 PLIP interactions:6 interactions with chain C, 9 interactions with chain J, 2 interactions with chain R- Hydrophobic interactions: C:A.37, C:L.41, C:L.101, C:I.102, C:A.105, C:A.115, J:Y.6, J:Y.6, J:F.9, J:F.23, J:F.23, J:F.23, J:L.26, J:W.30, J:W.30, R:L.9, R:L.12
BCR.172: 22 residues within 4Å:- Chain I: A.14, T.15, G.18, M.19
- Chain J: L.16, I.19, L.22, F.23, A.25, F.28, V.29, F.36
- Chain P: I.11, G.12, G.15, P.16
- Chain R: S.16, F.17, V.20
- Ligands: SQD.64, LHG.85, BCR.137
10 PLIP interactions:8 interactions with chain J, 1 interactions with chain P, 1 interactions with chain R- Hydrophobic interactions: J:L.16, J:I.19, J:I.19, J:L.22, J:F.23, J:A.25, J:V.29, J:F.36, P:P.16, R:V.20
- 6 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.10: 22 residues within 4Å:- Chain A: F.83, W.87, E.88, F.107, L.110, L.111, F.145
- Chain C: L.195, L.196, K.197, S.198, P.199, F.200, E.203, W.205, M.263, F.266
- Chain H: K.5, Y.9
- Ligands: CLA.8, CLA.69, DGD.80
18 PLIP interactions:5 interactions with chain A, 9 interactions with chain C, 4 interactions with chain H- Hydrophobic interactions: A:F.107, A:L.110, A:F.145, A:F.145, C:F.200, C:F.200, C:W.205, C:W.205, C:F.266
- Hydrogen bonds: A:W.87, C:E.203, H:K.5, H:K.5, H:Y.9, H:Y.9
- Water bridges: C:S.198, C:S.198, C:S.198
LMG.42: 12 residues within 4Å:- Chain B: Y.39, T.326, P.328, K.331, W.449, F.452, A.453, V.456, F.457
- Chain K: F.33
- Ligands: CLA.29, CLA.35
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain K- Hydrophobic interactions: B:T.326, B:W.449, B:F.452, B:V.456, B:F.457, K:F.33, K:F.33
- Hydrogen bonds: B:T.326
- Water bridges: B:T.43, B:Q.57
LMG.83: 14 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.22
- Chain J: D.14, V.18, V.21, L.22, A.25
- Chain P: Q.4
- Ligands: CLA.68, CLA.72, DGD.81, UNL.136
8 PLIP interactions:4 interactions with chain J, 2 interactions with chain C, 2 interactions with chain I- Hydrophobic interactions: J:V.18, J:V.21, J:L.22, J:A.25, I:I.22, I:I.22
- Hydrogen bonds: C:H.56
- Salt bridges: C:H.56
LMG.94: 12 residues within 4Å:- Chain C: W.79, D.89, F.91, P.92, V.95, V.99, H.100, S.103
- Chain R: F.59, V.62
- Ligands: CLA.67, HTG.84
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain R- Hydrophobic interactions: C:W.79, C:P.92, C:V.99
- Hydrogen bonds: C:D.89
- Water bridges: R:F.59, R:F.59, R:V.62
LMG.115: 17 residues within 4Å:- Chain B: A.227, R.229, K.497, V.498
- Chain D: D.9, K.13, W.22, R.124, L.125
- Chain G: M.34, L.38
- Chain Q: F.24
- Ligands: CLA.30, CLA.31, LMT.43, UNL.116, HTG.117
10 PLIP interactions:4 interactions with chain B, 4 interactions with chain D, 1 interactions with chain G, 1 interactions with chain Q- Hydrophobic interactions: B:A.227, D:W.22, D:W.22, G:L.38, Q:F.24
- Hydrogen bonds: B:K.497, B:K.497
- Salt bridges: B:R.229, D:K.13, D:K.13
LMG.134: 19 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: T.18, I.25, M.28, Q.29
- Chain I: F.28, G.31, A.32, L.36
- Ligands: CLA.6, DGD.82, CLA.106, BCR.108, MG.135
11 PLIP interactions:3 interactions with chain I, 6 interactions with chain D, 2 interactions with chain F- Hydrophobic interactions: I:F.28, D:L.39, D:L.39, D:F.63, D:F.63
- Hydrogen bonds: I:G.31, D:F.63, F:M.28, F:Q.29
- Water bridges: I:G.37, D:N.62
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.11: 26 residues within 4Å:- Chain A: F.201, M.204, H.205, L.208, H.242, F.245, I.249, A.253, S.254, F.255, L.261, F.264
- Chain D: G.24, F.28, P.29, A.31, Y.32, L.35
- Chain F: A.10, T.13, L.14
- Chain Q: T.23, L.27
