SMTL ID : 5mx2.1 (1 other biounit)

Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: N.181, H.332, E.333 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: A.336, H.337, N.338, F.339 Chain C: G.341, E.342 Ligand excluded by PLIP

35 x CLA: CHLOROPHYLL A(Non-covalent)

CLA.3: 27 residues within 4Å: Chain A: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, F.206, T.286, A.287, I.290 Chain D: L.182, L.205 Chain N: F.17 Ligands: CLA.4, CLA.12, PHO.66, CLA.67, LHG.72 12 PLIP interactions: 9 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N, Hydrophobic interactions: A:F.119, A:F.186, A:Q.187, A:I.192, A:L.193, A:F.206, A:T.286, A:I.290, D:L.182, D:L.205, N:F.17 Metal complexes: A:H.198 CLA.4: 18 residues within 4Å: Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, W.278 Chain D: V.175, I.178, F.179, F.181, L.182 Ligands: CLA.3, PHO.5, PL9.8, DGD.61, CLA.67, LMG.74 11 PLIP interactions: 6 interactions with chain D, 4 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: D:I.178, D:I.178, D:F.179, D:F.181, D:L.182, D:L.182, A:V.202, A:F.206, A:L.210, A:W.278 Metal complexes: H2O.2 CLA.6: 26 residues within 4Å: Chain A: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121 Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.16 Ligands: BCR.7, LMG.43, CLA.48, CLA.49, BCR.58, DGD.59 19 PLIP interactions: 6 interactions with chain H, 13 interactions with chain A, Hydrophobic interactions: H:V.8, H:Y.9, H:V.11, H:V.12, H:F.15, H:F.15, A:P.39, A:T.40, A:F.93, A:P.95, A:I.96, A:W.97, A:W.97, A:L.114, A:F.117, A:L.121 Hydrogen bonds: A:I.96 Salt bridges: A:H.118 Metal complexes: A:H.118 CLA.12: 20 residues within 4Å: Chain A: F.48, M.172, I.176, T.179, F.180, F.182, M.183 Chain D: M.198, V.201, A.202, L.205, G.206, L.209 Ligands: CLA.3, SQD.11, PHO.66, CLA.67, PL9.70, LHG.72, LHG.89 7 PLIP interactions: 3 interactions with chain A, 3 interactions with chain D, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.48, A:F.180, A:F.182, D:V.201, D:V.201, D:L.209 Metal complexes: H2O.2 CLA.15: 25 residues within 4Å: Chain B: G.189, F.190, P.192, G.197, A.200, H.201, A.204, A.205, V.208, F.246, F.247, F.250, V.251 Chain D: L.162 Chain G: F.38, F.41, I.45, L.46, Y.49 Ligands: CLA.16, CLA.18, CLA.22, CLA.81, BCR.82, DGD.83 16 PLIP interactions: 10 interactions with chain B, 5 interactions with chain G, 1 interactions with chain D, Hydrophobic interactions: B:F.190, B:A.200, B:H.201, B:A.205, B:V.208, B:F.246, B:F.247, B:F.250, G:F.38, G:F.41, G:I.45, G:I.45, G:Y.49, D:L.162 pi-Stacking: B:F.190 Metal complexes: B:H.201 CLA.16: 27 residues within 4Å: Chain B: R.68, L.69, A.146, L.149, C.150, F.153, M.166, V.198, H.201, H.202, F.247, A.248, V.251, V.252, T.262 Chain G: M.35, F.38, L.39, L.42 Ligands: CLA.15, CLA.17, CLA.18, CLA.19, CLA.21, CLA.22, CLA.23, BCR.82 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain G, Hydrophobic interactions: B:L.149, B:F.153, B:F.247, B:F.247, B:V.251, B:V.252, G:L.39, G:L.39, G:L.42 Hydrogen bonds: B:R.68 Salt bridges: B:R.68 pi-Stacking: B:F.153 pi-Cation interactions: B:H.201 Metal complexes: B:H.202 CLA.17: 23 residues within 4Å: Chain B: W.33, F.61, F.65, R.68, L.145, L.149, V.245, A.248, A.249, V.252, F.451, H.455, F.458, A.459, F.462 Ligands: CLA.16, CLA.18, CLA.19, CLA.20, CLA.25, CLA.26, CLA.28, LFA.36 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:W.33, B:F.61, B:F.65, B:F.65, B:L.145, B:L.145, B:V.245, B:A.248, B:A.249, B:V.252, B:F.458, B:F.458, B:F.462, B:F.462 Salt bridges: B:R.68 Metal complexes: B:H.455 CLA.18: 26 residues within 4Å: Chain B: T.27, V.30, A.31, W.33, A.34, A.38, V.62, F.65, M.66, R.68, L.69, V.96, H.100, L.103, L.143, A.146, G.147, A.205, G.209 Ligands: CLA.15, CLA.16, CLA.17, CLA.19, CLA.23, CLA.25, CLA.28 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:T.27, B:V.30, B:A.31, B:W.33, B:A.34, B:L.69, B:V.96, B:L.103, B:L.143 Hydrogen bonds: B:M.66 Salt bridges: B:R.68 Metal complexes: B:H.100 CLA.19: 22 residues within 4Å: Chain B: L.69, V.71, F.90, W.91, V.96, L.98, A.99, H.100, L.106, L.149, G.152, F.153, F.156, H.157, F.162, G.163, P.164 Ligands: CLA.16, CLA.17, CLA.18, BCR.32, LFA.36 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:L.69, B:V.71, B:W.91, B:W.91, B:W.91, B:L.98, B:A.99, B:L.106, B:L.149, B:F.153, B:F.156, B:F.162 Metal complexes: B:H.157 CLA.20: 25 residues within 4Å: Chain B: W.33, M.37, Y.40, Q.58, G.59, M.60, F.61, L.324, F.325, T.327, G.328, P.329, P.447, W.450, A.454 Chain D: M.281 Chain K: L.27, F.31 Chain L: F.14 Ligands: CLA.17, CLA.26, BCR.30, BCR.31, LMG.33, LHG.71 17 PLIP interactions: 13 interactions with chain B, 1 interactions with chain L, 2 interactions with chain K, 1 Ligand-Water interactions, Hydrophobic interactions: B:W.33, B:Y.40, B:F.61, B:F.61, B:F.61, B:F.325, B:P.447, B:W.450, B:W.450, B:A.454, L:F.14, K:L.27, K:F.31 Hydrogen bonds: B:Y.40, B:G.328 pi-Stacking: B:F.61 Metal complexes: H2O.6 CLA.21: 25 residues within 4Å: Chain B: L.229, T.236, S.239, S.240, A.243, F.246, F.247, F.463, H.466, I.467, L.474 Chain D: F.120, I.123, M.126, L.127, F.130 Chain G: L.39, L.43, L.46 Ligands: CLA.16, CLA.22, CLA.23, LFA.39, CLA.68, DGD.83 18 PLIP interactions: 9 interactions