- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-1-mer
- Ligands
- 2 x FE2: FE (II) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: N.181, H.332, E.333
- Chain D: K.307
Ligand excluded by PLIPCL.3: 5 residues within 4Å:- Chain A: H.337, N.338, F.339
- Chain C: G.335, E.336
Ligand excluded by PLIPCL.112: 4 residues within 4Å:- Chain S: N.181, H.332, E.333
- Chain V: K.307
Ligand excluded by PLIPCL.113: 5 residues within 4Å:- Chain S: H.337, N.338, F.339
- Chain U: G.335, E.336
Ligand excluded by PLIP- 70 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.4: 29 residues within 4Å:- Chain A: F.119, Y.147, P.150, L.151, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, A.286, A.287, I.290
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.5, CLA.6, PHO.7, CLA.76, LHG.80
16 PLIP interactions:13 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N,- Hydrophobic interactions: A:F.119, A:F.182, A:F.186, A:Q.187, A:I.192, A:I.192, A:L.193, A:V.205, A:F.206, A:F.206, A:I.290, D:L.172, D:L.195, N:F.17
- Water bridges: A:I.290
- Metal complexes: A:H.198
CLA.5: 20 residues within 4Å:- Chain A: V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183
- Chain D: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.4, PHO.7, SQD.12, CLA.76, PL9.79, LHG.80, LHG.99
6 PLIP interactions:4 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.157, A:F.158, A:F.180, A:F.182, D:V.191
- Metal complexes: H2O.4
CLA.6: 21 residues within 4Å:- Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, F.260, W.278
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.4, PL9.14, PHO.16, DGD.69, CLA.76, LMG.85, LHG.86
14 PLIP interactions:7 interactions with chain D, 6 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: D:F.147, D:F.147, D:I.168, D:F.169, D:F.171, D:L.172, D:L.172, A:V.202, A:F.206, A:L.210, A:F.260, A:W.278
- pi-Stacking: A:F.206
- Metal complexes: H2O.5
CLA.8: 25 residues within 4Å:- Chain A: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.20
- Ligands: BCR.9, LMG.19, CLA.57, CLA.58, DGD.67
20 PLIP interactions:14 interactions with chain A, 6 interactions with chain H,- Hydrophobic interactions: A:I.36, A:P.39, A:P.39, A:T.40, A:F.93, A:P.95, A:I.96, A:W.97, A:W.97, A:F.117, A:L.121, H:V.8, H:V.11, H:V.12, H:F.15, H:F.15, H:V.20
- Hydrogen bonds: A:I.96
- Salt bridges: A:H.118
- Metal complexes: A:H.118
CLA.22: 9 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, I.43, L.54
- Ligands: CLA.23, BCR.91
9 PLIP interactions:4 interactions with chain B, 4 interactions with chain G, 1 Ligand-Water interactions,- Hydrophobic interactions: B:W.184, B:P.186, B:F.189, B:F.189, G:F.40, G:F.40, G:I.43, G:L.54
- Metal complexes: H2O.8
CLA.23: 23 residues within 4Å:- Chain B: G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.246, F.249, V.250
- Chain D: V.144, L.148, I.149
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.22, CLA.24, CLA.26
20 PLIP interactions:12 interactions with chain B, 5 interactions with chain G, 3 interactions with chain D,- Hydrophobic interactions: B:F.189, B:F.189, B:F.189, B:A.199, B:H.200, B:A.204, B:V.207, B:V.207, B:F.246, B:F.249, B:F.249, G:F.37, G:F.40, G:I.44, G:L.45, D:V.144, D:L.148, D:I.149
- Metal complexes: B:H.200
- pi-Stacking: G:F.40
CLA.24: 19 residues within 4Å:- Chain B: R.67, L.68, A.145, C.149, F.152, H.200, H.201, F.246, A.247, V.250, V.251, T.261
- Chain G: L.41
- Ligands: CLA.23, CLA.25, CLA.26, CLA.27, CLA.29, CLA.31
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain G,- Hydrophobic interactions: B:L.68, B:F.152, B:F.152, B:F.152, B:F.246, B:A.247, B:V.250, B:V.251, G:L.41
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.25: 24 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.144, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.24, CLA.26, CLA.28, CLA.32, CLA.33, CLA.34, CLA.36, CLA.37, UNL.47
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:F.64, B:L.144, B:L.148, B:V.244, B:A.247, B:V.251, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.26: 28 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, C.149, A.204
- Ligands: CLA.23, CLA.24, CLA.25, CLA.27, CLA.30, CLA.31, CLA.33, CLA.36, BCR.40, UNL.47
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:T.26, B:V.29, B:A.30, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142, B:A.145
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.27: 25 residues within 4Å:- Chain B: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.24, CLA.26, CLA.37, BCR.40, UNL.47, SQD.123, UNL.126
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:L.68, B:V.70, B:W.90, B:A.98, B:V.101, B:L.105, B:L.105, B:L.148, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.28: 26 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain D: M.271
- Chain K: F.31
- Chain L: F.14
- Ligands: LHG.20, CLA.25, CLA.34, BCR.38, BCR.39, LMG.42, BCR.219
10 PLIP interactions:1 interactions with chain K, 1 interactions with chain L, 7 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: K:F.31, L:F.14, B:Y.39, B:F.60, B:F.324, B:W.449
- Hydrogen bonds: B:Y.39, B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.12
CLA.29: 27 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: F.110, I.113, M.116, L.117, F.120, I.140
- Chain G: L.42, L.45
- Ligands: CLA.24, CLA.30, CLA.31, CLA.77, UNL.83, DGD.92
17 PLIP interactions:8 interactions with chain B, 7 interactions with chain D, 2 interactions with chain G,- Hydrophobic interactions: B:A.242, B:F.245, B:F.246, B:F.462, B:F.462, B:L.473, D:F.110, D:I.113, D:M.116, D:L.117, D:L.117, D:F.120, D:I.140, G:L.42, G:L.45
- Water bridges: B:S.239
- Metal complexes: B:H.465
CLA.30: 23 residues within 4Å:- Chain B: F.138, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain D: F.110
- Chain G: T.26, T.27, M.30, F.33, L.41, L.42
- Ligands: CLA.26, CLA.29, CLA.31, UNL.83, BCR.91
16 PLIP interactions:10 interactions with chain B, 5 interactions with chain G, 1 interactions with chain D,- Hydrophobic interactions: B:F.138, B:F.138, B:F.138, B:V.207, B:A.211, B:F.214, B:L.224, B:L.228, G:M.30, G:F.33, G:L.41, G:L.42, D:F.110
- Salt bridges: B:H.215
- Metal complexes: B:H.215
- Hydrogen bonds: G:T.26
CLA.31: 22 residues within 4Å:- Chain B: H.22, L.134, M.137, F.138, H.141, L.142, A.145, L.228, M.230, I.233, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.24, CLA.26, CLA.29, CLA.30, CLA.33, CLA.36, BCR.91
10 PLIP interactions:9 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:F.138, B:L.228, B:M.230, B:I.233, B:T.235, B:V.236
- Metal complexes: H2O.6
CLA.32: 23 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471, F.478
- Ligands: LHG.20, CLA.25, CLA.33, CLA.34, CLA.35, LHG.99
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:W.4, B:L.237, B:L.237, B:I.241, B:F.457, B:F.461, B:F.463
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.33: 20 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, A.21, H.22, H.25, T.26, I.233, V.236, L.237, S.240, V.244
- Ligands: CLA.25, CLA.26, CLA.31, CLA.32, CLA.34, CLA.35, CLA.36
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:L.11, B:L.11, B:I.12, B:L.18, B:H.22, B:H.25, B:I.233, B:V.236, B:L.237, B:L.237, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- pi-Stacking: B:H.25
- Metal complexes: B:H.22
CLA.34: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: LHG.20, CLA.25, CLA.28, CLA.32, CLA.33, CLA.35, BCR.38, BCR.39, LMG.42
7 PLIP interactions:7 interactions with chain B,- Hydrophobic interactions: B:V.29, B:W.32, B:W.32, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.35: 24 residues within 4Å:- Chain 5: F.8
- Chain B: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.8, V.10
- Chain L: F.21, L.25
- Ligands: CLA.32, CLA.33, CLA.34, BCR.38, SQD.41, LMG.42, LHG.99, UNL.213, LMT.214, BCR.219
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain L,- Hydrophobic interactions: B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:F.21, L:L.25
- Metal complexes: B:H.8
CLA.36: 18 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.10, L.13
- Ligands: CLA.25, CLA.26, CLA.31, CLA.33, CLA.37, BCR.40
10 PLIP interactions:5 interactions with chain G, 5 interactions with chain B,- Hydrophobic interactions: G:L.6, G:L.10, G:L.10, G:L.13, G:L.13, B:I.19, B:L.132, B:L.144
- Hydrogen bonds: B:H.22
- Metal complexes: B:H.141
CLA.37: 16 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119, L.121
- Chain G: T.4, W.5, L.6, G.7
- Ligands: CLA.25, CLA.27, CLA.36, BCR.40, UNL.47
11 PLIP interactions:3 interactions with chain G, 8 interactions with chain B,- Hydrophobic interactions: G:L.6, B:I.19, B:L.23, B:W.112, B:W.112, B:L.119, B:L.121
- Hydrogen bonds: G:T.4
- Water bridges: G:L.6
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
CLA.53: 20 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, F.271, V.278, Y.279
- Ligands: CLA.54, CLA.55, CLA.58, CLA.59, BCR.66
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:A.154, C:I.206, C:I.222, C:I.222, C:I.222, C:A.260, C:M.264, C:F.271, C:V.278
- Metal complexes: C:H.219
CLA.54: 23 residues within 4Å:- Chain C: W.45, I.69, L.70, H.73, W.79, L.156, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.53, CLA.55, CLA.56, CLA.62, CLA.64, LMG.70
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:W.45, C:I.69, C:L.70, C:W.79, C:L.156, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.55: 18 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100
- Ligands: CLA.53, CLA.54, CLA.59, CLA.61, CLA.62, CLA.64, CLA.65, LMG.71
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:V.96
