- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 10 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.1: 9 residues within 4Å:- Chain A: I.43, S.58, L.62, Y.63, G.64
- Chain D: R.294
- Ligands: UNL.13, HTG.146, UNL.159
6 PLIP interactions:3 interactions with chain A, 1 interactions with chain M, 2 interactions with chain D- Hydrophobic interactions: A:I.43, A:L.62
- Hydrogen bonds: A:S.58, D:R.294, D:R.294
- Water bridges: M:G.109
LMT.47: 12 residues within 4Å:- Chain B: R.223, K.226, A.227, D.500
- Chain D: F.5, D.6, D.9
- Chain G: W.24, A.31, M.34
- Ligands: UNL.49, HTG.116
7 PLIP interactions:2 interactions with chain D, 3 interactions with chain B, 2 interactions with chain G- Hydrophobic interactions: D:F.5, D:F.5, B:A.227, G:W.24, G:A.31
- Hydrogen bonds: B:R.223
- Salt bridges: B:R.223
LMT.84: 11 residues within 4Å:- Chain A: N.2, W.4, E.5
- Chain C: W.241, R.244
- Chain H: L.24, S.25, G.26, R.30
- Ligands: UNL.14, CLA.69
5 PLIP interactions:2 interactions with chain H, 1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: H:S.25, H:R.30, A:E.5, C:R.244, C:R.244
LMT.137: 7 residues within 4Å:- Chain I: V.25, G.26, Y.30, Y.33
- Ligands: DGD.80, DGD.81, LMG.82
No protein-ligand interaction detected (PLIP)LMT.142: 6 residues within 4Å:- Chain K: R.13, Y.17, L.20
- Chain L: E.30
- Chain N: C.12
- Ligands: LMT.143
4 PLIP interactions:4 interactions with chain K- Hydrophobic interactions: K:Y.17, K:L.20
- Hydrogen bonds: K:R.13
- Salt bridges: K:R.13
LMT.143: 7 residues within 4Å:- Chain L: V.27, E.30, S.31, Q.32, Q.33, K.34
- Ligands: LMT.142
4 PLIP interactions:4 interactions with chain L- Hydrophobic interactions: L:V.27
- Hydrogen bonds: L:E.30, L:Q.32, L:K.34
LMT.144: 8 residues within 4Å:- Chain A: L.62
- Chain L: M.1
- Chain N: M.1, I.4, F.8
- Ligands: BCR.157, LMT.158, UNL.159
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.62
LMT.145: 2 residues within 4Å:- Chain B: Y.39
- Chain L: Q.5
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain L- Water bridges: B:K.331
- Hydrogen bonds: L:Q.5
LMT.158: 4 residues within 4Å:- Chain L: A.12
- Chain N: I.4, F.8
- Ligands: LMT.144
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:I.4, N:F.8
LMT.175: 14 residues within 4Å:- Chain C: A.105, F.109, Y.113, R.117
- Chain S: M.19, Y.27, W.33, K.37, I.40, F.41, S.44, W.47
- Ligands: CLA.74, CLA.76
9 PLIP interactions:4 interactions with chain C, 5 interactions with chain S- Hydrophobic interactions: C:A.105, C:F.109, C:F.109, S:M.19, S:W.47, S:W.47
- Hydrogen bonds: C:Y.113, S:W.33
- Salt bridges: S:K.37
- 1 x OEX: CA-MN4-O5 CLUSTER(Non-covalent)
OEX.2: 11 residues within 4Å:- Chain A: D.51, D.160, V.175, E.179, H.322, E.323, H.327, D.332, A.334
- Chain C: E.336, R.339
18 PLIP interactions:10 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Water bridges: A:D.51
- Metal complexes: A:D.160, A:D.160, A:E.179, A:H.322, A:E.323, A:E.323, A:D.332, A:D.332, A:A.334, C:E.336, C:E.336, H2O.2, H2O.3, H2O.4, H2O.4
- Hydrogen bonds: C:R.339, C:R.339
- 1 x FE2: FE (II) ION(Non-covalent)
FE2.3: 5 residues within 4Å:- Chain A: H.205, H.262