with chain B, 6 interactions with chain D, 3 interactions with chain G, Hydrophobic interactions: B:A.243, B:F.246, B:F.247, B:F.463, B:I.467, B:L.474, D:F.120, D:F.120, D:I.123, D:M.126, D:L.127, D:F.130, G:L.39, G:L.43, G:L.46 Hydrogen bonds: B:S.239 Salt bridges: B:H.466 Metal complexes: B:H.466 CLA.22: 21 residues within 4Å: Chain B: F.139, V.208, A.212, F.215, H.216, V.219, R.220, P.221, P.222, L.225, L.229, M.231 Chain G: T.27, T.28, M.31, F.34 Ligands: CLA.15, CLA.16, CLA.21, CLA.23, BCR.82 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain G, Hydrophobic interactions: B:F.139, B:V.208, B:A.212, B:F.215, B:F.215, B:L.229, G:M.31, G:F.34, G:F.34 Salt bridges: B:H.216 Metal complexes: B:H.216 Hydrogen bonds: G:T.27 CLA.23: 17 residues within 4Å: Chain B: L.135, F.139, H.142, L.143, L.145, A.146, M.231, V.237, S.240, S.241, A.244 Ligands: CLA.16, CLA.18, CLA.21, CLA.22, CLA.25, CLA.28 8 PLIP interactions: 7 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:L.135, B:F.139, B:F.139, B:L.145, B:M.231, B:V.237, B:A.244 Metal complexes: H2O.5 CLA.24: 21 residues within 4Å: Chain B: W.5, Y.6, R.7, V.8, H.9, T.10, L.238, I.242, F.458, L.461, F.462, G.465, W.468, H.469, R.472 Chain L: F.21 Ligands: CLA.25, CLA.26, CLA.27, LHG.71, LHG.89 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain L, Hydrophobic interactions: B:W.5, B:W.5, B:L.238, B:L.238, B:F.458, B:F.462, B:F.462, B:W.468, L:F.21 Hydrogen bonds: B:H.9 Salt bridges: B:H.9, B:H.469, B:R.472 pi-Stacking: B:W.468 Metal complexes: B:H.469 CLA.25: 20 residues within 4Å: Chain B: H.9, L.12, I.13, L.19, A.22, H.23, H.26, T.27, I.234, V.237, L.238, S.241, V.245 Ligands: CLA.17, CLA.18, CLA.23, CLA.24, CLA.26, CLA.27, CLA.28 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:H.9, B:L.12, B:L.12, B:I.13, B:L.19, B:A.22, B:H.23, B:H.26, B:T.27, B:I.234, B:V.237, B:L.238 Hydrogen bonds: B:S.241 Salt bridges: B:H.23 Metal complexes: B:H.23 CLA.26: 14 residues within 4Å: Chain B: H.9, H.26, V.30, W.33, F.462 Ligands: CLA.17, CLA.20, CLA.24, CLA.25, CLA.27, BCR.30, BCR.31, LMG.33, LHG.71 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:V.30, B:W.33, B:W.33, B:F.462 Salt bridges: B:H.9 Metal complexes: B:H.26 CLA.27: 20 residues within 4Å: Chain B: V.8, H.9, V.11, L.12, A.22, M.25, W.115 Chain K: Q.8, V.10 Chain L: L.13, F.21, L.25 Ligands: CLA.24, CLA.25, CLA.26, BCR.30, LMG.33, SQD.88, LHG.89, LFA.91 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain L, Hydrophobic interactions: B:V.8, B:L.12, B:M.25, B:W.115, L:L.13, L:F.21, L:L.25 Metal complexes: B:H.9 CLA.28: 21 residues within 4Å: Chain B: I.20, H.23, L.24, T.27, L.122, L.133, M.138, I.141, H.142, L.145 Chain G: L.7, L.11, L.14, N.15 Ligands: CLA.17, CLA.18, CLA.23, CLA.25, CLA.29, BCR.32, LFA.36 13 PLIP interactions: 7 interactions with chain B, 6 interactions with chain G, Hydrophobic interactions: B:I.20, B:L.122, B:L.133, B:I.141, B:L.145, G:L.7, G:L.11, G:L.11, G:L.14, G:L.14, G:N.15 Hydrogen bonds: B:H.23 Metal complexes: B:H.142 CLA.29: 12 residues within 4Å: Chain B: I.20, L.24, A.110, W.113, H.114, L.120, L.122 Chain G: T.5, L.7, G.8 Ligands: CLA.28, BCR.32 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain G, Hydrophobic interactions: B:I.20, B:L.24, B:W.113, B:W.113, B:L.120, B:L.122 pi-Stacking: B:W.113 Metal complexes: B:H.114 Hydrogen bonds: G:T.5 Water bridges: G:W.6 CLA.44: 23 residues within 4Å: Chain C: T.82, L.83, L.156, G.159, A.160, L.163, W.211, I.212, V.221, H.225, I.228, A.266, M.269, M.270, I.273, F.277, V.284, Y.285 Ligands: CLA.45, CLA.46, CLA.49, CLA.50, BCR.58 10 PLIP interactions: 10 interactions with chain C, Hydrophobic interactions: C:A.160, C:L.163, C:W.211, C:I.212, C:I.228, C:A.266, C:I.273, C:F.277, C:V.284 Metal complexes: C:H.225 CLA.45: 24 residues within 4Å: Chain C: W.51, I.75, H.79, L.83, W.85, G.159, L.162, K.166, F.170, L.267, M.270, A.274, V.278, Y.285, L.414, H.418, L.421, F.425 Ligands: CLA.44, CLA.46, CLA.47, CLA.52, CLA.53, CLA.55 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:W.51, C:W.51, C:I.75, C:L.83, C:W.85, C:L.162, C:K.166, C:K.166, C:F.170, C:A.274, C:L.414, C:L.421, C:L.421, C:F.425 Hydrogen bonds: C:Y.285 Salt bridges: C:H.79, C:H.418 Metal complexes: C:H.418 CLA.46: 21 residues within 4Å: Chain C: I.48, V.49, A.52, T.56, L.76, H.79, I.80, L.83, W.85, V.102, H.106, L.267, M.270 Ligands: CLA.44, CLA.45, CLA.50, CLA.52, CLA.53, CLA.55, CLA.56, LFA.63 8 PLIP interactions: 8 interactions with chain C, Hydrophobic interactions: C:V.49, C:A.52, C:L.83, C:W.85, C:V.102, C:L.267 Salt bridges: C:H.79 Metal complexes: C:H.106 CLA.47: 20 residues within 4Å: Chain A: F.197, F.285 Chain C: W.51, M.55, F.58, Q.72, G.73, I.75, W.413, S.417, F.424 Chain J: P.26, V.30 Ligands: CLA.45, CLA.51, CLA.53, DGD.60, DGD.61, LMG.62, LHG.73 12 PLIP interactions: 3 interactions with chain A, 7 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.197, A:F.285, A:F.285, C:F.58, C:W.413, C:W.413, C:W.413, C:F.424, C:F.424, C:F.424, J:V.30 Metal complexes: H2O.8 CLA.48: 24 residues within 4Å: Chain A: F.33, I.36, L.121, C.125, M.127, G.128, W.131 Chain C: F.252, S.261, Y.262, G.265, A.266, M.269, L.426, H.429, L.430, A.433, R.437 