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.56: 19 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.54, CLA.60, CLA.62, DGD.68, DGD.69, LMG.70, LHG.81
11 PLIP interactions:9 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:W.45, C:F.52, C:I.69, C:W.407, C:W.407, C:W.407, C:F.418, C:F.418, C:F.418, J:V.21
- Metal complexes: H2O.18
CLA.57: 21 residues within 4Å:- Chain A: F.33, L.121, M.127, G.128, W.131
- Chain C: F.246, S.255, Y.256, G.259, A.260, H.423, L.424, A.427, R.431
- Chain H: V.16, F.23
- Ligands: CLA.8, LMG.19, CLA.59, BCR.66, DGD.67
15 PLIP interactions:2 interactions with chain H, 8 interactions with chain C, 5 interactions with chain A,- Hydrophobic interactions: H:V.16, H:F.23, C:F.246, C:Y.256, C:Y.256, C:L.424, A:L.121, A:W.131, A:W.131, A:W.131
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
- pi-Stacking: A:W.131
CLA.58: 21 residues within 4Å:- Chain C: L.143, L.147, L.195, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.8, LMG.19, LMT.21, CLA.53, CLA.59, BCR.66, DGD.67
8 PLIP interactions:8 interactions with chain C,- Hydrophobic interactions: C:L.143, C:L.147, C:L.147, C:W.232, C:W.241
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.59: 20 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.53, CLA.55, CLA.57, CLA.58, CLA.61, BCR.66
14 PLIP interactions:13 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.150, C:F.246, C:F.246, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:L.261
- Hydrogen bonds: C:H.146
- Metal complexes: H2O.14
CLA.60: 22 residues within 4Å:- Chain C: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Ligands: CLA.56, CLA.61, CLA.62, CLA.63, DGD.68, LMG.70, LHG.81
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:L.254, C:L.258, C:F.419, C:W.425
- Hydrogen bonds: C:N.21, C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.61: 22 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.55, CLA.59, CLA.60, CLA.62, CLA.63, CLA.64
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:I.25, C:A.34, C:H.38, C:W.133, C:W.133, C:W.133, C:Y.253
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.62: 17 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, L.24
- Ligands: CLA.54, CLA.55, CLA.56, CLA.60, CLA.61, CLA.63, LHG.81
9 PLIP interactions:2 interactions with chain J, 7 interactions with chain C,- Hydrophobic interactions: J:P.20, J:L.24, C:L.41, C:W.45, C:L.261, C:F.418, C:F.419
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.63: 34 residues within 4Å:- Chain C: T.6, N.7, R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, L.41, A.105, G.108, F.109
- Chain J: F.23, L.24, A.27, W.30, Q.31
- Chain R: I.19, I.20, L.23, N.29, L.30
- Ligands: CLA.60, CLA.61, CLA.62, BCR.98, LMG.224
- Chain a: V.20, V.23, P.24, A.28
21 PLIP interactions:7 interactions with chain J, 7 interactions with chain C, 3 interactions with chain R, 4 interactions with chain a,- Hydrophobic interactions: J:F.23, J:L.24, J:A.27, J:W.30, J:Q.31, C:W.17, C:L.24, C:L.24, C:L.41, C:F.109, R:I.19, R:I.20, R:L.30, a:V.20, a:V.23, a:P.24, a:A.28
- pi-Stacking: J:W.30, J:W.30
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
CLA.64: 20 residues within 4Å:- Chain C: L.32, H.35, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, I.152, G.153, L.156
- Ligands: CLA.54, CLA.55, CLA.61, CLA.65, BCR.96
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:L.32, C:H.35, C:F.128, C:F.129, C:Y.131, C:I.142, C:F.145, C:F.145, C:F.145, C:F.145, C:I.148, C:V.149, C:I.152, C:L.156
- Metal complexes: C:H.146
CLA.65: 16 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.55, CLA.64, LMG.71, BCR.96, LMG.224
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.106, C:L.107, C:L.122, C:Y.125, C:F.129, C:F.129
- Hydrogen bonds: C:Y.113
- Salt bridges: C:H.114
- pi-Stacking: C:Y.113, C:F.129
- Metal complexes: C:H.114
CLA.76: 29 residues within 4Å:- Chain A: M.183, F.206
- Chain D: W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.4, CLA.5, CLA.6, PL9.14, PHO.16
14 PLIP interactions:14 interactions with chain D,- Hydrophobic interactions: D:W.38, D:L.112, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:V.191, D:V.194, D:V.194, D:L.195, D:L.269
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.77: 26 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, G.99, T.102, F.103, L.106, H.107
- Chain G: L.38, L.42
- Chain Q: F.10, G.12, G.16, A.17, V.19
- Ligands: PL9.14, CLA.29, UNL.109
15 PLIP interactions:12 interactions with chain D, 2 interactions with chain G, 1 interactions with chain Q,- Hydrophobic interactions: D:L.26, D:P.29, D:L.33, D:L.81, D:L.82, D:W.83, D:W.83, D:L.106, G:L.38, G:L.42, Q:V.19
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
CLA.115: 28 residues within 4Å:- Chain 5: F.17
- Chain S: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, F.206, V.283, A.286, A.287, I.290
- Chain V: L.172, L.195
- Ligands: CLA.116, CLA.117, PHO.118, CLA.189, LHG.193
16 PLIP interactions:13 interactions with chain S, 2 interactions with chain V, 1 interactions with chain 5,- Hydrophobic interactions: S:F.119, S:P.150, S:F.182, S:F.186, S:Q.187, S:I.192, S:I.192, S:L.193, S:F.206, S:F.206, S:I.290, V:L.172, V:L.195, 5:F.17
- Water bridges: S:I.290
- Metal complexes: S:H.198
CLA.116: 22 residues within 4Å:- Chain 5: F.10
- Chain S: T.45, F.48, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183
- Chain V: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.115, PHO.118, SQD.123, LHG.161, CLA.189, PL9.192
9 PLIP interactions:6 interactions with chain S, 1 interactions with chain 5, 1 interactions with chain V, 1 Ligand-Water interactions,- Hydrophobic interactions: S:T.45, S:F.48, S:V.157, S:F.158, S:F.180, S:F.182, 5:F.10, V:V.191
- Metal complexes: H2O.39
CLA.117: 20 residues within 4Å:- Chain S: Q.199, V.202, A.203, F.206, G.207, L.210, W.278
- Chain V: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.115, PL9.125, PHO.127, LHG.131, DGD.180, CLA.189, LMG.198
13 PLIP interactions:7 interactions with chain V, 5 interactions with chain S, 1 Ligand-Water interactions,- Hydrophobic interactions: V:F.147, V:F.147, V:I.168, V:F.169, V:F.171, V:L.172, V:L.172, S:V.202, S:F.206, S:L.210, S:W.278
- pi-Stacking: S:F.206
- Metal complexes: H2O.41
CLA.119: 26 residues within 4Å:- Chain S: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118
- Chain Z: V.8, Y.9, V.11, V.12, T.13, F.15, V.16, F.19
- Ligands: BCR.120, LMG.128, CLA.167, CLA.168, DGD.178, UNL.206
19 PLIP interactions:13 interactions with chain S, 6 interactions with chain Z,- Hydrophobic interactions: S:I.36, S:P.39, S:T.40, S:F.93, S:P.95, S:I.96, S:W.97, S:W.97, S:L.114, S:F.117, Z:V.8, Z:V.11, Z:F.15, Z:F.15, Z:V.16, Z:F.19
- Hydrogen bonds: S:I.96
- Salt bridges: S:H.118
- Metal complexes: S:H.118
CLA.132: 9 residues within 4Å:- Chain T: W.184, G.185, P.186, F.189
- Chain Y: F.40, L.54
- Ligands: CLA.133, HTG.154, BCR.204
8 PLIP interactions:4 interactions with chain T, 3 interactions with chain Y, 1 Ligand-Water interactions,- Hydrophobic interactions: T:W.184, T:P.186, T:F.189, T:F.189, Y:F.40, Y:F.40, Y:L.54
- Metal complexes: H2O.42
CLA.133: 26 residues within 4Å:- Chain T: E.183, G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain V: V.144, I.149, L.152
- Chain Y: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.132, CLA.134, CLA.136, BCR.204
23 PLIP interactions:14 interactions with chain T, 3 interactions with chain V, 6 interactions with chain Y,- Hydrophobic interactions: T:F.189, T:F.189, T:A.199, T:H.200, T:A.203, T:A.204, T:V.207, T:F.245, T:F.246, T:F.246, T:F.246, T:F.249, T:F.249, V:V.144, V:I.149, V:L.152, Y:F.37, Y:F.40, Y:I.44, Y:I.44, Y:L.45
- Metal complexes: T:H.200
- pi-Stacking: Y:F.40
CLA.134: 22 residues within 4Å:- Chain T: R.67, L.68, A.145, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.251, T.261
- Chain Y: M.34, F.37, L.41
- Ligands: CLA.133, CLA.135, CLA.136, CLA.137, CLA.139, BCR.204
14 PLIP interactions:2 interactions with chain Y, 12 interactions with chain T,- Hydrophobic interactions: Y:F.37, Y:L.41, T:L.68, T:F.152, T:F.152, T:F.152, T:F.246, T:F.246, T:F.246, T:A.247
- Hydrogen bonds: T:R.67
- Salt bridges: T:R.67
- pi-Cation interactions: T:H.200
- Metal complexes: T:H.201
CLA.135: 22 residues within 4Å:- Chain T: W.32, F.60, F.64, R.67, L.144, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, F.461
- Ligands: CLA.134, CLA.136, CLA.137, CLA.138, CLA.143, CLA.144, CLA.146, UNL.157
14 PLIP interactions:14 interactions with chain T,- Hydrophobic interactions: T:W.32, T:F.60, T:F.64, T:L.144, T:L.148, T:V.244, T:A.247, T:V.251, T:F.457, T:F.457, T:F.461, T:F.461
- Salt bridges: T:R.67
- Metal complexes: T:H.454
CLA.136: 26 residues within 4Å:- Chain T: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, A.145, G.146, A.204, G.208
- Ligands: CLA.133, CLA.134, CLA.135, CLA.137, CLA.140, CLA.141, CLA.143, CLA.146
10 PLIP interactions:10 interactions with chain T,- Hydrophobic interactions: T:V.29, T:W.32, T:A.33, T:L.68, T:V.95, T:L.102, T:A.145
- Water bridges: T:R.67
- Salt bridges: T:R.67
- Metal complexes: T:H.99
CLA.137: 26 residues within 4Å:- Chain T: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: SQD.12, UNL.15, CLA.134, CLA.135, CLA.136, CLA.147, BCR.150, UNL.157
10 PLIP interactions:10 interactions with chain T,- Hydrophobic interactions: T:L.68, T:W.90, T:W.90, T:A.98, T:V.101, T:L.105, T:L.148, T:F.155, T:F.161
- Metal complexes: T:H.156
CLA.138: 27 residues within 4Å:- Chain 2: F.31, F.35
- Chain 3: F.14