- Ligands: CLA.6, PHO.105, CLA.107
22 PLIP interactions:12 interactions with chain A, 2 interactions with chain F, 6 interactions with chain D, 2 interactions with chain Q- Hydrophobic interactions: A:F.201, A:L.208, A:L.208, A:L.208, A:F.245, A:F.245, A:F.245, A:I.249, A:L.261, A:L.261, A:F.264, F:A.10, F:L.14, D:F.28, D:F.28, D:P.29, D:A.31, D:Y.32, D:L.35, Q:T.23, Q:L.27
- Hydrogen bonds: A:F.255
PL9.109: 31 residues within 4Å:- Chain A: F.42, I.43, I.67
- Chain D: M.188, M.189, A.192, G.193, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.21, V.24, L.27
- Chain M: F.10
- Ligands: PHO.7, CLA.29, CLA.104, LHG.113, LHG.139
24 PLIP interactions:14 interactions with chain D, 4 interactions with chain M, 4 interactions with chain A, 2 interactions with chain K- Hydrophobic interactions: D:M.189, D:A.192, D:I.203, D:T.207, D:W.243, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, M:F.10, M:F.10, M:F.10, M:F.10, A:F.42, A:F.42, A:I.43, A:I.67, K:L.21, K:V.24
- Hydrogen bonds: D:T.207, D:F.251
- pi-Stacking: D:F.251
- 6 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.12: 7 residues within 4Å:- Chain A: L.3, R.6, F.7, N.9, W.10
- Ligands: BCR.9, UNL.132
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.7, A:W.10, A:W.10
LHG.85: 6 residues within 4Å:- Chain C: W.17
- Chain D: R.223
- Chain J: F.28, F.36
- Ligands: SQD.64, BCR.172
5 PLIP interactions:3 interactions with chain J, 1 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: J:F.28, J:F.36, J:F.36, C:W.17
- Hydrogen bonds: D:R.223
LHG.112: 21 residues within 4Å:- Chain A: N.224
- Chain B: W.4, Y.5, R.6, F.463, W.467, F.478
- Chain D: Y.131, I.134, W.256, F.259, V.266, T.267, W.270, M.271
- Chain K: I.22, L.25
- Ligands: CLA.29, CLA.33, CLA.35, LHG.139
14 PLIP interactions:7 interactions with chain B, 2 interactions with chain D, 2 interactions with chain A, 3 interactions with chain K- Hydrophobic interactions: B:W.4, B:Y.5, B:F.463, B:F.463, D:V.266, D:W.270, K:I.22, K:L.25, K:L.25
- Hydrogen bonds: B:Y.5, A:N.224, A:N.224
- Water bridges: B:R.6
- Salt bridges: B:R.6
LHG.113: 27 residues within 4Å:- Chain A: M.27, N.224
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.11, T.13, S.14, Y.16, L.17, L.20, V.24, L.27
- Chain M: F.10, F.17, A.20
- Ligands: CLA.5, PHO.7, SQD.13, PL9.109, LHG.139
19 PLIP interactions:4 interactions with chain M, 6 interactions with chain K, 8 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: M:F.10, M:F.17, M:F.17, M:A.20, K:L.17, K:L.20, K:V.24, K:L.27, D:F.247, D:F.247, D:F.251, D:F.260, D:F.260
- Hydrogen bonds: K:N.11, K:S.14, D:S.252, D:S.252, D:N.253, A:N.224
LHG.114: 22 residues within 4Å:- Chain A: R.130, W.132, F.263, A.266, A.267, V.271, W.274
- Chain C: F.15, W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.64, CLA.68, CLA.72, CLA.74, DGD.82
15 PLIP interactions:4 interactions with chain D, 7 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: D:N.210, D:A.219, D:S.220, D:T.221, C:R.429, C:R.429
- Hydrophobic interactions: A:W.132, A:A.266, A:A.267, A:V.271, A:W.274, C:W.18, C:W.18
- Water bridges: A:R.130
- Salt bridges: A:R.130
LHG.139: 21 residues within 4Å:- Chain A: S.222, N.224
- Chain B: P.3, W.4, Y.5
- Chain D: A.192, W.256, F.263
- Chain K: E.9, L.10, N.11, S.14, L.17, G.18, L.20, L.21, V.24
- Ligands: CLA.104, PL9.109, LHG.112, LHG.113
17 PLIP interactions:8 interactions with chain K, 4 interactions with chain D, 2 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: K:L.17, K:L.20, K:L.21, K:V.24, D:A.192, D:F.263, D:F.263, D:F.263, B:W.4