Chain H: V.16, F.23 Ligands: CLA.6, LMG.43, CLA.50, BCR.58 15 PLIP interactions: 9 interactions with chain A, 5 interactions with chain C, 1 interactions with chain H, Hydrophobic interactions: A:F.33, A:F.33, A:I.36, A:L.121, A:L.121, A:W.131, A:W.131, A:W.131, A:W.131, C:Y.262, C:L.426, C:L.430, H:F.23 Salt bridges: C:R.437 Metal complexes: C:H.429 CLA.49: 21 residues within 4Å: Chain C: L.149, L.153, L.201, W.211, I.231, G.235, W.238, H.239, T.242, T.243, P.244, F.245, W.247, A.248, F.252 Ligands: CLA.6, CLA.44, CLA.50, BCR.58, DGD.59, LMG.64 8 PLIP interactions: 8 interactions with chain C, Hydrophobic interactions: C:L.153, C:L.153, C:L.201, C:L.201, C:W.211 Hydrogen bonds: C:F.245 Salt bridges: C:H.239 Metal complexes: C:H.239 CLA.50: 20 residues within 4Å: Chain C: M.145, T.146, L.149, H.152, L.153, L.156, C.232, F.252, W.254, Y.259, Y.262, S.263, A.266, M.270 Ligands: CLA.44, CLA.46, CLA.48, CLA.49, CLA.52, BCR.58 11 PLIP interactions: 10 interactions with chain C, 1 Ligand-Water interactions, Hydrophobic interactions: C:M.145, C:T.146, C:L.149, C:L.156, C:F.252, C:W.254, C:Y.259, C:Y.259, C:Y.262 Hydrogen bonds: C:H.152 Metal complexes: H2O.7 CLA.51: 23 residues within 4Å: Chain C: F.21, W.24, A.25, G.26, N.27, A.28, E.257, L.260, L.264, F.424, F.425, G.428, W.431, H.432, R.435 Ligands: SQD.9, CLA.47, CLA.52, CLA.53, CLA.54, DGD.60, DGD.61, LHG.73 12 PLIP interactions: 12 interactions with chain C, Hydrophobic interactions: C:L.260, C:L.260, C:L.264, C:F.425, C:F.425, C:W.431 Hydrogen bonds: C:G.26, C:N.27 Salt bridges: C:H.432, C:R.435 pi-Stacking: C:W.431 Metal complexes: C:H.432 CLA.52: 25 residues within 4Å: Chain C: N.27, L.30, I.31, L.37, A.40, H.41, H.44, Y.137, W.139, M.145, I.148, G.256, E.257, Y.259, L.260, S.263, L.264, L.267 Ligands: CLA.45, CLA.46, CLA.50, CLA.51, CLA.53, CLA.54, CLA.55 14 PLIP interactions: 14 interactions with chain C, Hydrophobic interactions: C:N.27, C:L.30, C:I.31, C:L.37, C:A.40, C:H.44, C:Y.137, C:W.139, C:W.139, C:I.148, C:Y.259, C:L.260 Hydrogen bonds: C:S.263 Metal complexes: C:H.41 CLA.53: 20 residues within 4Å: Chain C: N.27, H.44, L.47, I.48, W.51, L.267, L.421, F.424, F.425 Chain J: P.29, V.30, L.33 Ligands: CLA.45, CLA.46, CLA.47, CLA.51, CLA.52, CLA.54, LMG.62, LHG.73 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain J, Hydrophobic interactions: C:L.47, C:I.48, C:W.51, C:L.267, C:L.421, C:F.424, C:F.425, J:P.29, J:V.30, J:L.33 Hydrogen bonds: C:N.27 Metal complexes: C:H.44 CLA.54: 25 residues within 4Å: Chain C: W.23, G.26, N.27, R.29, L.30, L.33, K.36, A.40, F.115, I.122 Chain J: F.32, L.33, A.36, W.39, Q.40 Chain Q: I.35, L.39, N.45, L.46 Chain S: V.20, A.28 Ligands: CLA.51, CLA.52, CLA.53, BCR.87 17 PLIP interactions: 2 interactions with chain S, 6 interactions with chain C, 2 interactions with chain Q, 7 interactions with chain J, Hydrophobic interactions: S:V.20, S:A.28, C:W.23, C:L.30, C:L.30, C:F.115, C:I.122, Q:I.35, Q:L.46, J:F.32, J:L.33, J:A.36, J:W.39, J:Q.40 Hydrogen bonds: C:R.29 pi-Stacking: J:W.39, J:W.39 CLA.55: 20 residues within 4Å: Chain C: L.38, H.41, A.45, L.113, F.134, F.135, Y.137, I.148, F.151, H.152, I.154, V.155, I.158, G.159, L.162 Ligands: CLA.45, CLA.46, CLA.52, CLA.56, BCR.57 13 PLIP interactions: 13 interactions with chain C, Hydrophobic interactions: C:L.38, C:H.41, C:F.135, C:Y.137, C:I.148, C:I.148, C:F.151, C:F.151, C:I.154, C:V.155, C:I.158, C:L.162 Metal complexes: C:H.152 CLA.56: 15 residues within 4Å: Chain C: L.38, V.42, V.112, L.113, G.116, Y.119, H.120, P.125, L.128, Y.131, F.135 Ligands: CLA.46, CLA.55, BCR.57, LFA.63 11 PLIP interactions: 11 interactions with chain C, Hydrophobic interactions: C:V.42, C:V.42, C:V.112, C:L.113, C:Y.119, C:L.128, C:Y.131, C:F.135, C:F.135, C:F.135 Metal complexes: C:H.120 CLA.67: 28 residues within 4Å: Chain A: M.183, F.206 Chain D: L.45, W.48, P.149, V.152, F.153, S.155, V.156, F.181, L.182, F.185, Q.186, W.191, T.192, H.197, G.200, V.201, V.204, L.205, S.282, A.283, V.286 Ligands: CLA.3, CLA.4, PHO.5, CLA.12, LMG.74 17 PLIP interactions: 15 interactions with chain D, 2 interactions with chain A, Hydrophobic interactions: D:L.45, D:W.48, D:V.152, D:F.153, D:F.181, D:L.182, D:F.185, D:Q.186, D:W.191, D:V.201, D:V.204, D:V.204, D:L.205, A:F.206, A:F.206 pi-Stacking: D:W.191 Metal complexes: D:H.197 CLA.68: 26 residues within 4Å: Chain D: I.35, L.36, P.39, C.40, L.43, L.89, L.90, L.91, L.92, W.93, W.104, G.109, T.112, F.113, L.116, H.117 Chain G: V.40, L.43 Chain R: F.11, G.13, L.14, A.18, V.20 Ligands: CLA.21, SQD.76, LFA.78 18 PLIP interactions: 1 interactions with chain G, 12 interactions with chain D, 5 interactions with chain R, Hydrophobic interactions: G:V.40, D:L.36, D:P.39, D:L.43, D:L.92, D:W.93, D:W.93, D:L.116, R:F.11, R:L.14, R:L.14, R:A.18, R:V.20 Hydrogen bonds: D:L.92 Salt bridges: D:H.117 pi-Stacking: D:F.113, D:F.113 Metal complexes: D:H.117 CLA.81: 10 residues within 4Å: Chain B: W.185, G.186, P.187, F.190 Chain G: F.41, I.44, L.55 Ligands: CLA.15, LMG.35, BCR.82 8 PLIP interactions: 4 interactions with chain G, 3 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: G:F.41, G:F.41, G:I.44, G:L.55, B:W.185, B:P.187, B:F.190 Metal complexes: H2O.5