- Chain T: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain V: M.271
- Ligands: BCR.105, CLA.135, CLA.144, BCR.148, BCR.149, PL9.192, LMG.212
15 PLIP interactions:11 interactions with chain T, 1 interactions with chain 3, 2 interactions with chain 2, 1 Ligand-Water interactions,- Hydrophobic interactions: T:W.32, T:Y.39, T:F.60, T:F.60, T:F.60, T:F.324, T:T.326, T:W.449, T:W.449, 3:F.14, 2:F.31, 2:F.35
- Hydrogen bonds: T:G.327
- pi-Stacking: T:F.60
- Metal complexes: H2O.48
CLA.139: 25 residues within 4Å:- Chain T: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain V: L.79, F.110, I.113, M.116, L.117, I.140
- Chain Y: L.42
- Ligands: CLA.134, CLA.140, CLA.141, CLA.190, UNL.196
17 PLIP interactions:7 interactions with chain V, 9 interactions with chain T, 1 interactions with chain Y,- Hydrophobic interactions: V:L.79, V:F.110, V:I.113, V:M.116, V:L.117, V:L.117, V:I.140, T:A.242, T:F.245, T:F.246, T:F.462, T:F.462, T:L.473, Y:L.42
- Hydrogen bonds: T:S.238
- Water bridges: T:S.239
- Metal complexes: T:H.465
CLA.140: 23 residues within 4Å:- Chain T: F.138, L.142, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228, M.230
- Chain Y: T.26, T.27, M.30, F.33, L.41
- Ligands: CLA.136, CLA.139, CLA.141, UNL.196, BCR.204
15 PLIP interactions:12 interactions with chain T, 3 interactions with chain Y,- Hydrophobic interactions: T:F.138, T:F.138, T:F.138, T:L.142, T:V.207, T:A.211, T:F.214, T:F.214, T:L.224, T:L.228, Y:M.30, Y:F.33, Y:L.41
- Salt bridges: T:H.215
- Metal complexes: T:H.215
CLA.141: 18 residues within 4Å:- Chain T: L.134, M.137, F.138, H.141, L.142, A.145, L.228, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.136, CLA.139, CLA.140, CLA.143, CLA.146
9 PLIP interactions:8 interactions with chain T, 1 Ligand-Water interactions,- Hydrophobic interactions: T:L.134, T:M.137, T:F.138, T:F.138, T:L.228, T:M.230, T:T.235
- Hydrogen bonds: T:H.141
- Metal complexes: H2O.44
CLA.142: 20 residues within 4Å:- Chain T: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Ligands: CLA.143, CLA.144, CLA.145, LHG.199
13 PLIP interactions:13 interactions with chain T,- Hydrophobic interactions: T:H.8, T:T.9, T:L.237, T:L.237, T:I.241, T:F.457, T:F.461, T:F.463
- Hydrogen bonds: T:H.8
- Salt bridges: T:H.8, T:R.471
- pi-Stacking: T:W.467
- Metal complexes: T:H.468
CLA.143: 19 residues within 4Å:- Chain T: H.8, L.11, I.12, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, V.244
- Ligands: CLA.135, CLA.136, CLA.141, CLA.142, CLA.144, CLA.145, CLA.146
13 PLIP interactions:13 interactions with chain T,- Hydrophobic interactions: T:L.11, T:I.12, T:L.18, T:H.22, T:H.25, T:I.233, T:V.236, T:L.237, T:V.244
- Hydrogen bonds: T:S.240
- Salt bridges: T:H.22
- pi-Stacking: T:H.25
- Metal complexes: T:H.22
CLA.144: 14 residues within 4Å:- Chain T: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.135, CLA.138, CLA.142, CLA.143, CLA.145, BCR.148, BCR.149, LHG.199, LMG.212
8 PLIP interactions:8 interactions with chain T,- Hydrophobic interactions: T:V.29, T:V.29, T:W.32, T:W.32, T:F.461, T:F.461
- Salt bridges: T:H.8
- Metal complexes: T:H.25
CLA.145: 24 residues within 4Å:- Chain 2: Q.8, V.10
- Chain 3: F.21, L.25
- Chain N: F.8
- Chain T: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Ligands: LMT.100, LMT.104, CLA.142, CLA.143, CLA.144, BCR.148, SQD.151, LHG.161, UNL.210, LMG.212
10 PLIP interactions:6 interactions with chain T, 2 interactions with chain 3, 2 interactions with chain N,- Hydrophobic interactions: T:V.7, T:L.11, T:M.24, T:L.28, T:W.114, 3:F.21, 3:L.25, N:F.8, N:F.8
- Metal complexes: T:H.8
CLA.146: 18 residues within 4Å:- Chain T: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain Y: L.6, L.10, L.13, N.14
- Ligands: CLA.135, CLA.136, CLA.141, CLA.143, CLA.147
11 PLIP interactions:6 interactions with chain T, 5 interactions with chain Y,- Hydrophobic interactions: T:I.19, T:L.132, T:I.140, T:L.144, Y:L.6, Y:L.10, Y:L.10, Y:L.13, Y:L.13
- Hydrogen bonds: T:H.22
- Metal complexes: T:H.141
CLA.147: 13 residues within 4Å:- Chain T: I.19, L.23, A.109, W.112, H.113, L.119
- Chain Y: T.4, L.6, G.7, L.10
- Ligands: CLA.137, CLA.146, BCR.150
12 PLIP interactions:8 interactions with chain T, 4 interactions with chain Y,- Hydrophobic interactions: T:I.19, T:L.23, T:W.112, T:W.112, T:L.119, Y:L.6, Y:L.10
- pi-Stacking: T:W.112, T:W.112
- Metal complexes: T:H.113
- Hydrogen bonds: Y:T.4
- Water bridges: Y:W.5
CLA.163: 21 residues within 4Å:- Chain U: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.164, CLA.165, CLA.168, CLA.169, BCR.177
11 PLIP interactions:11 interactions with chain U,- Hydrophobic interactions: U:L.157, U:I.206, U:I.222, U:I.222, U:A.260, U:M.264, U:I.267, U:F.271, U:V.278
- Hydrogen bonds: U:Y.279
- Metal complexes: U:H.219
CLA.164: 22 residues within 4Å:- Chain U: W.45, I.69, H.73, L.77, L.156, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.163, CLA.165, CLA.166, CLA.172, CLA.174, HTG.183
14 PLIP interactions:14 interactions with chain U,- Hydrophobic interactions: U:W.45, U:I.69, U:L.77, U:F.164, U:L.261, U:M.264, U:A.268, U:L.408, U:L.415, U:F.419
- Hydrogen bonds: U:Y.279
- Salt bridges: U:H.73, U:H.412
- Metal complexes: U:H.412
CLA.165: 18 residues within 4Å:- Chain U: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100
- Ligands: CLA.163, CLA.164, CLA.169, CLA.171, CLA.172, CLA.174, CLA.175, LMG.182
6 PLIP interactions:6 interactions with chain U,- Hydrophobic interactions: U:V.43, U:A.46, U:L.77, U:V.96
- Salt bridges: U:H.73
- Metal complexes: U:H.100
CLA.166: 20 residues within 4Å:- Chain 1: P.17, V.21
- Chain U: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, F.418
- Ligands: CLA.164, CLA.170, CLA.172, DGD.179, DGD.180, LMG.181, LHG.194
12 PLIP interactions:10 interactions with chain U, 1 interactions with chain 1, 1 Ligand-Water interactions,- Hydrophobic interactions: U:W.45, U:F.52, U:I.69, U:W.407, U:W.407, U:W.407, U:L.408, U:F.418, U:F.418, 1:V.21
- pi-Stacking: U:W.407
- Metal complexes: H2O.55
CLA.167: 25 residues within 4Å:- Chain S: F.33, S.124, C.125, M.127, G.128, W.131
- Chain U: F.246, S.255, Y.256, G.259, A.260, M.263, L.420, H.423, L.424, A.427, R.431
- Chain Z: V.16, F.19, F.23
- Ligands: CLA.119, LMG.128, CLA.169, BCR.177, DGD.178
17 PLIP interactions:9 interactions with chain U, 4 interactions with chain Z, 4 interactions with chain S,- Hydrophobic interactions: U:F.246, U:Y.256, U:Y.256, U:L.420, Z:V.16, Z:F.19, Z:F.19, Z:F.23, S:W.131, S:W.131, S:W.131
- Hydrogen bonds: U:Y.256
- Water bridges: U:I.247, U:I.247
- Salt bridges: U:R.431
- Metal complexes: U:H.423
- pi-Stacking: S:W.131
CLA.168: 19 residues within 4Å:- Chain U: L.143, L.147, L.195, L.196, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, F.246
- Ligands: CLA.119, CLA.163, CLA.169, BCR.177, DGD.178
11 PLIP interactions:11 interactions with chain U,- Hydrophobic interactions: U:L.143, U:L.147, U:L.147, U:L.195, U:L.196, U:I.225, U:W.232
- Hydrogen bonds: U:F.239
- Salt bridges: U:H.233
- pi-Stacking: U:W.232
- Metal complexes: U:H.233
CLA.169: 20 residues within 4Å:- Chain U: M.139, T.140, L.143, H.146, L.147, L.150, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.163, CLA.165, CLA.167, CLA.168, CLA.171, BCR.177
15 PLIP interactions:14 interactions with chain U, 1 Ligand-Water interactions,- Hydrophobic interactions: U:M.139, U:T.140, U:L.143, U:L.150, U:F.246, U:F.246, U:F.246, U:W.248, U:Y.253, U:Y.253, U:Y.256, U:Y.256, U:A.260, U:L.261
- Metal complexes: H2O.50
CLA.170: 24 residues within 4Å:- Chain U: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Ligands: SQD.121, CLA.166, CLA.171, CLA.172, CLA.173, DGD.179, DGD.180, LMG.181, LHG.194
11 PLIP interactions:11 interactions with chain U,- Hydrophobic interactions: U:L.254, U:L.254, U:L.258, U:F.419, U:W.425
- Hydrogen bonds: U:N.21, U:N.21
- Salt bridges: U:H.426, U:R.429
- pi-Stacking: U:W.425
- Metal complexes: U:H.426
CLA.171: 24 residues within 4Å:- Chain U: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, I.142, H.146, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.165, CLA.169, CLA.170, CLA.172, CLA.173, CLA.174
12 PLIP interactions:12 interactions with chain U,- Hydrophobic interactions: U:N.21, U:L.24, U:I.25, U:L.31, U:A.34, U:H.38, U:W.133, U:W.133, U:I.142, U:Y.253
- Hydrogen bonds: U:S.257
- Metal complexes: U:H.35
CLA.172: 18 residues within 4Å:- Chain 1: P.20, V.21, L.24
- Chain U: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Ligands: CLA.164, CLA.165, CLA.166, CLA.170, CLA.171, CLA.173, LHG.194
11 PLIP interactions:9 interactions with chain U, 2 interactions with chain 1,- Hydrophobic interactions: U:L.41, U:I.42, U:W.45, U:W.45, U:L.261, U:F.418, U:F.419, 1:P.20, 1:V.21
- Hydrogen bonds: U:N.21
- Metal complexes: U:H.38
CLA.173: 33 residues within 4Å:- Chain 1: F.23, L.24, A.27, W.30, Q.31
- Chain 9: I.20, L.23, N.29, L.30
- Chain U: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, H.38, L.41, A.105, G.108, F.109, I.116
- Ligands: CLA.170, CLA.171, CLA.172, BCR.209, LMG.225
- Chain c: M.19, V.20, V.23, A.28
19 PLIP interactions:5 interactions with chain U, 8 interactions with chain 1, 3 interactions with chain c, 3 interactions with chain 9,- Hydrophobic interactions: U:K.30, U:L.41, U:F.109, 1:F.23, 1:F.23, 1:L.24, 1:A.27, 1:W.30, 1:Q.31, c:V.20, c:V.23, c:A.28, 9:I.20, 9:L.23, 9:L.30
- Hydrogen bonds: U:R.23
- Salt bridges: U:R.8
- pi-Stacking: 1:W.30, 1:W.30
CLA.174: 19 residues within 4Å:- Chain U: L.32, H.35, A.39, L.107, F.128, F.129, I.142, F.145, H.146, I.148, V.149, I.152, G.153, L.156