- Hydrogen bonds: K:E.9, K:E.9, K:N.11, K:S.14, B:W.4, A:S.222, A:S.222, A:N.224
- 3 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.13: 13 residues within 4Å:- Chain A: W.10, N.16, R.17, L.18, V.20, I.28, L.31, L.32, T.35
- Chain M: F.22
- Ligands: CLA.104, LHG.113, UNL.155
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.20, A:L.31, A:L.32, A:L.32, A:T.35
- Hydrogen bonds: A:N.16, A:R.17, A:L.18
SQD.64: 23 residues within 4Å:- Chain A: L.190, G.194, F.255, N.257, S.260, F.263, A.267, W.268, V.271, G.272
- Chain C: Q.10, A.16, W.17, W.18
- Chain D: F.222, R.223
- Chain I: I.22
- Chain J: A.25, F.28
- Ligands: CLA.72, LHG.85, LHG.114, BCR.172
15 PLIP interactions:1 interactions with chain D, 9 interactions with chain A, 2 interactions with chain J, 1 interactions with chain I, 2 interactions with chain C- Salt bridges: D:R.223
- Hydrophobic interactions: A:F.255, A:F.263, A:A.267, A:W.268, A:W.268, A:V.271, J:F.28, J:F.28, I:I.22, C:W.17
- Hydrogen bonds: A:N.257, A:S.260, A:S.260, C:Q.10
SQD.111: 8 residues within 4Å:- Chain D: R.14, R.16
- Chain E: E.3
- Chain F: F.4, T.5, V.6
- Chain Q: I.30, D.34
5 PLIP interactions:2 interactions with chain D, 2 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: D:R.14, F:F.4, F:V.6, E:E.3
- Salt bridges: D:R.16
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.14: 9 residues within 4Å:- Chain A: I.43, A.44, L.62, Y.63, G.64
- Chain D: R.294
- Ligands: UNL.15, DMS.18, UNL.155
7 PLIP interactions:4 interactions with chain A, 1 interactions with chain L, 2 interactions with chain D- Hydrophobic interactions: A:I.43, A:A.44
- Hydrogen bonds: A:L.62, A:Y.63, D:R.294, D:R.294
- Water bridges: L:G.110
LMT.43: 10 residues within 4Å:- Chain B: R.223, L.224, A.227
- Chain D: F.5, D.6, D.9
- Chain G: W.24, A.31, M.34
- Ligands: LMG.115
8 PLIP interactions:4 interactions with chain B, 2 interactions with chain G, 2 interactions with chain D- Hydrophobic interactions: B:L.224, B:A.227, G:W.24, G:A.31
- Hydrogen bonds: B:R.223, D:D.6, D:D.9
- Salt bridges: B:R.223
LMT.122: 4 residues within 4Å:- Chain E: W.31, S.35
- Chain F: A.27, F.30
No protein-ligand interaction detected (PLIP)LMT.129: 11 residues within 4Å:- Chain A: W.4, E.5
- Chain C: W.241, R.244
- Chain H: V.20, L.24, S.25, G.26, R.30
- Ligands: CLA.8, CLA.70
7 PLIP interactions:3 interactions with chain H, 3 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: H:V.20, C:W.241
- Hydrogen bonds: H:R.30, C:R.244, C:R.244, A:N.2
- Water bridges: H:R.30
LMT.156: 5 residues within 4Å:- Chain A: L.62
- Chain M: M.1, I.4, V.7
- Ligands: UNL.155
4 PLIP interactions:4 interactions with chain M- Hydrophobic interactions: M:I.4, M:V.7
- Hydrogen bonds: M:T.3, M:T.3
LMT.174: 11 residues within 4Å:- Chain C: F.109, Y.113, R.117
- Chain R: Y.27, W.33, K.37, S.44, W.47, I.48
- Ligands: CLA.75, CLA.77
11 PLIP interactions:6 interactions with chain R, 5 interactions with chain C- Hydrophobic interactions: R:W.47, R:W.47, R:I.48, C:F.109, C:F.109
- Hydrogen bonds: R:Y.27, C:Y.113, C:Y.113, C:R.117
- Salt bridges: R:K.37, R:K.37
- 13 x UNL: UNKNOWN LIGAND(Non-functional Binders)
UNL.15: 2 residues within 4Å:- Ligands: LMT.14, UNL.155
No protein-ligand interaction detected (PLIP)UNL.45: 6 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, I.428
- Chain L: E.176
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:K.340, B:K.422, B:I.428
UNL.46: 4 residues within 4Å:- Chain B: W.90
- Ligands: CLA.27, CLA.28, BCR.41
No protein-ligand interaction detected (PLIP)UNL.116: 4 residues within 4Å:- Chain D: W.22, E.121