2 x PHO: PHEOPHYTIN A(Non-covalent)

PHO.5: 29 residues within 4Å: Chain A: F.206, A.209, L.210, A.213, M.214, F.255, L.258 Chain D: A.41, A.44, L.45, W.48, I.114, G.118, G.121, L.122, F.125, Q.129, N.142, F.146, P.149, F.153, F.173, G.174, V.175, P.275, L.279 Ligands: CLA.4, PL9.8, CLA.67 26 PLIP interactions: 20 interactions with chain D, 6 interactions with chain A Hydrophobic interactions: D:A.41, D:L.45, D:W.48, D:W.48, D:I.114, D:L.122, D:L.122, D:F.125, D:F.125, D:F.146, D:P.149, D:F.153, D:F.173, D:V.175, D:P.275, D:L.279, D:L.279, A:F.206, A:A.209, A:L.210, A:L.210, A:L.210, A:A.213 Hydrogen bonds: D:Q.129, D:N.142 pi-Stacking: D:F.146 PHO.66: 28 residues within 4Å: Chain A: L.41, A.44, T.45, F.48, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, L.174, G.175, V.205, P.279, V.283 Chain D: L.205, A.208, L.209, A.212, I.213, W.253, F.257 Ligands: CLA.3, SQD.11, CLA.12, PL9.70, LHG.72 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:F.119, A:Y.126, A:A.146, A:Y.147, A:P.150, A:F.158, A:V.205, A:P.279, D:L.205, D:L.209, D:A.212 Hydrogen bonds: A:Y.126, A:Q.130 pi-Stacking: A:Y.147

11 x BCR: BETA-CAROTENE(Non-covalent)