- Ligands: CLA.164, CLA.165, CLA.171, CLA.175, BCR.176
11 PLIP interactions:11 interactions with chain U,- Hydrophobic interactions: U:L.32, U:H.35, U:F.128, U:I.142, U:F.145, U:F.145, U:I.148, U:V.149, U:I.152, U:L.156
- Metal complexes: U:H.146
CLA.175: 15 residues within 4Å:- Chain U: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, Y.125, F.129
- Ligands: CLA.165, CLA.174, BCR.176, LMG.182, LMG.225
13 PLIP interactions:13 interactions with chain U,- Hydrophobic interactions: U:L.32, U:V.36, U:V.106, U:L.107, U:Y.113, U:Y.125, U:F.129, U:F.129, U:F.129
- Hydrogen bonds: U:Y.113
- Salt bridges: U:H.114
- pi-Stacking: U:F.129
- Metal complexes: U:H.114
CLA.189: 30 residues within 4Å:- Chain S: M.183, F.206
- Chain V: W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.115, CLA.116, CLA.117, PL9.125, PHO.127, LMG.198
15 PLIP interactions:15 interactions with chain V,- Hydrophobic interactions: V:W.38, V:L.112, V:V.142, V:F.143, V:F.171, V:F.175, V:Q.176, V:T.182, V:V.191, V:V.194, V:V.194, V:L.195, V:L.269
- pi-Stacking: V:W.181
- Metal complexes: V:H.187
CLA.190: 27 residues within 4Å:- Chain 8: G.12, L.13, G.16, A.17, V.19
- Chain V: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Chain Y: L.36, L.38, L.42
- Ligands: PL9.125, CLA.139, SQD.202, UNL.222
15 PLIP interactions:11 interactions with chain V, 2 interactions with chain 8, 2 interactions with chain Y,- Hydrophobic interactions: V:L.26, V:P.29, V:L.33, V:L.82, V:W.83, V:W.83, V:L.106, 8:L.13, 8:V.19, Y:L.36, Y:L.38
- Hydrogen bonds: V:L.82
- Salt bridges: V:H.107
- pi-Stacking: V:F.103
- Metal complexes: V:H.107
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.7: 25 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, M.172, G.175, P.279, V.283
- Chain D: L.195, A.198, L.199, I.203, W.243, F.247
- Ligands: CLA.4, CLA.5, LHG.80
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:I.115, A:F.119, A:A.146, A:Y.147, A:P.150, A:F.158, A:P.279, A:V.283, D:L.195
- Hydrogen bonds: A:Y.126, A:Q.130
- pi-Stacking: A:Y.147
PHO.16: 31 residues within 4Å:- Chain A: F.206, A.209, L.210, M.214, F.255, L.258, I.259
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.6, PL9.14, CLA.76
19 PLIP interactions:17 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.31, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:A.135, D:P.139, D:F.143, D:V.165, D:P.265, D:L.269, A:F.206, A:L.210
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136
PHO.118: 25 residues within 4Å:- Chain S: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, F.158, M.172, G.175, V.205, P.279, V.283
- Chain V: L.195, A.198, L.199, I.203, W.243, F.247
- Ligands: CLA.115, CLA.116
16 PLIP interactions:15 interactions with chain S, 1 interactions with chain V- Hydrophobic interactions: S:L.41, S:A.44, S:F.48, S:I.115, S:F.119, S:A.146, S:Y.147, S:Y.147, S:P.150, S:F.158, S:V.205, S:P.279, S:V.283, V:L.195
- Hydrogen bonds: S:Q.130, S:Y.147
PHO.127: 29 residues within 4Å:- Chain S: F.206, A.209, L.210, M.214, L.258, I.259
- Chain V: L.27, A.31, A.34, L.35, W.38, I.104, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.117, PL9.125, CLA.189
20 PLIP interactions:18 interactions with chain V, 2 interactions with chain S- Hydrophobic interactions: V:A.31, V:L.35, V:W.38, V:W.38, V:W.38, V:W.38, V:I.104, V:F.115, V:A.135, V:F.136, V:P.139, V:F.143, V:V.165, V:P.265, V:L.269, S:F.206, S:L.210
- Hydrogen bonds: V:Q.119, V:N.132
- pi-Stacking: V:F.136
- 22 x BCR: BETA-CAROTENE(Non-covalent)
BCR.9: 16 residues within 4Å:- Chain A: V.35, L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, W.105, L.106
- Chain H: F.15
- Ligands: CLA.8, UNL.15, UNL.93, HTG.156
Ligand excluded by PLIPBCR.38: 13 residues within 4Å:- Chain 5: F.19
- Chain B: M.24, L.28, C.111, W.114
- Chain L: L.13
- Ligands: CLA.28, CLA.34, CLA.35, BCR.39, SQD.41, LMG.42, BCR.219
Ligand excluded by PLIPBCR.39: 13 residues within 4Å:- Chain B: L.28, G.31, W.32, I.100, V.101, S.103, G.104
- Ligands: CLA.28, CLA.34, BCR.38, LMG.42, SQD.123, BCR.219
Ligand excluded by PLIPBCR.40: 15 residues within 4Å:- Chain 5: F.18, F.23
- Chain B: L.102, L.105, L.108, A.109, C.111, W.112, V.115
- Ligands: CLA.26, CLA.27, CLA.36, CLA.37, UNL.47, SQD.123
Ligand excluded by PLIPBCR.66: 18 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.53, CLA.57, CLA.58, CLA.59
Ligand excluded by PLIPBCR.78: 16 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, F.103
- Chain F: P.28, T.29, F.32, L.33, I.36
- Chain I: V.20, V.24
- Ligands: LMG.85
Ligand excluded by PLIPBCR.91: 15 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43
- Chain Q: T.1, I.2, L.6, F.10
- Ligands: CLA.22, CLA.30, CLA.31
Ligand excluded by PLIPBCR.96: 14 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107
- Chain J: Y.6
- Ligands: CLA.64, CLA.65, LMG.71
- Chain a: V.51, G.55, N.58, F.59
Ligand excluded by PLIPBCR.98: 18 residues within 4Å:- Chain C: A.37, G.40, L.41, L.101, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.9, L.12, L.16, F.23, W.30
- Ligands: CLA.63, BCR.110
- Chain a: L.9, S.16
Ligand excluded by PLIPBCR.105: 20 residues within 4Å:- Chain A: L.28
- Chain N: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain T: W.32, S.35, M.36, Y.39
- Ligands: SQD.12, CLA.138, BCR.148, BCR.149, SQD.151, LMT.158
Ligand excluded by PLIPBCR.110: 19 residues within 4Å:- Chain C: F.44
- Chain I: A.13, T.14, G.17, M.18
- Chain J: L.12, I.19, L.22, A.25, F.28, V.29
- Chain R: I.12, G.13, G.16, P.17
- Ligands: SQD.10, BCR.98
- Chain a: S.16, F.17
Ligand excluded by PLIPBCR.120: 16 residues within 4Å:- Chain S: L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, L.106, P.111
- Chain Z: F.15
- Ligands: HTG.43, HTG.46, CLA.119, UNL.126, UNL.206
Ligand excluded by PLIPBCR.148: 13 residues within 4Å:- Chain 3: A.10, L.13
- Chain N: F.19
- Chain T: M.24, L.28, W.114
- Ligands: BCR.105, CLA.138, CLA.144, CLA.145, BCR.149, SQD.151, LMG.212
Ligand excluded by PLIPBCR.149: 14 residues within 4Å:- Chain T: L.28, G.31, W.32, S.35, V.101, S.103, G.104
- Ligands: SQD.12, BCR.105, CLA.138, CLA.144, BCR.148, SQD.151, LMG.212
Ligand excluded by PLIPBCR.150: 12 residues within 4Å:- Chain N: F.18, F.22, F.23
- Chain T: L.105, L.108, A.109, W.112, V.115
- Ligands: SQD.12, CLA.137, CLA.147, UNL.157
Ligand excluded by PLIPBCR.176: 15 residues within 4Å:- Chain 1: Y.6
- Chain U: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Ligands: CLA.174, CLA.175, LMG.182
- Chain c: V.51, G.55, N.58, F.59
Ligand excluded by PLIPBCR.177: 19 residues within 4Å:- Chain U: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, V.215, G.218, H.219, I.222, F.246
- Chain Z: V.20, F.23, L.24
- Ligands: CLA.163, CLA.167, CLA.168, CLA.169
Ligand excluded by PLIPBCR.191: 15 residues within 4Å:- Chain 0: V.20, V.24
- Chain V: Y.32, L.33, G.36, G.37, L.39, T.40, F.91
- Chain X: P.28, T.29, F.32, L.33, I.36
- Ligands: LMG.198
Ligand excluded by PLIPBCR.204: 16 residues within 4Å:- Chain 8: T.1, I.2, L.6
- Chain Y: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43, L.54
- Ligands: CLA.132, CLA.133, CLA.134, CLA.140
Ligand excluded by PLIPBCR.209: 19 residues within 4Å:- Chain 1: Y.6, F.9, F.23, W.30
- Chain U: A.37, G.40, L.41, L.101, I.102, S.104, A.105, G.108, A.115
- Ligands: CLA.173, BCR.223, LMG.225
- Chain c: L.9, V.13, S.16
Ligand excluded by PLIPBCR.219: 20 residues within 4Å:- Chain 5: F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain B: W.32, S.35, M.36, Y.39
- Chain S: L.28
- Ligands: CLA.28, CLA.35, BCR.38, BCR.39, SQD.41, LMT.52, SQD.123
Ligand excluded by PLIPBCR.223: 19 residues within 4Å:- Chain 0: A.13, T.14, G.17, M.18
- Chain 1: L.12, I.19, L.22, A.25, F.28, V.29, A.32
- Chain 9: I.12, G.13, G.16
- Chain U: F.44
- Ligands: UNL.186, BCR.209
- Chain c: S.16, F.17
Ligand excluded by PLIP- 8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.10: 22 residues within 4Å:- Chain A: L.200, A.203, G.204, N.267, S.270, F.273, F.274, A.277, W.278, V.281, G.282
- Chain C: Q.10, A.16, W.18
- Chain D: S.220, F.222, R.223
- Chain J: A.25, F.28
- Ligands: LHG.81, UNL.97, BCR.110
14 PLIP interactions:2 interactions with chain C, 2 interactions with chain D, 1 interactions with chain J, 9 interactions with chain A- Hydrophobic interactions: C:W.18, J:F.28, A:A.203, A:F.274, A:A.277, A:W.278, A:V.281
- Hydrogen bonds: C:Q.10, D:S.220, A:N.267, A:S.270, A:S.270
- Salt bridges: D:R.223
- Water bridges: A:N.267
SQD.12: 17 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, L.42, T.45
- Chain N: F.22
- Chain T: L.108, W.112, Y.116
- Ligands: CLA.5, UNL.93, BCR.105, CLA.137, BCR.149, BCR.150, HTG.156
7 PLIP interactions:2 interactions with chain T, 5 interactions with chain A- Hydrophobic interactions: T:L.108, A:L.28, A:L.42
- Hydrogen bonds: T:Y.116, A:N.26, A:R.27, A:L.28
SQD.41: 16 residues within 4Å:- Chain 2: R.14, Y.18
- Chain 3: Y.26
- Chain 5: C.12, F.19, F.23
- Chain B: R.17, L.28, S.103, W.114
- Chain K: R.7
- Ligands: CLA.35, BCR.38, UNL.213, LMT.214, BCR.219
9 PLIP interactions:4 interactions with chain 2, 1 interactions with chain 3, 1 interactions with chain K, 2 interactions with chain B, 1 interactions with chain 5- Hydrophobic interactions: 2:Y.18, B:L.28, 5:F.19
- Hydrogen bonds: 2:R.14, 2:R.14, 3:Y.26
- Salt bridges: 2:R.14, K:R.7, B:R.17
SQD.89: 13 residues within 4Å:- Chain D: R.14, R.16
- Chain E: E.7
- Chain F: F.15, T.16, V.17, V.20
- Chain Q: T.23, I.30, D.34
- Ligands: PL9.14
- Chain b: Q.29, L.33