- Chain Q: L.20
- Ligands: LMG.115
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain Q- Hydrophobic interactions: D:E.121, Q:L.20
UNL.130: 3 residues within 4Å:- Chain H: M.1, E.2, T.3
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:T.3
UNL.131: 6 residues within 4Å:- Chain H: E.2, T.3, I.6, T.7, F.14
- Ligands: UNL.132
5 PLIP interactions:5 interactions with chain H- Hydrophobic interactions: H:E.2, H:T.3, H:I.6, H:T.7, H:F.14
UNL.132: 4 residues within 4Å:- Chain H: T.3, T.7
- Ligands: LHG.12, UNL.131
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:T.3, H:T.7
UNL.136: 6 residues within 4Å:- Chain I: V.25, G.26, Y.30, Y.33
- Ligands: DGD.81, LMG.83
4 PLIP interactions:4 interactions with chain I- Hydrophobic interactions: I:V.25, I:Y.30, I:Y.33, I:Y.33
UNL.141: 6 residues within 4Å:- Chain A: I.86, A.90
- Chain H: M.1, L.4
- Chain L: K.66
- Ligands: BCR.9
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain H- Hydrophobic interactions: A:I.86, H:L.4
UNL.155: 6 residues within 4Å:- Chain M: V.7, A.11
- Ligands: SQD.13, LMT.14, UNL.15, LMT.156
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:V.7, M:A.11
UNL.157: 8 residues within 4Å:- Chain N: T.12, N.21, P.47, Y.48, E.49, V.77, T.78, E.79
4 PLIP interactions:4 interactions with chain N- Hydrophobic interactions: N:T.12, N:P.47, N:E.49, N:E.79
UNL.173: 6 residues within 4Å:- Chain D: W.83, G.89
- Chain Q: S.15, G.16, V.19
- Ligands: CLA.107
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain Q- Hydrophobic interactions: D:W.83, Q:V.19
UNL.175: 2 residues within 4Å:- Chain R: F.59
- Ligands: BCR.78
3 PLIP interactions:3 interactions with chain R- Hydrophobic interactions: R:F.59, R:F.59, R:F.59
- 67 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.16: 7 residues within 4Å:- Chain A: N.305, I.310
- Chain D: H.51, G.52, L.53, Q.322
- Chain E: I.59
Ligand excluded by PLIPDMS.17: 3 residues within 4Å:- Chain A: E.88, A.90
- Ligands: DMS.128
Ligand excluded by PLIPDMS.18: 6 residues within 4Å:- Chain A: P.47, P.56
- Chain D: E.300
- Chain L: R.112
- Ligands: LMT.14, DMS.20
Ligand excluded by PLIPDMS.19: 3 residues within 4Å:- Chain A: L.92, D.93
- Ligands: BCR.9
Ligand excluded by PLIPDMS.20: 9 residues within 4Å:- Chain A: R.54, E.55, P.56
- Chain D: P.299, E.300, E.302
- Chain L: R.149, P.156
- Ligands: DMS.18
Ligand excluded by PLIPDMS.49: 7 residues within 4Å:- Chain B: W.274, D.275, S.277, R.357, M.358, P.359
- Ligands: DMS.62
Ligand excluded by PLIPDMS.50: 7 residues within 4Å:- Chain B: A.385, E.386, S.387, Q.393
- Chain N: Y.14, G.15
- Ligands: HTG.118
Ligand excluded by PLIPDMS.51: 5 residues within 4Å:- Chain B: I.12, P.15, P.130, A.131, L.132
Ligand excluded by PLIPDMS.52: 4 residues within 4Å:- Chain B: N.347, K.348, E.349, Q.394
Ligand excluded by PLIPDMS.53: 4 residues within 4Å:- Chain B: Q.408, T.409, F.410
- Ligands: DMS.57
Ligand excluded by PLIPDMS.54: 7 residues within 4Å:- Chain B: W.467, A.470, F.474, F.478
- Chain D: P.130, Y.131, I.134
Ligand excluded by PLIPDMS.55: 1 residues within 4Å:- Chain B: M.36
Ligand excluded by PLIPDMS.56: 4 residues within 4Å:- Chain B: W.74, S.75
- Ligands: HTG.44, HTG.47
Ligand excluded by PLIPDMS.57: 5 residues within 4Å:- Chain B: T.409, F.410, T.411, D.412
- Ligands: DMS.53
Ligand excluded by PLIPDMS.58: 2 residues within 4Å:- Chain B: T.411, P.413
Ligand excluded by PLIPDMS.59: 3 residues within 4Å:- Chain B: Y.389
- Ligands: HTG.118, DMS.119