BCR.7: 20 residues within 4Å: Chain A: V.35, I.38, P.39, L.42, A.43, I.46, C.47, I.50, A.51, A.54, A.55, I.96, W.105, L.106, P.111 Chain H: F.15 Ligands: CLA.6, LFA.10, SQD.11, LFA.84 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain H Hydrophobic interactions: A:V.35, A:I.38, A:P.39, A:L.42, A:I.46, A:I.50, A:A.51, A:A.54, A:I.96, A:W.105, A:L.106, A:P.111, H:F.15 BCR.30: 12 residues within 4Å: Chain B: M.25, L.29, W.115 Chain L: A.10, L.13 Ligands: CLA.20, CLA.26, CLA.27, BCR.31, LMG.33, SQD.88, LHG.89 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain L Hydrophobic interactions: B:L.29, B:L.29, B:W.115, B:W.115, L:A.10, L:L.13 BCR.31: 14 residues within 4Å: Chain B: L.29, G.32, W.33, S.36, I.101, V.102, S.104, G.105, L.109 Ligands: CLA.20, CLA.26, BCR.30, LMG.33, SQD.88 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.29, B:W.33, B:I.101, B:L.109 BCR.32: 11 residues within 4Å: Chain B: L.106, L.107, L.109, A.110, C.112, W.113, V.116 Ligands: CLA.19, CLA.28, CLA.29, LFA.36 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.106, B:L.107, B:V.116, B:V.116 BCR.57: 15 residues within 4Å: Chain C: F.100, V.101, V.104, I.108, S.109, V.112, L.113, F.135 Chain J: Y.15 Chain S: V.51, G.55, N.58, F.59 Ligands: CLA.55, CLA.56 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain S Hydrophobic interactions: C:F.100, C:V.101, C:V.104, C:V.104, C:I.108, C:V.112, C:L.113, C:F.135, S:F.59 BCR.58: 19 residues within 4Å: Chain C: I.197, Y.200, L.201, I.212, V.215, D.220, V.221, G.224, H.225, I.228, F.252, M.269 Chain H: V.20, L.24 Ligands: CLA.6, CLA.44, CLA.48, CLA.49, CLA.50 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain H Hydrophobic interactions: C:I.197, C:Y.200, C:L.201, C:I.212, C:V.215, C:I.228, C:F.252, H:V.20, H:L.24 BCR.69: 17 residues within 4Å: Chain D: Y.42, L.43, G.46, G.47, L.49, T.50, F.101, W.104, F.113 Chain F: P.29, T.30, F.33, L.34, I.37 Chain I: V.21, V.25 Ligands: LMG.74 13 PLIP interactions: 7 interactions with chain F, 5 interactions with chain D, 1 interactions with chain I Hydrophobic interactions: F:P.29, F:T.30, F:F.33, F:F.33, F:F.33, F:L.34, F:I.37, D:Y.42, D:L.49, D:F.101, D:W.104, D:F.113, I:V.21 BCR.82: 14 residues within 4Å: Chain G: M.31, F.34, M.35, L.37, F.38, F.41, I.44, L.55 Chain R: T.2, L.7 Ligands: CLA.15, CLA.16, CLA.22, CLA.81 9 PLIP interactions: 8 interactions with chain G, 1 interactions with chain R Hydrophobic interactions: G:L.37, G:F.38, G:F.38, G:F.38, G:F.41, G:F.41, G:I.44, G:L.55, R:L.7 BCR.86: 19 residues within 4Å: Chain C: F.50 Chain I: A.14, T.15, M.19 Chain J: L.21, L.25, I.28, L.31, A.34, V.38, A.41 Chain Q: I.28, G.29, G.32, P.33 Chain S: S.16, F.17 Ligands: SQD.9, BCR.87 10 PLIP interactions: 6 interactions with chain J, 1 interactions with chain Q, 1 interactions with chain I, 1 interactions with chain C, 1 interactions with chain S Hydrophobic interactions: J:L.21, J:I.28, J:L.31, J:A.34, J:V.38, J:A.41, Q:I.28, I:A.14, C:F.50, S:F.17 BCR.87: 20 residues within 4Å: Chain C: A.43, G.46, L.47, F.50, I.108, S.110, A.111, G.114, V.118, A.121 Chain J: Y.15, F.18, F.32, L.35 Chain S: L.9, L.12, S.16, V.20 Ligands: CLA.54, BCR.86 18 PLIP interactions: 3 interactions with chain S, 8 interactions with chain C, 7 interactions with chain J Hydrophobic interactions: S:L.9, S:L.12, S:V.20, C:A.43, C:L.47, C:F.50, C:F.50, C:I.108, C:A.111, C:V.118, C:A.121, J:Y.15, J:Y.15, J:F.18, J:F.32, J:F.32, J:F.32, J:L.35 BCR.92: 10 residues within 4Å: Chain A: L.28 Chain N: I.4, F.8, A.11, I.14, A.15, F.18, I.21, F.22 Ligands: SQD.11 11 PLIP interactions: 10 interactions with chain N, 1 interactions with chain A Hydrophobic interactions: N:I.4, N:F.8, N:A.11, N:I.14, N:A.15, N:F.18, N:F.18, N:I.21, N:F.22, N:F.22, A:L.28

2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)

PL9.8: 25 residues within 4Å: Chain A: F.211, H.215, L.218, I.248, H.252, F.255, A.263, S.264, F.265, L.271, F.274, L.275 Chain D: V.30, F.38, P.39, Y.42, L.45 Chain F: T.25, L.26 Chain R: T.24, L.28 Ligands: CLA.4, PHO.5, SQD.76, LHG.79 18 PLIP interactions: 10 interactions with chain A, 1 interactions with chain F, 5 interactions with chain D, 2 interactions with chain R Hydrophobic interactions: A:F.211, A:L.218, A:H.252, A:F.255, A:F.265, A:L.271, A:L.271, A:F.274, A:L.275, F:L.26, D:V.30, D:F.38, D:P.39, D:Y.42, D:L.45, R:T.24, R:L.28 Hydrogen bonds: A:F.265 PL9.70: 30 residues within 4Å: Chain A: F.48, F.52, I.77, I.176 Chain D: M.198, M.199, A.202, L.209, L.210, H.214, T.217, Y.244, M.246, A.249, W.253, I.259, A.260, F.261, L.267, F.270, F.273, V.274 Chain K: L.23, V.26, L.29 Chain N: F.10 Ligands: CLA.12, PHO.66, LHG.72, LHG.89 26 PLIP interactions: 16 interactions with chain D, 3 interactions with chain K, 2 interactions with chain N, 5 interactions with chain A Hydrophobic interactions: D:M.199, D:L.209, D:T.217, D:Y.244, D:A.249, D:W.253, D:F.261, D:F.261, D:F.261, D:L.267, D:F.270, D:F.273, D:V.274, K:L.23, K:V.26, K:L.29, N:F.10, N:F.10, A:F.48, A:F.52, A:F.52, A:I.77, A:I.77 Hydrogen bonds: D:H.214, D:F.261 pi-Stacking: D:F.261