7 PLIP interactions:3 interactions with chain D, 2 interactions with chain F, 1 interactions with chain Q, 1 interactions with chain b- Hydrogen bonds: D:W.11, D:R.14, F:V.17, b:Q.29
- Salt bridges: D:R.16
- Water bridges: F:R.18
- Hydrophobic interactions: Q:I.30
SQD.121: 20 residues within 4Å:- Chain S: L.200, A.203, F.265, N.267, S.270, F.273, A.277, W.278, V.281, G.282
- Chain U: Q.10, A.16, W.18
- Chain V: S.220, F.222, R.223
- Ligands: CLA.170, LMG.181, UNL.186, LHG.194
16 PLIP interactions:12 interactions with chain S, 2 interactions with chain U, 2 interactions with chain V- Hydrophobic interactions: S:L.200, S:A.203, S:F.265, S:A.277, S:W.278, S:W.278, S:W.278, S:V.281, U:W.18
- Hydrogen bonds: S:N.267, S:S.270, S:S.270, U:Q.10, V:S.220
- Water bridges: S:N.267
- Salt bridges: V:R.223
SQD.123: 16 residues within 4Å:- Chain 5: F.22
- Chain B: L.108, W.112, Y.116
- Chain S: W.20, N.26, R.27, L.28, L.42
- Ligands: CLA.27, BCR.39, BCR.40, CLA.116, UNL.126, UNL.206, BCR.219
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain S- Hydrophobic interactions: B:L.108, S:L.28, S:L.42
- Hydrogen bonds: B:Y.116, B:Y.116, S:R.27, S:L.28
SQD.151: 18 residues within 4Å:- Chain 2: R.7
- Chain K: R.14, Y.18
- Chain L: V.15, Y.26
- Chain N: A.15, L.16, F.19, F.23
- Chain T: R.17, L.28, S.103, W.114
- Ligands: BCR.105, CLA.145, BCR.148, BCR.149, UNL.210
13 PLIP interactions:2 interactions with chain N, 4 interactions with chain L, 3 interactions with chain K, 2 interactions with chain T, 2 interactions with chain 2- Hydrophobic interactions: N:A.15, N:F.19, L:V.15, T:L.28
- Hydrogen bonds: L:Y.26, K:R.14, K:R.14, 2:R.7
- Water bridges: L:E.30, L:E.30
- Salt bridges: K:R.14, T:R.17, 2:R.7
SQD.202: 13 residues within 4Å:- Chain 8: T.23, V.26, I.30, D.34
- Chain V: R.16
- Chain W: E.7
- Chain X: I.14, F.15, T.16, V.17, V.20
- Ligands: PL9.125, CLA.190
5 PLIP interactions:2 interactions with chain 8, 1 interactions with chain V, 2 interactions with chain X- Hydrophobic interactions: 8:V.26
- Hydrogen bonds: 8:D.34, X:F.15, X:V.17
- Salt bridges: V:R.16
- 21 x GOL: GLYCEROL(Non-functional Binders)
GOL.11: 6 residues within 4Å:- Chain A: L.102, D.103
- Chain T: W.74, S.75
- Ligands: HTG.153, HTG.156
Ligand excluded by PLIPGOL.18: 9 residues within 4Å:- Chain A: L.71, G.74, N.75, N.76
- Chain D: S.290, Q.291
- Chain L: M.1
- Chain N: E.2, Y.6
Ligand excluded by PLIPGOL.45: 8 residues within 4Å:- Chain B: W.274, D.275, S.277, R.356, R.357, M.358, P.359
- Chain D: E.327
Ligand excluded by PLIPGOL.48: 8 residues within 4Å:- Chain B: I.12, N.13, A.131, L.132, G.231, N.232, I.233
- Chain G: Y.17
Ligand excluded by PLIPGOL.50: 7 residues within 4Å:- Chain B: F.362, S.364, F.365
- Chain D: E.313, R.316, A.317
- Chain M: Y.166
Ligand excluded by PLIPGOL.73: 10 residues within 4Å:- Chain A: L.341, L.343
- Chain C: M.378, T.379, H.380, A.381, G.391, V.392, E.395
- Chain P: K.47
Ligand excluded by PLIPGOL.102: 3 residues within 4Å:- Chain M: P.18, R.40, Y.238
Ligand excluded by PLIPGOL.103: 6 residues within 4Å:- Chain B: F.365, I.380, R.421
- Chain M: Y.166, D.167, S.168
Ligand excluded by PLIPGOL.108: 5 residues within 4Å:- Chain A: L.341
- Chain O: K.104
- Chain P: G.133, K.134, Y.137
Ligand excluded by PLIPGOL.122: 5 residues within 4Å:- Chain B: W.74, S.75
- Chain S: D.103, L.106
- Ligands: HTG.43
Ligand excluded by PLIPGOL.129: 10 residues within 4Å:- Chain 3: M.1
- Chain 5: E.2
- Chain S: L.71, L.72, Y.73, G.74
- Chain V: R.294
- Ligands: LMT.51, LMT.52, GOL.130
Ligand excluded by PLIPGOL.130: 9 residues within 4Å:- Chain 3: M.1
- Chain 5: E.2, Y.6
- Chain S: G.74, N.75, N.76
- Chain V: S.290, Q.291
- Ligands: GOL.129
Ligand excluded by PLIPGOL.155: 7 residues within 4Å:- Chain T: I.12, N.13, A.131, L.132, G.231, N.232, I.233
Ligand excluded by PLIPGOL.159: 8 residues within 4Å:- Chain T: W.274, D.275, S.277, R.356, R.357, M.358, P.359
- Chain V: E.327
Ligand excluded by PLIPGOL.160: 8 residues within 4Å:- Chain 4: Y.166, I.170
- Chain T: F.362, S.364
- Chain V: E.313, R.316, A.317, P.337
Ligand excluded by PLIPGOL.187: 10 residues within 4Å:- Chain 7: K.47
- Chain S: L.341, L.343
- Chain U: M.378, T.379, H.380, A.381, G.391, V.392, E.395
Ligand excluded by PLIPGOL.188: 7 residues within 4Å:- Chain 7: Q.34, Y.35, K.103
- Chain U: K.61, E.65, H.380, V.399
Ligand excluded by PLIPGOL.211: 4 residues within 4Å:- Chain 2: T.15
- Chain 5: E.25
- Chain V: S.252
- Ligands: LHG.193
Ligand excluded by PLIPGOL.216: 7 residues within 4Å:- Chain 4: I.8, L.13, K.16, C.17, P.18, R.40
- Chain U: N.355
Ligand excluded by PLIPGOL.217: 8 residues within 4Å:- Chain 4: Y.166, D.167, S.168, I.170
- Chain T: F.365, V.367, I.380, R.421
Ligand excluded by PLIPGOL.221: 6 residues within 4Å:- Chain 6: K.104
- Chain 7: I.45, G.133, K.134, Y.137
- Chain S: L.341
Ligand excluded by PLIP- 2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.13: 10 residues within 4Å:- Chain A: D.61, D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain C: E.336, R.339
19 PLIP interactions:4 interactions with chain C, 11 interactions with chain A, 4 Ligand-Water interactions- Hydrogen bonds: C:R.339, C:R.339
- Metal complexes: C:E.336, C:E.336, A:D.170, A:D.170, A:E.189, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, H2O.1, H2O.2, H2O.2, H2O.5
- Water bridges: A:D.61
OEX.124: 10 residues within 4Å:- Chain S: D.61, D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain U: E.336, R.339
18 PLIP interactions:4 interactions with chain U, 10 interactions with chain S, 4 Ligand-Water interactions- Hydrogen bonds: U:R.339, U:R.339
- Metal complexes: U:E.336, U:E.336, S:D.170, S:D.170, S:E.189, S:H.332, S:E.333, S:E.333, S:D.342, S:D.342, S:A.344, H2O.37, H2O.38, H2O.39, H2O.41
- Water bridges: S:D.61
- 4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.14: 28 residues within 4Å:- Chain A: F.211, M.214, H.215, L.218, I.248, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274, L.275
- Chain D: F.28, P.29
- Chain F: V.17, A.21, T.24, L.25
- Chain Q: L.27
- Ligands: CLA.6, PHO.16, CLA.76, CLA.77, LHG.86, SQD.89
17 PLIP interactions:13 interactions with chain A, 1 interactions with chain D, 2 interactions with chain F, 1 interactions with chain Q- Hydrophobic interactions: A:F.211, A:L.218, A:I.248, A:A.251, A:F.255, A:F.255, A:I.259, A:F.265, A:L.271, A:L.271, A:F.274, A:L.275, D:F.28, F:V.17, F:L.25, Q:L.27
- Hydrogen bonds: A:F.265
PL9.79: 31 residues within 4Å:- Chain A: F.52, I.53, I.77
- Chain D: M.188, M.189, A.192, G.193, L.199, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.23, V.26, L.29, L.30
- Chain N: F.10
- Ligands: CLA.5, LHG.80, LHG.99
26 PLIP interactions:3 interactions with chain A, 15 interactions with chain D, 4 interactions with chain K, 4 interactions with chain N- Hydrophobic interactions: A:F.52, A:I.53, A:I.77, D:M.188, D:M.189, D:L.199, D:I.203, D:T.207, D:A.239, D:W.243, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, K:L.23, K:V.26, K:L.29, K:L.30, N:F.10, N:F.10, N:F.10, N:F.10
- Hydrogen bonds: D:H.204, D:F.251
PL9.125: 28 residues within 4Å:- Chain 8: T.23, L.27
- Chain S: F.211, M.214, H.215, L.218, I.248, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain V: V.20, F.28, Y.32
- Chain X: A.21, T.24, L.25
- Ligands: CLA.117, PHO.127, LHG.131, CLA.189, CLA.190, SQD.202
19 PLIP interactions:12 interactions with chain S, 1 interactions with chain X, 4 interactions with chain V, 2 interactions with chain 8- Hydrophobic interactions: S:F.211, S:M.214, S:L.218, S:I.248, S:H.252, S:F.255, S:F.255, S:I.259, S:L.271, S:L.271, S:F.274, X:L.25, V:V.20, V:F.28, V:F.28, V:Y.32, 8:T.23, 8:L.27
- Hydrogen bonds: S:H.215
PL9.192: 32 residues within 4Å:- Chain 2: L.23, V.26, L.29
- Chain 5: F.10
- Chain S: F.52, I.53, I.77, I.176
- Chain V: M.188, M.189, A.192, G.193, L.199, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Ligands: CLA.116, CLA.138, LHG.161, LHG.193
25 PLIP interactions:3 interactions with chain 2, 15 interactions with chain V, 3 interactions with chain 5, 4 interactions with chain S- Hydrophobic interactions: 2:L.23, 2:V.26, 2:L.29, V:M.188, V:M.189, V:L.199, V:I.203, V:T.207, V:A.239, V:W.243, V:F.251, V:L.257, V:F.260, V:F.263, V:V.264, 5:F.10, 5:F.10, 5:F.10, S:F.52, S:I.53, S:I.77, S:I.176
- Hydrogen bonds: V:H.204, V:T.207, V:F.251
- 18 x UNL: UNKNOWN LIGAND(Non-functional Binders)(Non-covalent)
UNL.15: 7 residues within 4Å:- Chain A: L.13, R.16, F.17, W.20
- Ligands: BCR.9, UNL.93, CLA.137
Ligand excluded by PLIPUNL.47: 8 residues within 4Å:- Chain B: W.90, L.148, F.161
- Ligands: CLA.25, CLA.26, CLA.27, CLA.37, BCR.40
Ligand excluded by PLIPUNL.82: 4 residues within 4Å:- Chain D: W.22, S.23
- Chain G: L.38
- Ligands: UNL.83
Ligand excluded by PLIPUNL.83: 10 residues within 4Å:- Chain B: A.227, L.228
- Chain D: D.9, K.13, W.22
- Chain Q: F.24
- Ligands: CLA.29, CLA.30, LMT.49, UNL.82
Ligand excluded by PLIPUNL.93: 8 residues within 4Å:- Chain A: I.96
- Chain H: M.1, L.4, T.7
- Ligands: BCR.9, SQD.12, UNL.15, HTG.156
Ligand excluded by PLIPUNL.94: 4 residues within 4Å:- Chain I: G.25, Y.32
- Ligands: DGD.68, LMG.70
Ligand excluded by PLIPUNL.97: 7 residues within 4Å:- Chain A: W.278
- Chain C: W.17
- Chain D: R.223
- Chain J: F.36
- Ligands: SQD.10, DGD.69, LHG.81
Ligand excluded by PLIPUNL.109: 6 residues within 4Å:- Chain D: W.83, G.89
- Chain Q: S.15, G.16, L.20
- Ligands: CLA.77
Ligand excluded by PLIPUNL.126: 7 residues within 4Å:- Chain S: R.16, F.17, W.20
- Ligands: CLA.27, BCR.120, SQD.123, UNL.206
Ligand excluded by PLIPUNL.157: 5 residues within 4Å:- Chain T: W.90, L.148