Ligand excluded by PLIPDMS.60: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPDMS.61: 4 residues within 4Å:- Chain B: V.115, Y.116, W.117, D.118
Ligand excluded by PLIPDMS.62: 6 residues within 4Å:- Chain B: R.271, D.275
- Chain D: N.73, S.155, E.327
- Ligands: DMS.49
Ligand excluded by PLIPDMS.63: 4 residues within 4Å:- Chain B: S.302, A.303, I.304, P.305
Ligand excluded by PLIPDMS.87: 4 residues within 4Å:- Chain C: W.171, N.210, R.344
- Chain L: D.5
Ligand excluded by PLIPDMS.88: 4 residues within 4Å:- Chain C: G.202, D.342, R.344
- Chain L: Y.4
Ligand excluded by PLIPDMS.89: 4 residues within 4Å:- Chain C: E.376
- Chain O: I.100, F.101, P.102
Ligand excluded by PLIPDMS.90: 4 residues within 4Å:- Chain C: P.62, E.282
- Chain O: P.102
- Ligands: DMS.91
Ligand excluded by PLIPDMS.91: 8 residues within 4Å:- Chain C: P.83, G.84, E.86
- Chain O: D.99, I.100, P.102, R.105
- Ligands: DMS.90
Ligand excluded by PLIPDMS.92: 4 residues within 4Å:- Chain C: G.174, G.175, W.369, R.373
Ligand excluded by PLIPDMS.93: 4 residues within 4Å:- Chain C: W.171, P.346, E.349, P.350
Ligand excluded by PLIPDMS.96: 4 residues within 4Å:- Chain C: P.59, V.87, V.88, D.89
Ligand excluded by PLIPDMS.97: 1 residues within 4Å:- Chain C: E.124
Ligand excluded by PLIPDMS.98: 3 residues within 4Å:- Chain C: L.155, V.158, F.163
Ligand excluded by PLIPDMS.99: 4 residues within 4Å:- Chain C: V.190, G.193, Y.194, K.197
Ligand excluded by PLIPDMS.100: 4 residues within 4Å:- Chain C: T.185, L.186, D.187
- Ligands: HTG.86
Ligand excluded by PLIPDMS.101: 3 residues within 4Å:- Chain C: T.236, T.237, F.239
Ligand excluded by PLIPDMS.102: 6 residues within 4Å:- Chain C: K.30, I.116, R.117, G.118, E.120
- Chain P: N.28
Ligand excluded by PLIPDMS.103: 2 residues within 4Å:- Chain C: K.439
- Chain D: A.219
Ligand excluded by PLIPDMS.119: 4 residues within 4Å:- Chain D: F.331
- Chain O: V.135, Y.136
- Ligands: DMS.59
Ligand excluded by PLIPDMS.120: 5 residues within 4Å:- Chain D: I.293, E.297
- Chain L: L.171, E.178, L.179
Ligand excluded by PLIPDMS.121: 4 residues within 4Å:- Chain A: G.64
- Chain D: Q.291, R.294, F.301
Ligand excluded by PLIPDMS.124: 5 residues within 4Å:- Chain F: Q.32, R.33
- Chain I: G.35, S.38, L.40
Ligand excluded by PLIPDMS.127: 5 residues within 4Å:- Chain G: P.22, G.23, W.24, G.25
- Ligands: HTG.117
Ligand excluded by PLIPDMS.128: 5 residues within 4Å:- Chain A: W.87
- Chain H: M.1, E.2, K.5
- Ligands: DMS.17
Ligand excluded by PLIPDMS.133: 7 residues within 4Å:- Chain A: Y.125
- Chain C: A.434, A.435
- Chain H: P.28, A.29, R.34, K.35
Ligand excluded by PLIPDMS.140: 3 residues within 4Å:- Chain K: A.26, S.30, F.34
Ligand excluded by PLIPDMS.143: 5 residues within 4Å:- Chain L: N.121, V.123, E.142, N.144, K.191
Ligand excluded by PLIPDMS.144: 6 residues within 4Å:- Chain L: Q.127, V.130, S.132, T.134, S.136, T.137
Ligand excluded by PLIPDMS.145: 2 residues within 4Å:- Chain L: P.17, R.39
Ligand excluded by PLIPDMS.146: 5 residues within 4Å:- Chain L: K.140, Q.193, S.195, E.213, E.215
Ligand excluded by PLIPDMS.147: 1 residues within 4Å:- Chain L: A.108
Ligand excluded by PLIPDMS.148: 3 residues within 4Å:- Chain L: F.187, S.188, L.189
Ligand excluded by PLIPDMS.149: 4 residues within 4Å:- Chain C: R.344
- Chain L: T.3, Y.4, D.5
Ligand excluded by PLIPDMS.150: 4 residues within 4Å:- Chain L: P.44, T.45, F.47, L.67
Ligand excluded by PLIPDMS.151: 6 residues within 4Å:- Chain B: D.333, K.422, F.431
- Chain L: Q.173, A.174, K.175
Ligand excluded by PLIPDMS.152: 8 residues within 4Å:- Chain L: S.167, A.168, L.171, P.172, A.174, K.175, E.176, N.183