4 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)

SQD.9: 21 residues within 4Å: Chain A: L.200, A.203, F.265, N.267, S.270, F.273, F.274, A.277, W.278, V.281 Chain C: Q.16, A.22, W.23, W.24 Chain D: F.232, R.233 Chain J: L.33, F.37 Ligands: CLA.51, LHG.73, BCR.86 19 PLIP interactions: 11 interactions with chain A, 3 interactions with chain C, 4 interactions with chain J, 1 interactions with chain D Hydrophobic interactions: A:A.203, A:F.265, A:F.273, A:F.274, A:A.277, A:W.278, A:W.278, A:W.278, A:V.281, C:W.23, C:W.24, J:L.33, J:F.37, J:F.37, J:F.37 Hydrogen bonds: A:N.267, A:S.270, C:Q.16 Salt bridges: D:R.233 SQD.11: 14 residues within 4Å: Chain A: W.20, N.26, R.27, L.28, I.38, L.42, T.45 Chain N: I.14, F.22 Ligands: BCR.7, CLA.12, PHO.66, LFA.84, BCR.92 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain N Hydrophobic interactions: A:L.28, A:L.28, A:I.38, A:I.38, A:L.42, A:T.45, N:I.14 Hydrogen bonds: A:R.27, A:L.28 SQD.76: 12 residues within 4Å: Chain D: R.24, R.26 Chain F: F.16, T.17, V.18, V.21 Chain R: T.24, I.31, D.35 Chain T: Q.30 Ligands: PL9.8, CLA.68 7 PLIP interactions: 2 interactions with chain D, 3 interactions with chain F, 1 interactions with chain T, 1 interactions with chain R Hydrogen bonds: D:R.24, F:V.18, T:Q.30 Salt bridges: D:R.26 Hydrophobic interactions: F:V.21, R:I.31 Water bridges: F:R.19 SQD.88: 10 residues within 4Å: Chain B: R.18, L.29, S.104, F.108, W.115 Chain K: N.4, R.7 Ligands: CLA.27, BCR.30, BCR.31 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain K Hydrophobic interactions: B:L.29, B:F.108 Salt bridges: B:R.18, K:R.7 Hydrogen bonds: K:N.4

19 x LFA: EICOSANE(Non-covalent)

LFA.10: 2 residues within 4Å: Chain A: W.20 Ligands: BCR.7 Ligand excluded by PLIP LFA.13: 3 residues within 4Å: Chain A: L.102, D.103 Chain M: K.95 Ligand excluded by PLIP LFA.34: 3 residues within 4Å: Chain B: W.75, L.98 Ligands: LFA.37 Ligand excluded by PLIP LFA.36: 6 residues within 4Å: Chain B: W.91, L.149 Ligands: CLA.17, CLA.19, CLA.28, BCR.32 Ligand excluded by PLIP LFA.37: 4 residues within 4Å: Chain B: W.75, E.94 Ligands: LFA.34, LFA.41 Ligand excluded by PLIP LFA.38: 9 residues within 4Å: Chain B: R.224, L.225, A.228 Chain D: F.15, D.16 Chain G: W.25, M.35 Ligands: LFA.39, LFA.77 Ligand excluded by PLIP LFA.39: 5 residues within 4Å: Chain B: A.228 Ligands: CLA.21, LFA.38, LFA.75, LFA.77 Ligand excluded by PLIP LFA.40: 2 residues within 4Å: Chain B: L.98 Ligands: LFA.41 Ligand excluded by PLIP LFA.41: 5 residues within 4Å: Chain B: L.39, L.42, A.43 Ligands: LFA.37, LFA.40 Ligand excluded by PLIP LFA.42: 2 residues within 4Å: Chain B: A.43, T.44 Ligand excluded by PLIP LFA.63: 7 residues within 4Å: Chain C: V.49, W.85, V.105, H.106, S.109 Ligands: CLA.46, CLA.56 Ligand excluded by PLIP LFA.75: 5 residues within 4Å: Chain D: K.23, F.130, R.134 Ligands: LFA.39, LFA.77 Ligand excluded by PLIP LFA.77: 6 residues within 4Å: Chain D: D.19, K.23, W.32 Ligands: LFA.38, LFA.39, LFA.75 Ligand excluded by PLIP LFA.78: 6 residues within 4Å: Chain D: W.93 Chain R: S.16, G.17, V.20, L.21 Ligands: CLA.68 Ligand excluded by PLIP LFA.84: 5 residues within 4Å: Chain A: I.96 Chain H: M.1, L.4 Ligands: BCR.7, SQD.11 Ligand excluded by PLIP LFA.85: 5 residues within 4Å: Chain I: G.26, Y.30, Y.33 Ligands: DGD.60, LMG.62 Ligand excluded by PLIP LFA.90: 1 residues within 4Å: Chain L: I.23 Ligand excluded by PLIP LFA.91: 4 residues within 4Å: Chain L: F.21, I.24, Q.28 Ligands: CLA.27 Ligand excluded by PLIP LFA.93: 6 residues within 4Å: Chain L: L.8, A.12 Chain N: M.1, I.4, T.5, F.8 Ligand excluded by PLIP

1 x FE: FE (III) ION(Non-covalent)

FE.14: 5 residues within 4Å: Chain A: H.215, H.272 Chain D: H.214, H.268 Ligands: BCT.65 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Metal complexes: A:H.215, A:H.272, D:H.214, D:H.268

6 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)