- Ligands: CLA.135, CLA.137, BCR.150
Ligand excluded by PLIPUNL.186: 6 residues within 4Å:- Chain 1: F.36
- Chain U: W.17
- Chain V: R.223
- Ligands: SQD.121, LHG.194, BCR.223
Ligand excluded by PLIPUNL.195: 4 residues within 4Å:- Chain 8: L.20
- Chain V: W.22, F.120
- Ligands: UNL.196
Ligand excluded by PLIPUNL.196: 10 residues within 4Å:- Chain T: A.227, R.229
- Chain V: D.9, K.13, W.22
- Chain Y: L.38
- Ligands: CLA.139, CLA.140, LMT.152, UNL.195
Ligand excluded by PLIPUNL.206: 10 residues within 4Å:- Chain B: D.86
- Chain S: I.96
- Chain Z: M.1, T.3, L.4
- Ligands: HTG.46, CLA.119, BCR.120, SQD.123, UNL.126
Ligand excluded by PLIPUNL.207: 4 residues within 4Å:- Chain 0: G.25, Y.32
- Ligands: DGD.179, LMG.181
Ligand excluded by PLIPUNL.210: 5 residues within 4Å:- Chain 2: R.7
- Chain L: I.23
- Ligands: LMT.100, CLA.145, SQD.151
Ligand excluded by PLIPUNL.213: 3 residues within 4Å:- Ligands: CLA.35, SQD.41, LMT.214
Ligand excluded by PLIPUNL.222: 7 residues within 4Å:- Chain 8: S.15, G.16, L.20
- Chain V: L.82, W.83, G.89
- Ligands: CLA.190
Ligand excluded by PLIP- 14 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.17: 8 residues within 4Å:- Chain A: L.72, Y.73
- Chain D: R.294
- Chain M: G.110
- Chain T: L.38, A.42
- Ligands: HTG.153, LMT.158
8 PLIP interactions:1 interactions with chain T, 1 interactions with chain M, 4 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: T:L.38, A:L.72
- Hydrogen bonds: M:G.110, A:L.72, D:R.294, D:R.294
- Water bridges: A:S.68, A:G.74
LMT.21: 8 residues within 4Å:- Chain A: W.14, E.15
- Chain C: W.241, R.244
- Chain H: S.25, G.26, R.30
- Ligands: CLA.58
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain H- Hydrophobic interactions: C:W.241, C:W.241, C:W.241
- Hydrogen bonds: C:R.244, C:R.244, H:R.30
LMT.49: 15 residues within 4Å:- Chain B: R.223, L.224, A.227, K.497, D.500
- Chain D: R.2, F.5, D.6, D.9, D.10
- Chain G: T.27, M.34
- Chain Q: R.38
- Ligands: UNL.83, HTG.84
10 PLIP interactions:1 interactions with chain Q, 6 interactions with chain B, 2 interactions with chain D, 1 interactions with chain G- Hydrogen bonds: Q:R.38, B:K.497, B:D.500, D:R.2, D:D.9
- Hydrophobic interactions: B:L.224, B:A.227, G:T.27
- Salt bridges: B:R.223, B:K.497
LMT.51: 10 residues within 4Å:- Chain B: L.38, L.41, A.42
- Chain S: I.53, L.72, Y.73
- Chain V: R.294
- Ligands: HTG.43, LMT.52, GOL.129
5 PLIP interactions:3 interactions with chain S, 2 interactions with chain V- Hydrophobic interactions: S:I.53, S:L.72
- Hydrogen bonds: S:Y.73, V:R.294, V:R.294
LMT.52: 10 residues within 4Å:- Chain 5: M.1, I.4
- Chain B: S.35, A.42, T.43
- Chain S: L.72
- Ligands: LMT.51, GOL.129, LMT.218, BCR.219
3 PLIP interactions:1 interactions with chain S, 1 interactions with chain 5, 1 interactions with chain B- Hydrophobic interactions: S:L.72, 5:I.4, B:A.42
LMT.87: 6 residues within 4Å:- Chain E: W.35
- Chain F: F.41, I.42, Q.43
- Chain I: G.19, V.22
3 PLIP interactions:1 interactions with chain I, 2 interactions with chain F- Hydrophobic interactions: I:V.22, F:F.41
- Hydrogen bonds: F:Q.43
LMT.100: 14 residues within 4Å:- Chain 2: R.7, P.9, V.10
- Chain 3: V.20, I.24, Q.28, Q.32
- Chain L: V.27, E.30, S.31, Q.32, Q.33
- Ligands: CLA.145, UNL.210
11 PLIP interactions:3 interactions with chain 2, 3 interactions with chain 3, 5 interactions with chain L- Hydrogen bonds: 2:R.7, 2:V.10, 2:V.10, 3:Q.28, L:E.30, L:Q.32, L:Q.33
- Hydrophobic interactions: 3:V.20, 3:I.24
- Water bridges: L:E.30, L:E.30
LMT.104: 9 residues within 4Å:- Chain 3: L.6
- Chain L: M.1, Q.5, A.12
- Chain N: M.1, F.8
- Chain T: Y.39
- Ligands: CLA.145, LMG.212
4 PLIP interactions:1 interactions with chain N, 1 interactions with chain T, 2 interactions with chain L- Hydrophobic interactions: N:F.8, L:A.12
- Hydrogen bonds: T:Y.39, L:Q.5
LMT.152: 9 residues within 4Å:- Chain T: R.223, K.226, K.497, D.500
- Chain V: D.6, D.9
- Chain Y: A.31, M.34
- Ligands: UNL.196
6 PLIP interactions:1 interactions with chain Y, 1 interactions with chain V, 4 interactions with chain T- Hydrophobic interactions: Y:A.31
- Hydrogen bonds: V:D.6, T:K.226, T:K.226
- Salt bridges: T:R.223, T:K.226
LMT.158: 7 residues within 4Å:- Chain A: L.72
- Chain N: M.1, I.4
- Chain T: A.42, T.43
- Ligands: LMT.17, BCR.105
2 PLIP interactions:1 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: N:I.4
- Water bridges: A:L.72
LMT.162: 9 residues within 4Å:- Chain S: N.12, W.14, E.15
- Chain U: W.241, R.244
- Chain Z: L.24, S.25, G.26, R.30
7 PLIP interactions:3 interactions with chain U, 3 interactions with chain Z, 1 interactions with chain S- Hydrophobic interactions: U:W.241
- Hydrogen bonds: U:R.244, U:R.244, Z:S.25, Z:R.30, S:N.12
- Water bridges: Z:R.30
LMT.200: 6 residues within 4Å:- Chain 0: V.22
- Chain W: W.35, S.39
- Chain X: F.41, I.42, Q.43
4 PLIP interactions:1 interactions with chain W, 1 interactions with chain 0, 2 interactions with chain X- Hydrogen bonds: W:W.35, X:Q.43
- Hydrophobic interactions: 0:V.22
- Water bridges: X:Q.43
LMT.214: 13 residues within 4Å:- Chain 3: V.27, E.30, S.31, Q.32, Q.33, K.34
- Chain K: P.9, V.10
- Chain L: Q.28, Q.32
- Ligands: CLA.35, SQD.41, UNL.213
8 PLIP interactions:3 interactions with chain L, 3 interactions with chain 3, 2 interactions with chain K- Hydrogen bonds: L:Q.28, L:Q.32, L:Q.32, 3:E.30, 3:Q.33, 3:K.34, K:V.10, K:V.10
LMT.218: 8 residues within 4Å:- Chain 3: L.8
- Chain 5: M.1, I.4, F.8
- Chain B: Y.39
- Chain L: L.6
- Ligands: LMG.42, LMT.52
2 PLIP interactions:1 interactions with chain 3, 1 interactions with chain 5- Hydrophobic interactions: 3:L.8, 5:I.4
- 12 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.19: 19 residues within 4Å:- Chain A: F.93, W.97, E.98, F.117, L.120, F.155
- Chain C: L.196, K.197, S.198, P.199, F.200, E.203, W.205
- Chain H: K.5, Y.9
- Ligands: CLA.8, CLA.57, CLA.58, DGD.67
14 PLIP interactions:7 interactions with chain A, 5 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: A:F.117, A:L.120, A:F.155, A:F.155, C:F.200, C:W.205, C:W.205
- Hydrogen bonds: A:W.97, A:E.98, A:E.98, C:S.198, H:Y.9, H:Y.9
- Water bridges: C:G.201
LMG.42: 20 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, A.453
- Chain D: I.274
- Chain K: F.35
- Chain L: N.4, L.6, A.10, L.13, F.14
- Ligands: CLA.28, CLA.34, CLA.35, BCR.38, BCR.39, LHG.99, LMT.218
9 PLIP interactions:1 interactions with chain K, 3 interactions with chain L, 4 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: K:F.35, L:A.10, L:F.14, B:A.453, D:I.274
- Hydrogen bonds: L:N.4, B:Y.39, B:T.326, B:T.326
LMG.70: 15 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.21
- Chain J: D.14, V.18, V.21, L.22
- Chain R: Q.5, I.9
- Ligands: CLA.54, CLA.56, CLA.60, DGD.68, UNL.94
9 PLIP interactions:4 interactions with chain C, 2 interactions with chain J, 1 interactions with chain I, 2 interactions with chain R- Hydrogen bonds: C:H.56, R:Q.5
- Water bridges: C:H.56
- Salt bridges: C:H.56, C:H.56
- Hydrophobic interactions: J:V.21, J:L.22, I:I.21, R:I.9
LMG.71: 14 residues within 4Å:- Chain C: W.79, D.89, F.91, V.95, V.96, V.99, H.100, S.103
- Ligands: CLA.55, CLA.65, HTG.72, BCR.96
- Chain a: F.59, V.62
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.79, C:V.95, C:V.99
LMG.85: 19 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: T.29, I.36, M.39, Q.40
- Chain I: F.27, G.30, A.31, L.35, G.36
- Ligands: CLA.6, DGD.69, BCR.78, MG.95
14 PLIP interactions:6 interactions with chain D, 4 interactions with chain F, 4 interactions with chain I- Hydrophobic interactions: D:L.39, D:F.63, D:F.63, D:F.63, F:T.29, I:F.27
- Hydrogen bonds: D:F.63, F:M.39, F:Q.40, I:G.30
- Water bridges: D:N.62, F:I.42, I:F.27, I:G.36
LMG.128: 20 residues within 4Å:- Chain S: F.93, W.97, E.98, F.117, L.120, L.121, F.155
- Chain U: L.195, L.196, K.197, S.198, F.200, E.203, W.205, F.266
- Chain Z: K.5, Y.9
- Ligands: CLA.119, CLA.167, DGD.178
14 PLIP interactions:5 interactions with chain U, 7 interactions with chain S, 2 interactions with chain Z- Hydrophobic interactions: U:W.205, U:F.266, S:F.117, S:F.117, S:L.120, S:F.155
- Hydrogen bonds: U:E.203, S:W.97, S:E.98, S:E.98, Z:Y.9, Z:Y.9
- Water bridges: U:S.198, U:S.198
LMG.181: 13 residues within 4Å:- Chain 0: I.21
- Chain 1: D.14, V.18, V.21
- Chain 9: Q.5
- Chain U: F.52, H.56, Q.66
- Ligands: SQD.121, CLA.166, CLA.170, DGD.179, UNL.207
3 PLIP interactions:1 interactions with chain U, 1 interactions with chain 1, 1 interactions with chain 0- Salt bridges: U:H.56
- Hydrophobic interactions: 1:V.21, 0:I.21
LMG.182: 14 residues within 4Å:- Chain U: W.79, D.89, F.91, V.95, V.96, V.99, H.100, S.103
- Ligands: CLA.165, CLA.175, BCR.176, HTG.183
- Chain c: F.59, V.62
4 PLIP interactions:4 interactions with chain U- Hydrophobic interactions: U:W.79, U:V.96, U:V.99
- Hydrogen bonds: U:D.89
LMG.198: 19 residues within 4Å:- Chain 0: F.27, G.30, A.31, L.35
- Chain V: Y.57, G.60, C.61, N.62, F.63
- Chain X: T.29, I.36, M.39, Q.40
- Ligands: CLA.117, DGD.179, DGD.180, CLA.189, BCR.191, MG.208
10 PLIP interactions:2 interactions with chain X, 5 interactions with chain V, 3 interactions with chain 0- Hydrogen bonds: X:M.39, X:Q.40, V:G.60, V:F.63, 0:G.30
- Hydrophobic interactions: V:F.63, V:F.63
- Water bridges: V:N.62, 0:F.27, 0:G.36
LMG.212: 21 residues within 4Å:- Chain 2: F.35
- Chain 3: N.4, L.6, A.10, F.14, V.17
- Chain T: Y.39, T.326, G.327, P.328, K.331, F.452
- Chain V: I.274
- Ligands: LMT.104, CLA.138, CLA.144, CLA.145, BCR.148, BCR.149, LHG.161, LHG.199