Ligand excluded by PLIPDMS.153: 6 residues within 4Å:- Chain L: R.181, R.186, D.220, G.223, H.225, E.226
Ligand excluded by PLIPDMS.154: 5 residues within 4Å:- Chain L: S.125, T.126, Q.127, D.138, K.140
Ligand excluded by PLIPDMS.158: 5 residues within 4Å:- Chain N: V.43, A.46, R.90, Y.91
- Ligands: DMS.159
Ligand excluded by PLIPDMS.159: 6 residues within 4Å:- Chain N: N.21, A.46, P.47, V.80, V.85
- Ligands: DMS.158
Ligand excluded by PLIPDMS.160: 8 residues within 4Å:- Chain A: L.331, L.333
- Chain C: M.378, T.379, A.381, G.391, V.392
- Chain O: K.47
Ligand excluded by PLIPDMS.163: 3 residues within 4Å:- Chain O: G.127, D.128
- Ligands: DMS.167
Ligand excluded by PLIPDMS.164: 4 residues within 4Å:- Chain O: L.3, T.4, P.5
- Ligands: DMS.166
Ligand excluded by PLIPDMS.165: 5 residues within 4Å:- Chain F: R.33
- Chain O: L.3, E.23, L.27
- Ligands: DMS.166
Ligand excluded by PLIPDMS.166: 6 residues within 4Å:- Chain F: R.33
- Chain O: E.2, L.3, E.23
- Ligands: DMS.164, DMS.165
Ligand excluded by PLIPDMS.167: 4 residues within 4Å:- Chain O: K.124, I.125, G.127
- Ligands: DMS.163
Ligand excluded by PLIPDMS.168: 3 residues within 4Å:- Chain N: A.26, I.29
- Chain O: S.51
Ligand excluded by PLIPDMS.169: 5 residues within 4Å:- Chain O: R.31, L.32, Y.35, N.106, L.107
Ligand excluded by PLIPDMS.170: 4 residues within 4Å:- Chain O: P.64, E.70, G.71, D.74
Ligand excluded by PLIPDMS.171: 8 residues within 4Å:- Chain A: H.294
- Chain C: I.396
- Chain O: G.43, L.126, K.129, G.133, Y.136, Y.137
Ligand excluded by PLIP- 1 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.21: 9 residues within 4Å:- Chain A: H.205, V.209, E.234, Y.236, H.262
- Chain D: H.204, Y.234, H.258
- Ligands: FE2.2
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:Y.236, A:Y.236, D:Y.234
- Water bridges: A:S.258
- 2 x CA: CALCIUM ION(Non-covalent)
CA.22: 2 residues within 4Å:- Chain B: E.434, N.437
No protein-ligand interaction detected (PLIP)CA.142: 3 residues within 4Å:- Chain L: T.135, N.197, V.198
4 PLIP interactions:2 interactions with chain L, 2 Ligand-Water interactions- Metal complexes: L:T.135, L:V.198, H2O.34, H2O.37
- 9 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.44: 7 residues within 4Å:- Chain B: L.41, S.73, S.75, W.77, E.93, L.97
- Ligands: DMS.56
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:E.93, B:L.97
- Hydrogen bonds: B:S.73, B:S.75, B:E.93, B:E.93
- Water bridges: B:L.41
HTG.47: 7 residues within 4Å:- Chain B: W.74, D.86, P.87, G.88, F.89
- Ligands: HTG.48, DMS.56
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:W.74
- Hydrogen bonds: B:D.86
HTG.48: 5 residues within 4Å:- Chain B: D.86, G.88, F.89
- Ligands: CLA.28, HTG.47
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.89
- Hydrogen bonds: B:F.89
HTG.84: 5 residues within 4Å:- Chain C: W.79, F.164, G.165
- Ligands: CLA.66, LMG.94
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:W.79, C:F.163
HTG.86: 5 residues within 4Å:- Chain C: D.187, P.188, W.221, L.224
- Ligands: DMS.100
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.224
HTG.95: 3 residues within 4Å:- Chain C: Y.125
- Ligands: CLA.77, BCR.78
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Y.125
HTG.117: 8 residues within 4Å:- Chain D: G.3, W.4, F.5
- Chain G: W.24, T.27, P.28
- Ligands: LMG.115, DMS.127
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain G- Hydrophobic interactions: D:W.4, D:F.5, G:T.27
- Hydrogen bonds: D:F.5
- Water bridges: D:G.3
HTG.118: 9 residues within 4Å:- Chain B: E.386, K.388