LMG.33: 20 residues within 4Å: Chain B: Y.40, T.327, G.328, P.329, K.332, F.453, A.454, V.457 Chain D: I.284 Chain K: F.35 Chain L: N.4, L.6, A.10, V.17 Ligands: CLA.20, CLA.26, CLA.27, BCR.30, BCR.31, LHG.89 14 PLIP interactions: 8 interactions with chain B, 3 interactions with chain L, 1 interactions with chain D, 2 interactions with chain K Hydrophobic interactions: B:F.453, B:A.454, B:V.457, L:A.10, L:V.17, D:I.284, K:F.35, K:F.35 Hydrogen bonds: B:Y.40, B:T.327, B:T.327, L:N.4 Water bridges: B:K.332, B:K.332 LMG.35: 7 residues within 4Å: Chain B: P.183, E.184, W.185, A.204, I.207, V.208 Ligands: CLA.81 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.185, B:A.204, B:I.207, B:I.207, B:V.208 Hydrogen bonds: B:P.183, B:E.184, B:W.185 LMG.43: 22 residues within 4Å: Chain A: F.93, W.97, E.98, F.117, L.120, L.121, S.124, F.155 Chain C: L.202, K.203, S.204, P.205, F.206, E.209, W.211, M.269, F.272 Chain H: K.5, Y.9 Ligands: CLA.6, CLA.48, DGD.59 19 PLIP interactions: 4 interactions with chain H, 6 interactions with chain A, 9 interactions with chain C Hydrogen bonds: H:K.5, H:K.5, H:Y.9, H:Y.9, A:W.97, A:E.98, C:E.209 Hydrophobic interactions: A:F.117, A:L.120, A:L.121, A:F.155, C:F.206, C:F.206, C:W.211, C:W.211, C:W.211, C:F.272 Water bridges: C:S.204, C:S.204 LMG.62: 9 residues within 4Å: Chain C: F.58, H.62, Q.72 Chain J: D.23, V.27 Ligands: CLA.47, CLA.53, DGD.60, LFA.85 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:H.62 LMG.64: 5 residues within 4Å: Chain C: L.192, D.193, P.194, W.227 Ligands: CLA.49 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.192, C:P.194, C:W.227 LMG.74: 19 residues within 4Å: Chain D: Y.67, G.70, C.71, N.72, F.73 Chain F: L.26, A.27, T.30, I.37, M.40, Q.41 Chain I: F.28, G.31, A.32, L.36 Ligands: CLA.4, DGD.61, CLA.67, BCR.69 12 PLIP interactions: 7 interactions with chain D, 2 interactions with chain I, 3 interactions with chain F Hydrophobic interactions: D:F.73, D:F.73, D:F.73, D:F.73, F:A.27 Hydrogen bonds: D:F.73, I:G.31, F:M.40, F:Q.41 Water bridges: D:G.70, D:N.72, I:L.36

4 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)

DGD.59: 29 residues within 4Å: Chain A: L.91, S.148, F.155, I.160, I.163 Chain C: P.205, F.206, G.207, G.208, E.209, G.210, W.211, V.213, S.214, V.215, N.216, F.272, C.276, F.280, N.281, N.282, T.283, D.348, F.349, R.350, L.426 Ligands: CLA.6, LMG.43, CLA.49 20 PLIP interactions: 16 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:P.205, C:F.206, C:W.211, C:F.272, C:F.272, C:L.426, A:F.155, A:F.155, A:I.160, A:I.163 Hydrogen bonds: C:F.206, C:G.208, C:N.282, C:T.283, C:T.283, C:T.283, C:D.348, C:D.348, C:R.350, C:R.350 DGD.60: 19 residues within 4Å: Chain A: F.197, L.297 Chain C: E.71, Q.72, G.73, S.394, N.406, F.407, V.408, W.413, T.416, S.417 Chain I: F.29, Y.33 Ligands: CLA.47, CLA.51, DGD.61, LMG.62, LFA.85 13 PLIP interactions: 7 interactions with chain C, 3 interactions with chain I, 3 interactions with chain A Hydrogen bonds: C:S.394, C:N.406, C:N.406, C:V.408, C:V.408 Water bridges: C:Y.70, C:G.73, I:Y.33, I:Y.33 Hydrophobic interactions: I:F.29, A:F.197, A:F.197, A:L.297 DGD.61: 27 residues within 4Å: Chain A: P.196, Q.199, L.200, F.300, N.301, F.302, S.305 Chain C: N.393, S.394, V.395, N.403, S.404, N.406 Chain D: L.74 Chain I: F.29, A.32, Y.33, G.37, S.38, S.39 Chain P: Q.60 Ligands: CLA.4, CLA.47, CLA.51, DGD.60, LHG.73, LMG.74 14 PLIP interactions: 3 interactions with chain C, 2 interactions with chain P, 3 interactions with chain A, 5 interactions with chain I, 1 interactions with chain D Hydrogen bonds: C:N.393, C:N.403, C:S.404, P:Q.60, P:Q.60, A:S.305, I:Y.33, I:G.37, I:S.39 Hydrophobic interactions: A:P.196, A:L.200, I:F.29, D:L.74 Water bridges: I:G.37 DGD.83: 22 residues within 4Å: Chain B: Y.193, Y.258, Y.273, Q.274, S.277, Y.279, T.452, F.463 Chain D: G.86, H.87, I.123, V.154, L.162, L.291 Chain G: L.46, Y.49, N.50, V.60, S.61, W.62 Ligands: CLA.15, CLA.21 18 PLIP interactions: 5 interactions with chain G, 7 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: G:Y.49, G:Y.49, B:Y.258, B:T.452, B:F.463, D:I.123, D:V.154, D:L.162, D:L.162, D:L.291 Hydrogen bonds: G:N.50, G:V.60, G:S.61, B:Y.193, B:Y.193, B:Y.273, B:S.277, D:H.87

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.65: 9 residues within 4Å: Chain A: H.215, E.244, Y.246, H.272 Chain D: H.214, Y.244, K.264, H.268 Ligands: FE.14 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:H.214, A:Y.246