8 PLIP interactions:3 interactions with chain 3, 3 interactions with chain T, 1 interactions with chain 2, 1 interactions with chain V- Hydrophobic interactions: 3:V.17, T:F.452, 2:F.35, V:I.274
- Hydrogen bonds: 3:N.4, T:T.326, T:T.326
- Water bridges: 3:N.4
LMG.224: 13 residues within 4Å:- Chain C: F.109, Y.113, R.117
- Ligands: CLA.63, CLA.65
- Chain a: M.19, Y.27, W.33, K.37, I.40, F.41, W.47, I.48
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain a- Hydrophobic interactions: C:F.109, C:F.109, a:I.40, a:F.41, a:I.48
- Hydrogen bonds: C:Y.113, C:R.117, C:R.117
- Salt bridges: a:K.37, a:K.37
LMG.225: 14 residues within 4Å:- Chain U: F.109, Y.113, R.117
- Ligands: CLA.173, CLA.175, BCR.209
- Chain c: M.19, Y.27, W.33, K.37, I.40, F.41, S.44, W.47
10 PLIP interactions:6 interactions with chain c, 4 interactions with chain U- Hydrophobic interactions: c:M.19, c:I.40, c:F.41, c:W.47, c:W.47, U:F.109, U:F.109
- Salt bridges: c:K.37
- Hydrogen bonds: U:R.117, U:R.117
- 10 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.20: 21 residues within 4Å:- Chain A: S.232, N.234
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467, F.478
- Chain D: R.129, Y.131, I.134, W.256, F.259, T.267, M.271
- Chain K: L.23
- Ligands: CLA.28, CLA.32, CLA.34, LHG.99
12 PLIP interactions:6 interactions with chain B, 2 interactions with chain A, 3 interactions with chain D, 1 interactions with chain K- Hydrophobic interactions: B:W.4, B:Y.5, B:L.460, K:L.23
- Water bridges: B:R.6, B:R.6, D:Y.131
- Salt bridges: B:R.6
- Hydrogen bonds: A:S.232, A:N.234, D:R.129, D:Y.131
LHG.80: 24 residues within 4Å:- Chain A: R.129
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.13, T.15, S.16, Y.18, L.19, L.29
- Chain N: F.10, F.17, A.20
- Ligands: CLA.4, CLA.5, PHO.7, PL9.79, LHG.99
15 PLIP interactions:6 interactions with chain K, 3 interactions with chain N, 6 interactions with chain D- Hydrophobic interactions: K:Y.18, K:L.19, K:L.29, N:F.10, N:F.17, N:A.20, D:F.247, D:F.251, D:F.260
- Hydrogen bonds: K:N.13, K:T.15, K:S.16, D:S.252, D:S.252, D:N.253
LHG.81: 20 residues within 4Å:- Chain A: R.140, W.142, L.200, F.273, A.276
- Chain C: W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.10, CLA.56, CLA.60, CLA.62, DGD.69, UNL.97
13 PLIP interactions:4 interactions with chain D, 4 interactions with chain C, 5 interactions with chain A- Hydrogen bonds: D:N.210, D:A.219, D:T.221, C:R.429, C:R.429
- Water bridges: D:T.221, A:R.140
- Hydrophobic interactions: C:W.18, C:W.18, A:L.200, A:F.273, A:A.276
- Salt bridges: A:R.140
LHG.86: 15 residues within 4Å:- Chain A: L.258, F.260, Y.262
- Chain D: F.17, F.28
- Chain E: T.4, T.5, E.7, R.8, P.9, F.10, S.11
- Chain F: R.18
- Ligands: CLA.6, PL9.14
9 PLIP interactions:7 interactions with chain E, 1 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: E:F.10, D:F.28
- Hydrogen bonds: E:T.4, E:T.4, E:T.5, E:E.7, E:F.10, E:S.11, F:R.18
LHG.99: 24 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.3, W.4, Y.5
- Chain D: W.256, F.260, F.263
- Chain K: E.11, L.12, N.13, S.16, L.19, G.20, L.23
- Chain L: P.18, F.21
- Ligands: CLA.5, LHG.20, CLA.32, CLA.35, LMG.42, PL9.79, LHG.80
13 PLIP interactions:3 interactions with chain A, 3 interactions with chain K, 4 interactions with chain D, 2 interactions with chain B, 1 interactions with chain L- Hydrogen bonds: A:S.232, A:S.232, A:N.234, K:E.11, K:N.13, K:S.16, B:W.4, B:Y.5
- Hydrophobic interactions: D:W.256, D:F.260, D:F.263, D:F.263, L:P.18
LHG.131: 14 residues within 4Å:- Chain S: L.258, I.259, F.260, Y.262, A.263
- Chain V: F.17
- Chain W: E.7, P.9, F.10, S.11
- Chain X: R.18, A.21
- Ligands: CLA.117, PL9.125
11 PLIP interactions:5 interactions with chain S, 2 interactions with chain X, 4 interactions with chain W- Hydrophobic interactions: S:I.259, S:F.260, S:F.260, S:F.260, S:A.263, X:A.21
- Hydrogen bonds: X:R.18, W:E.7, W:F.10, W:S.11, W:S.11
LHG.161: 23 residues within 4Å:- Chain 2: E.11, L.12, N.13, S.16, L.19, G.20, L.23, V.26
- Chain 3: V.17, F.21
- Chain S: S.232, N.234
- Chain T: P.3, W.4, Y.5
- Chain V: W.256, F.263
- Ligands: CLA.116, CLA.145, PL9.192, LHG.193, LHG.199, LMG.212
13 PLIP interactions:3 interactions with chain V, 4 interactions with chain 2, 1 interactions with chain 3, 3 interactions with chain S, 2 interactions with chain T- Hydrophobic interactions: V:W.256, V:F.263, V:F.263, 2:V.26, 3:V.17
- Hydrogen bonds: 2:E.11, 2:N.13, 2:S.16, S:S.232, S:S.232, S:N.234, T:W.4, T:Y.5
LHG.193: 23 residues within 4Å:- Chain 2: N.13, T.15, S.16, Y.18, L.19, L.29
- Chain 5: F.17, A.20, I.21
- Chain S: M.37
- Chain V: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Ligands: CLA.115, LHG.161, PL9.192, GOL.211
13 PLIP interactions:6 interactions with chain V, 3 interactions with chain 2, 4 interactions with chain 5- Hydrophobic interactions: V:F.247, V:F.251, V:F.260, 2:L.29, 5:F.17, 5:F.17, 5:F.17, 5:I.21
- Hydrogen bonds: V:S.252, V:S.252, V:N.253, 2:N.13, 2:S.16
LHG.194: 20 residues within 4Å:- Chain S: R.140, W.142, A.146, F.273, V.280
- Chain U: W.18, W.425, R.429
- Chain V: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.121, CLA.166, CLA.170, CLA.172, DGD.180, UNL.186
13 PLIP interactions:5 interactions with chain U, 5 interactions with chain S, 3 interactions with chain V- Hydrophobic interactions: U:W.18, U:W.18, U:W.425, S:W.142, S:A.146, S:F.273, S:V.280
- Hydrogen bonds: U:R.429, U:R.429, V:N.210, V:A.219, V:T.221
- Salt bridges: S:R.140
LHG.199: 20 residues within 4Å:- Chain 2: L.23
- Chain 3: P.18
- Chain S: N.234
- Chain T: W.4, Y.5, R.6, L.460, F.463, W.467
- Chain V: R.129, Y.131, I.134, W.256, F.259, T.267, M.271
- Ligands: CLA.142, CLA.144, LHG.161, LMG.212
12 PLIP interactions:6 interactions with chain T, 3 interactions with chain V, 1 interactions with chain 2, 1 interactions with chain 3, 1 interactions with chain S- Hydrophobic interactions: T:W.4, T:Y.5, T:L.460, 2:L.23, 3:P.18
- Water bridges: T:R.6, T:R.6, V:Y.131
- Salt bridges: T:R.6
- Hydrogen bonds: V:R.129, V:Y.131, S:N.234
- 11 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.43: 11 residues within 4Å:- Chain 4: G.110, G.111
- Chain B: S.73, S.75, W.77, E.93, L.97
- Chain S: Y.73
- Ligands: LMT.51, BCR.120, GOL.122
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.97
- Hydrogen bonds: B:S.73, B:S.75, B:E.93
- Water bridges: B:L.41
HTG.44: 12 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, E.430, F.431, T.433
- Chain M: Q.174, A.175, K.176, E.177, E.178
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain M- Hydrophobic interactions: B:Y.419
- Hydrogen bonds: B:K.340, B:K.340, B:K.422, B:E.430, B:F.431, B:F.431, M:Q.174, M:K.176
- Water bridges: M:E.177, M:E.177
HTG.46: 8 residues within 4Å:- Chain B: W.74, D.86, G.88, F.89
- Chain S: I.50, L.102
- Ligands: BCR.120, UNL.206
7 PLIP interactions:3 interactions with chain S, 3 interactions with chain B, 1 interactions with chain 4- Hydrophobic interactions: S:I.50, B:W.74
- Water bridges: S:L.102, S:D.103, B:W.74, 4:K.67
- Hydrogen bonds: B:D.86
HTG.72: 4 residues within 4Å:- Chain C: W.79, F.164, G.165
- Ligands: LMG.71
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.79
HTG.84: 8 residues within 4Å:- Chain D: G.3, W.4, F.5, D.6
- Chain G: W.24, T.27, P.28
- Ligands: LMT.49
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain G- Hydrogen bonds: D:G.3, D:G.3, D:F.5, D:D.6
- Hydrophobic interactions: G:W.24, G:T.27
HTG.107: 6 residues within 4Å:- Chain P: A.89, E.90, R.96, S.97, D.99, I.100
4 PLIP interactions:4 interactions with chain P- Hydrogen bonds: P:E.90, P:E.90, P:R.96, P:D.99
HTG.153: 10 residues within 4Å:- Chain A: Y.73
- Chain M: G.110, G.111
- Chain T: S.73, S.75, W.77, E.93, L.97
- Ligands: GOL.11, LMT.17
4 PLIP interactions:4 interactions with chain T- Hydrophobic interactions: T:L.97
- Hydrogen bonds: T:S.73, T:E.93
- Water bridges: T:L.41
HTG.154: 3 residues within 4Å:- Chain T: W.184, I.206
- Ligands: CLA.132
2 PLIP interactions:2 interactions with chain T- Hydrophobic interactions: T:W.184, T:I.206
HTG.156: 11 residues within 4Å:- Chain A: I.50, L.102
- Chain T: W.74, D.86, G.88, F.89, L.97
- Ligands: BCR.9, GOL.11, SQD.12, UNL.93
8 PLIP interactions:2 interactions with chain A, 5 interactions with chain T, 1 interactions with chain M- Hydrophobic interactions: A:I.50, T:W.74, T:L.97
- Water bridges: A:L.102, M:K.67
- Hydrogen bonds: T:D.86, T:G.88, T:G.88
HTG.183: 6 residues within 4Å:- Chain U: W.79, F.163, F.164, G.165
- Ligands: CLA.164, LMG.182
2 PLIP interactions:2 interactions with chain U- Hydrogen bonds: U:W.79, U:F.163
HTG.197: 5 residues within 4Å:- Chain V: G.3, W.4, F.5
- Chain Y: W.24, P.28
3 PLIP interactions:3 interactions with chain V- Hydrophobic interactions: V:W.4
- Hydrogen bonds: V:F.5
- Water bridges: V:G.3
- 8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.67: 31 residues within 4Å:- Chain A: L.91, S.148, A.152, F.155, I.160, I.163
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, F.417
- Ligands: CLA.8, LMG.19, CLA.57, CLA.58
18 PLIP interactions:4 interactions with chain A, 14 interactions with chain C- Hydrophobic interactions: A:A.152, A:F.155, A:I.160, A:I.163, C:F.200, C:F.200, C:W.205, C:V.207, C:F.417
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:T.277, C:D.342, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200
DGD.68: 20 residues within 4Å:- Chain A: H.195, F.197, L.297
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410
- Chain I: F.28, Y.32
- Ligands: CLA.56, CLA.60, DGD.69, LMG.70, UNL.94