- Chain D: E.333
- Chain N: A.27, Q.30
- Chain O: R.55, Y.136
- Ligands: DMS.50, DMS.59
10 PLIP interactions:4 interactions with chain N, 3 interactions with chain O, 1 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: N:A.27, B:E.386
- Water bridges: N:K.97, N:K.97, N:K.97, D:E.333
- Hydrogen bonds: O:R.55, O:R.55, O:Y.136, D:E.333
HTG.162: 6 residues within 4Å:- Chain O: A.89, E.90, R.96, S.97, D.99, I.100
6 PLIP interactions:6 interactions with chain O- Hydrogen bonds: O:E.90, O:R.96, O:D.99
- Water bridges: O:D.99, O:D.99, O:D.99
- 5 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.80: 31 residues within 4Å:- Chain A: L.81, S.138, L.141, A.142, F.145, I.150, I.153
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: LMG.10, CLA.69, CLA.70
19 PLIP interactions:5 interactions with chain A, 14 interactions with chain C- Hydrophobic interactions: A:L.141, A:F.145, A:F.145, A:F.145, A:I.153, C:F.200, C:W.205, C:V.207, C:F.266, C:L.420
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:T.277, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200, C:D.342
DGD.81: 21 residues within 4Å:- Chain A: H.185, F.187, L.287
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411
- Chain I: Y.33
- Ligands: CLA.68, CLA.72, DGD.82, LMG.83, BCR.108, UNL.136
15 PLIP interactions:12 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:L.386, C:L.386, C:W.407, A:F.187, A:F.187, A:L.287
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402, C:W.407
- Water bridges: C:Q.66, C:G.67, C:G.67
DGD.82: 28 residues within 4Å:- Chain A: P.186, Q.189, L.190, A.193, F.290, N.291, F.292, S.295
- Chain C: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain D: N.62
- Chain I: F.29, A.32, Y.33, G.37, S.38, S.39
- Chain O: Q.34
- Ligands: CLA.6, CLA.68, DGD.81, LHG.114, LMG.134
14 PLIP interactions:6 interactions with chain C, 5 interactions with chain A, 2 interactions with chain I, 1 interactions with chain O- Hydrogen bonds: C:N.387, C:N.397, C:S.398, C:S.398, C:V.399, A:S.295, I:G.37, I:S.39, O:Q.34
- Water bridges: C:N.400
- Hydrophobic interactions: A:L.190, A:L.190, A:L.190, A:A.193
DGD.110: 10 residues within 4Å:- Chain D: T.40, L.82, G.89, F.91, T.92
- Chain E: D.41, V.42, F.43
- Chain F: F.20
- Ligands: BCR.108
8 PLIP interactions:3 interactions with chain E, 4 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: E:V.42, E:F.43, D:T.40, D:L.82, D:F.91, F:F.20
- Hydrogen bonds: E:D.41, D:T.92
DGD.126: 28 residues within 4Å:- Chain B: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain D: G.76, H.77, A.109, F.110, I.113, V.144, I.149, L.152, G.153, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.24, CLA.30
28 PLIP interactions:11 interactions with chain B, 9 interactions with chain D, 8 interactions with chain G- Hydrophobic interactions: B:F.249, B:Y.257, B:T.451, B:A.455, B:F.462, B:F.462, D:A.109, D:F.110, D:V.144, D:I.149, D:L.152, D:L.152, D:L.281, G:L.45, G:Y.48, G:Y.48, G:Y.48
- Hydrogen bonds: B:Y.192, B:Y.257, B:S.276, B:S.276, D:H.77, D:H.77, G:N.49, G:V.59, G:S.60
- Water bridges: B:T.270, G:V.59
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.123: 15 residues within 4Å:- Chain E: I.9, R.14, Y.15, I.18, H.19, T.22, L.26
- Chain F: I.3, R.7, W.8, V.11, H.12, A.15, V.16, I.19
17 PLIP interactions:8 interactions with chain E, 9 interactions with chain F,- Hydrophobic interactions: E:I.9, E:I.18, E:T.22, E:L.26, F:I.3, F:W.8, F:V.11, F:A.15, F:V.16
- Salt bridges: E:R.4, E:R.14, F:R.7
- pi-Stacking: E:Y.15, F:W.8, F:W.8
- Metal complexes: E:H.19, F:H.12