5 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.71: 21 residues within 4Å: Chain A: S.232, N.234 Chain B: W.5, Y.6, R.7, L.461, F.464, W.468 Chain D: Y.141, I.144, W.266, F.269, L.272, W.280, M.281 Chain L: F.14, P.18 Ligands: CLA.20, CLA.24, CLA.26, LHG.89 12 PLIP interactions: 6 interactions with chain B, 2 interactions with chain L, 2 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: B:W.5, B:L.461, B:F.464, L:F.14, L:P.18, D:W.280 Hydrogen bonds: B:Y.6, A:S.232, A:N.234, D:Y.141 Water bridges: B:R.7 Salt bridges: B:R.7 LHG.72: 26 residues within 4Å: Chain A: M.37, R.129 Chain D: I.256, F.257, I.259, A.260, F.261, S.262, N.263, W.266, F.270 Chain K: N.13, T.15, S.16, Y.18, L.19, L.29 Chain N: I.13, F.17, A.20, I.21 Ligands: CLA.3, CLA.12, PHO.66, PL9.70, LHG.89 24 PLIP interactions: 9 interactions with chain K, 5 interactions with chain N, 10 interactions with chain D Hydrophobic interactions: K:Y.18, K:L.19, K:L.19, K:L.29, N:I.13, N:F.17, N:F.17, N:A.20, N:I.21, D:F.257, D:I.259, D:F.261, D:F.261, D:F.270 Hydrogen bonds: K:N.13, K:N.13, K:T.15, K:S.16, D:S.262, D:S.262, D:N.263 Water bridges: K:T.15, D:S.262, D:S.262 LHG.73: 22 residues within 4Å: Chain A: R.140, W.142, A.146, L.200, F.273, A.276, W.284 Chain C: F.21, W.24, W.431, R.435 Chain D: E.219, N.220, A.229, S.230, T.231, F.232 Ligands: SQD.9, CLA.47, CLA.51, CLA.53, DGD.61 15 PLIP interactions: 4 interactions with chain D, 4 interactions with chain C, 7 interactions with chain A Hydrogen bonds: D:N.220, D:A.229, D:S.230, D:T.231, C:R.435, C:R.435 Hydrophobic interactions: C:W.24, C:W.24, A:W.142, A:A.146, A:L.200, A:F.273, A:A.276, A:W.284 Salt bridges: A:R.140 LHG.79: 12 residues within 4Å: Chain A: L.258, I.259, F.260, Y.262, A.263 Chain D: F.27, V.28 Chain E: P.9, F.10, S.11 Chain F: V.23 Ligands: PL9.8 11 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A, 4 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: D:F.27, D:F.27, D:V.28, A:I.259, A:F.260, A:A.263, E:F.10, F:V.23 Hydrogen bonds: E:F.10, E:S.11, E:S.11 LHG.89: 27 residues within 4Å: Chain A: S.232, N.234 Chain B: P.4, W.5, Y.6 Chain D: A.202, W.266, F.273 Chain K: E.11, L.12, N.13, S.16, G.20, L.22, L.23, V.26 Chain L: P.18, F.21, L.22 Ligands: CLA.12, CLA.24, CLA.27, BCR.30, LMG.33, PL9.70, LHG.71, LHG.72 17 PLIP interactions: 3 interactions with chain B, 5 interactions with chain K, 2 interactions with chain L, 3 interactions with chain D, 4 interactions with chain A Hydrophobic interactions: B:W.5, K:V.26, K:V.26, L:P.18, L:L.22, D:A.202, D:F.273, D:F.273 Hydrogen bonds: B:W.5, B:Y.6, K:E.11, K:N.13, K:S.16, A:S.232, A:S.232, A:N.234, A:Y.235

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.80: 18 residues within 4Å: Chain E: F.10, I.13, R.18, Y.19, H.23, T.26, I.27, L.30 Chain F: I.15, F.16, R.19, W.20, H.24, A.27, I.31 Chain T: A.16, A.19, I.23 18 PLIP interactions: 7 interactions with chain F, 9 interactions with chain E, 2 interactions with chain T, Hydrophobic interactions: F:I.15, F:F.16, F:A.27, E:F.10, E:I.13, E:I.13, E:T.26, E:I.27, E:I.27, T:A.19, T:I.23 Salt bridges: F:R.19, E:R.18 pi-Stacking: F:W.20, F:W.20, E:Y.19 Metal complexes: F:H.24, E:H.23

1 x HEC: HEME C(Covalent)

HEC.94: 24 residues within 4Å: Chain P: A.62, C.63, S.65, C.66, H.67, T.72, T.74, N.75, L.78, D.79, L.80, T.84, L.85, A.88, L.98, Y.101, M.102, T.107, Y.108, I.114, H.118, M.130, I.141, I.145 18 PLIP interactions: 18 interactions with chain P, Hydrophobic interactions: P:A.62, P:T.72, P:N.75, P:L.78, P:L.80, P:L.85, P:L.98, P:Y.101, P:Y.101, P:Y.101, P:I.141, P:I.145 Hydrogen bonds: P:N.75, P:D.79 Water bridges: P:Y.101 pi-Stacking: P:Y.101 Metal complexes: P:H.67, P:H.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Structural insights into the light-driven auto-assembly process of the water-oxidizing Mn4CaO5-cluster in photosystem II. Elife (2017)

Release Date

2017-08-02

Peptides

Photosystem II protein D1 1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center protein Ycf12: Q
Photosystem II reaction center X protein: R
Photosystem II reaction center protein Z: S
Photosystem II protein Y: T

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

H
I

I
J

J
K

K
L

L
M

M
O

N
T

O
U

P
V

Q
Y

R
X

S
Z

T
R

Membrane

We predict this structure to be a membrane protein.
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Photosystem II protein D1 1

Photosystem II CP47 reaction center protein

Photosystem II CP43 reaction center protein

Photosystem II D2 protein

Cytochrome b559 subunit alpha

Cytochrome b559 subunit beta

Photosystem II reaction center protein H

Photosystem II reaction center protein I

Photosystem II reaction center protein J

Photosystem II reaction center protein K

Photosystem II reaction center protein L

Photosystem II reaction center protein M

Photosystem II manganese-stabilizing polypeptide

Photosystem II reaction center protein T

Photosystem II 12 kDa extrinsic protein

Cytochrome c-550

Photosystem II reaction center protein Ycf12

Photosystem II reaction center X protein

Photosystem II reaction center protein Z

Photosystem II protein Y

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