15 PLIP interactions:2 interactions with chain A, 10 interactions with chain C, 3 interactions with chain I- Hydrophobic interactions: A:F.197, A:L.297, C:L.386, C:W.407, I:F.28, I:F.28
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402
- Water bridges: C:E.65, C:G.67, C:G.67, I:Y.32
DGD.69: 29 residues within 4Å:- Chain A: P.196, Q.199, L.200, A.203, W.278, F.300, N.301, F.302, S.305
- Chain C: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain I: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain P: Q.34
- Ligands: CLA.6, CLA.56, DGD.68, LHG.81, LMG.85, UNL.97
14 PLIP interactions:2 interactions with chain P, 2 interactions with chain I, 5 interactions with chain C, 5 interactions with chain A- Hydrogen bonds: P:Q.34, P:Q.34, I:G.36, I:S.38, C:N.387, C:N.397, C:S.398, C:V.399, A:S.305
- Water bridges: C:N.400
- Hydrophobic interactions: A:P.196, A:L.200, A:A.203, A:W.278
DGD.92: 23 residues within 4Å:- Chain B: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, F.462
- Chain D: G.76, H.77, F.110, I.113, I.149, L.152, G.153, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.29
18 PLIP interactions:4 interactions with chain B, 7 interactions with chain G, 7 interactions with chain D- Hydrophobic interactions: B:F.462, B:F.462, G:Y.48, G:Y.48, G:Y.48, D:F.110, D:I.113, D:I.149, D:L.152, D:L.281
- Hydrogen bonds: B:Y.192, B:Y.192, G:N.49, G:V.59, G:S.60, G:W.61, D:H.77
- Water bridges: D:G.76
DGD.178: 33 residues within 4Å:- Chain S: L.91, S.148, L.151, A.152, F.155, I.160, I.163
- Chain U: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, M.263, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.119, LMG.128, CLA.167, CLA.168
20 PLIP interactions:5 interactions with chain S, 15 interactions with chain U- Hydrophobic interactions: S:L.151, S:A.152, S:F.155, S:I.160, S:I.163, U:P.199, U:F.200, U:W.205, U:V.207, U:F.266
- Hydrogen bonds: U:G.202, U:N.276, U:T.277, U:T.277, U:T.277, U:D.342, U:D.342, U:R.344, U:R.344
- Water bridges: U:F.200
DGD.179: 19 residues within 4Å:- Chain 0: Y.32
- Chain S: H.195, F.197
- Chain U: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, S.411
- Ligands: CLA.166, CLA.170, DGD.180, LMG.181, LMG.198, UNL.207
13 PLIP interactions:10 interactions with chain U, 1 interactions with chain 0, 2 interactions with chain S- Hydrophobic interactions: U:L.386, S:F.197, S:F.197
- Hydrogen bonds: U:S.388, U:N.400, U:N.400, U:V.402, U:V.402
- Water bridges: U:Y.64, U:E.65, U:Q.66, U:G.67, 0:Y.32
DGD.180: 29 residues within 4Å:- Chain 0: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain 7: Q.34
- Chain S: Q.199, L.200, A.203, W.278, F.300, N.301, F.302, S.305
- Chain U: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain V: N.62
- Ligands: CLA.117, CLA.166, CLA.170, DGD.179, LHG.194, LMG.198
14 PLIP interactions:4 interactions with chain U, 2 interactions with chain 7, 3 interactions with chain 0, 5 interactions with chain S- Hydrogen bonds: U:N.387, U:N.397, U:S.398, U:V.399, 7:Q.34, 7:Q.34, 0:G.36, 0:S.38, S:S.305
- Water bridges: 0:G.36
- Hydrophobic interactions: S:L.200, S:A.203, S:W.278, S:F.300
DGD.205: 23 residues within 4Å:- Chain T: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain V: G.76, H.77, I.113, I.149, L.152, G.153, L.281
- Chain Y: L.45, Y.48, N.49, V.59, S.60, W.61
20 PLIP interactions:8 interactions with chain V, 6 interactions with chain Y, 6 interactions with chain T- Hydrophobic interactions: V:I.113, V:I.149, V:L.152, V:L.152, V:L.281, Y:Y.48, Y:Y.48, T:T.451, T:A.455, T:F.462
- Hydrogen bonds: V:H.77, V:S.155, Y:N.49, Y:V.59, Y:S.60, Y:W.61, T:Y.192
- Water bridges: V:H.77, T:Y.192, T:Y.192
- 7 x CA: CALCIUM ION(Non-covalent)
CA.74: 6 residues within 4Å:- Chain C: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:N.137, C:T.140, C:T.141, C:H.233, C:T.236
CA.90: 3 residues within 4Å:- Chain F: R.44
- Chain P: E.2, E.23
No protein-ligand interaction detected (PLIP)CA.101: 6 residues within 4Å:- Chain M: T.136, S.137, T.138, D.139, N.198, V.199
3 PLIP interactions:2 interactions with chain M, 1 Ligand-Water interactions- Metal complexes: M:T.136, M:V.199, H2O.28
CA.184: 6 residues within 4Å:- Chain U: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain U- Metal complexes: U:N.137, U:T.140, U:T.141, U:H.233, U:T.236
CA.185: 5 residues within 4Å:- Chain U: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:5 interactions with chain U- Metal complexes: U:F.4, U:T.6, U:D.9, U:E.11, U:S.12
CA.203: 2 residues within 4Å:- Chain 7: E.23
- Chain X: R.44
No protein-ligand interaction detected (PLIP)CA.215: 3 residues within 4Å:- Chain 4: T.136, N.198, V.199
3 PLIP interactions:2 interactions with chain 4, 1 Ligand-Water interactions- Metal complexes: 4:T.136, 4:V.199, H2O.62
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.75: 9 residues within 4Å:- Chain A: H.215, E.244, Y.246, H.272
- Chain D: H.204, Y.234, K.254, H.258
- Ligands: FE2.1
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:H.215, D:Y.234, D:K.254
BCT.114: 10 residues within 4Å:- Chain S: H.215, V.219, E.244, Y.246, H.272
- Chain V: H.204, Y.234, K.254, H.258
- Ligands: FE2.111
1 PLIP interactions:1 interactions with chain S- Hydrogen bonds: S:Y.246
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.88: 18 residues within 4Å:- Chain E: F.10, I.13, R.18, Y.19, H.23, T.26, I.27, L.30
- Chain F: I.14, R.18, W.19, V.22, H.23, A.26, V.27, I.30
- Chain b: A.18, I.22
23 PLIP interactions:11 interactions with chain F, 10 interactions with chain E, 2 interactions with chain b,- Hydrophobic interactions: F:I.14, F:W.19, F:V.22, F:A.26, F:V.27, F:I.30, E:I.13, E:T.26, E:I.27, E:I.27, b:A.18, b:I.22
- Water bridges: F:T.16, E:R.8, E:R.8
- Salt bridges: F:R.18, E:R.8, E:R.18
- pi-Stacking: F:W.19, F:W.19, E:Y.19
- Metal complexes: F:H.23, E:H.23
HEM.201: 17 residues within 4Å:- Chain W: F.10, I.13, R.18, Y.19, I.22, H.23, T.26, I.27, L.30
- Chain X: F.15, R.18, W.19, V.22, H.23, A.26, V.27, I.30
18 PLIP interactions:9 interactions with chain W, 9 interactions with chain X,- Hydrophobic interactions: W:F.10, W:I.13, W:I.22, W:T.26, W:I.27, X:F.15, X:V.22, X:A.26, X:V.27, X:I.30
- Salt bridges: W:R.18, W:H.23, X:R.18
- pi-Stacking: W:Y.19, X:W.19, X:W.19
- Metal complexes: W:H.23, X:H.23
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.95: 5 residues within 4Å:- Chain I: G.30, A.33, G.34, L.35
- Ligands: LMG.85
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.30, I:A.33, I:L.35, H2O.25
MG.208: 5 residues within 4Å:- Chain 0: G.30, A.33, G.34, L.35
- Ligands: LMG.198
4 PLIP interactions:3 interactions with chain 0, 1 Ligand-Water interactions- Metal complexes: 0:G.30, 0:A.33, 0:L.35, H2O.60
- 2 x HEC: HEME C(Covalent)
HEC.106: 24 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
17 PLIP interactions:17 interactions with chain P,- Hydrophobic interactions: P:T.46, P:N.49, P:L.52, P:L.54, P:L.72, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- Water bridges: P:N.49
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
HEC.220: 23 residues within 4Å:- Chain 7: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
18 PLIP interactions:18 interactions with chain 7,- Hydrophobic interactions: 7:A.36, 7:T.46, 7:N.49, 7:L.52, 7:L.54, 7:L.72, 7:Y.75, 7:Y.75, 7:I.88, 7:P.93, 7:I.115, 7:I.119
- Hydrogen bonds: 7:D.53
- Water bridges: 7:N.49, 7:Y.82
- pi-Stacking: 7:Y.75
- Metal complexes: 7:H.41, 7:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, H. et al., Oxygen-evolving photosystem II structures during S 1 -S 2 -S 3 transitions. Nature (2024)
- Release Date
- 2024-01-17
- Peptides
- Photosystem II protein D1: AS
Photosystem II CP47 reaction center protein: BT
Photosystem II CP43 reaction center protein: CU
Photosystem II D2 protein: DV
Cytochrome b559 subunit alpha: EW
Cytochrome b559 subunit beta: FX
Photosystem II reaction center protein H: GY
Photosystem II reaction center protein I: HZ
Photosystem II reaction center protein J: I0
Photosystem II reaction center protein K: J1
Photosystem II reaction center protein L: K2
Photosystem II reaction center protein M: L3
Photosystem II manganese-stabilizing polypeptide: M4
Photosystem II reaction center protein T: N5
Photosystem II 12 kDa extrinsic protein: O6
Cytochrome c-550: P7
Photosystem II reaction center protein X: Q8
Photosystem II reaction center protein Ycf12: R9
Photosystem II reaction center protein Z: ac
Photosystem II protein Y: b - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AS
aB
BT
bC
CU
cD
DV
dE
EW
eF
FX
fG
HY
hH
IZ
iI
J0
jJ
K1
kK
L2
lL
M3
mM
O4
oN
T5
tO
U6
uP
V7
vQ
X8
xR
Y9
ya
Zc
zb
R - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8ir5.1
XFEL structure of cyanobacterial photosystem II under dark conditions
Photosystem II protein D1
Toggle Identical (AS)Photosystem II CP47 reaction center protein
Toggle Identical (BT)Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Toggle Identical (GY)Photosystem II reaction center protein I
Toggle Identical (HZ)Photosystem II reaction center protein J
Photosystem II reaction center protein K
Toggle Identical (J1)Photosystem II reaction center protein L
Toggle Identical (K2)Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Toggle Identical (M4)Photosystem II reaction center protein T
Toggle Identical (N5)Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Toggle Identical (P7)Photosystem II reaction center protein X
Toggle Identical (Q8)Photosystem II reaction center protein Ycf12
Toggle Identical (R9)Photosystem II reaction center protein Z
Toggle Identical (ac)Photosystem II protein Y
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