- 1 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
RRX.125: 15 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43
- Chain Q: T.1, L.6, F.10
- Ligands: CLA.23, CLA.24, CLA.31, CLA.32
9 PLIP interactions:3 interactions with chain Q, 6 interactions with chain G- Hydrophobic interactions: Q:L.6, Q:F.10, G:F.37, G:F.37, G:F.37, G:F.37, G:V.39, G:F.40
- Hydrogen bonds: Q:T.1
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.135: 5 residues within 4Å:- Chain I: G.31, A.34, G.35, L.36
- Ligands: LMG.134
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.31, I:A.34, I:L.36, H2O.28
MG.138: 3 residues within 4Å:- Chain J: D.10, D.14
- Chain P: Q.4
5 PLIP interactions:2 interactions with chain J, 3 Ligand-Water interactions- Metal complexes: J:D.10, J:D.14, H2O.31, H2O.31, H2O.46
- 1 x HEC: HEME C(Covalent)
HEC.161: 25 residues within 4Å:- Chain O: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
20 PLIP interactions:20 interactions with chain O,- Hydrophobic interactions: O:A.36, O:T.46, O:N.49, O:L.52, O:L.54, O:L.59, O:L.72, O:Y.75, O:Y.75, O:Y.75, O:I.88, O:P.93, O:I.115, O:I.119
- Hydrogen bonds: O:D.53, O:Y.82
- Water bridges: O:N.49
- pi-Stacking: O:Y.75
- Metal complexes: O:H.41, O:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Uto, S. et al., Mutual relationships between structural and functional changes in a PsbM-deletion mutant of photosystem II. Faraday Discuss. (2017)
- Release Date
- 2017-03-22
- Peptides
- Photosystem II protein D1 1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II manganese-stabilizing polypeptide: L
Photosystem II reaction center protein T: M
Photosystem II 12 kDa extrinsic protein: N
Cytochrome c-550: O
Photosystem II reaction center protein Ycf12: P
Photosystem II reaction center X protein: Q
Photosystem II reaction center protein Z: R - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
HH
II
JJ
KK
LL
OM
TN
UO
VP
YQ
XR
Z - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 5h2f.1 (1 other biounit)
Crystal structure of the PsbM-deletion mutant of photosystem II
Photosystem II protein D1 1
Photosystem II CP47 reaction center protein
Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I
Photosystem II reaction center protein J
Photosystem II reaction center protein K
Photosystem II reaction center protein L
Photosystem II manganese-stabilizing polypeptide
Photosystem II reaction center protein T
Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Photosystem II reaction center protein Ycf12
Photosystem II reaction center X protein
Photosystem II reaction center protein Z
Related Entries With Identical Sequence
1izl.1 | 1mz4.1 | 1s5l.1 | 1s5l.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 | 5b66.1 | 5e79.1 more...less...5e7c.1 | 5gth.1 | 5gth.2 | 5gti.1 | 5gti.2 | 5h2f.2 | 5kaf.1 | 5kai.1 | 5mx2.1 | 5mx2.2 | 5tis.1 | 5v2c.1 | 5ws5.1 | 5ws5.2 | 5ws6.1 | 5ws6.2 | 5zzn.1 | 5zzn.2 | 6dhe.1 | 6dhf.1 | 6dhg.1 | 6dhh.1 | 6dho.1 | 6dhp.1 | 6jlj.1 | 6jlk.1 | 6jll.1 | 6jlm.1 | 6jln.1 | 6jlo.1 | 6jlp.1 | 6w1o.1 | 6w1p.1 | 6w1q.1 | 6w1r.1 | 6w1t.1 | 6w1u.1 | 6w1v.1 | 7cji.1 | 7cjj.1 | 7cou.1 | 7czl.1 | 7d1t.1 | 7d1u.1 | 7dxa.1 | 7dxh.1 | 7eda.1 | 7nho.1 | 7nhp.1 | 7nhq.1 | 7rf1.1 | 7rf2.1 | 7rf3.1 | 7rf4.1 | 7rf5.1 | 7rf6.1 | 7rf7.1 | 7rf8.1 | 7yq2.1 | 7yq7.1 | 8ez5.1 | 8f4c.1 | 8f4d.1 | 8f4e.1 | 8f4f.1 | 8f4g.1 | 8f4h.1 | 8f4i.1 | 8f4j.1 | 8f4k.1 | 8gn0.1 | 8gn1.1 | 8gn2.1 | 8ir5.1 | 8ir6.1 | 8ir7.1 | 8ir8.1 | 8ir9.1 | 8ira.1 | 8irb.1 | 8irc.1 | 8ird.1 | 8ire.1 | 8irf.1 | 8irg.1 | 8irh.1 | 8iri.1