- Chain D: H.204, H.258
- Ligands: BCT.104
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.205, A:H.262, D:H.204, D:H.258
- 3 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 4 residues within 4Å:- Chain A: N.171, H.322, E.323
- Chain D: K.307
Ligand excluded by PLIPCL.5: 5 residues within 4Å:- Chain A: H.327, N.328, F.329
- Chain C: G.335, E.336
Ligand excluded by PLIPCL.164: 1 residues within 4Å:- Ligands: DMS.170
Ligand excluded by PLIP- 35 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.6: 27 residues within 4Å:- Chain A: F.109, Y.137, P.140, L.141, S.143, V.147, F.172, M.173, F.176, Q.177, I.182, L.183, H.188, G.191, V.192, F.196, V.273, T.276, A.277, I.280
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.7, PHO.8, CLA.105, CLA.106
16 PLIP interactions:13 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N,- Hydrophobic interactions: A:F.109, A:P.140, A:M.173, A:F.176, A:Q.177, A:I.182, A:I.182, A:L.183, A:L.183, A:F.196, A:F.196, A:I.280, D:L.172, D:L.195, N:F.17
- Metal complexes: A:H.188
CLA.7: 18 residues within 4Å:- Chain A: Q.189, V.192, A.193, F.196, G.197, L.200, F.250, W.268
- Chain D: V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.6, DGD.81, CLA.105, PHO.107, LMG.115
12 PLIP interactions:6 interactions with chain A, 5 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.192, A:F.196, A:L.200, A:F.250, A:W.268, D:I.168, D:F.169, D:F.171, D:L.172, D:L.172
- pi-Stacking: A:F.196
- Metal complexes: H2O.5
CLA.9: 24 residues within 4Å:- Chain A: V.25, I.26, P.29, T.30, F.83, Y.84, P.85, I.86, W.87, Q.103, L.104, F.107, H.108, L.111
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.20
- Ligands: BCR.10, CLA.68, CLA.69
20 PLIP interactions:15 interactions with chain A, 5 interactions with chain H,- Hydrophobic interactions: A:I.26, A:P.29, A:P.29, A:T.30, A:F.83, A:P.85, A:I.86, A:W.87, A:W.87, A:L.104, A:F.107, A:L.111, H:V.11, H:F.15, H:F.15, H:V.20
- Hydrogen bonds: A:I.86, H:Y.9
- Salt bridges: A:H.108
- Metal complexes: A:H.108
CLA.26: 10 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, L.54
- Ligands: CLA.27, HTG.48, RRX.129, DMS.131
9 PLIP interactions:5 interactions with chain B, 3 interactions with chain G, 1 Ligand-Water interactions,- Hydrophobic interactions: B:W.184, B:P.186, B:F.189, B:F.189, B:F.189, G:F.40, G:F.40, G:L.54
- Metal complexes: H2O.5
CLA.27: 26 residues within 4Å:- Chain B: W.184, G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain D: V.144, I.149
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.26, CLA.28, CLA.30, DGD.128, RRX.129
22 PLIP interactions:16 interactions with chain B, 4 interactions with chain G, 2 interactions with chain D,- Hydrophobic interactions: B:W.184, B:F.189, B:F.189, B:F.189, B:A.199, B:H.200, B:A.203, B:A.204, B:V.207, B:F.245, B:F.246, B:F.246, B:F.249, B:F.249, B:V.250, G:F.37, G:F.40, G:I.44, G:I.44, D:V.144, D:I.149
- Metal complexes: B:H.200
CLA.28: 25 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.250, V.251, T.261
- Chain G: M.34, F.37, L.38, L.41
- Ligands: CLA.27, CLA.29, CLA.30, CLA.31, CLA.34, CLA.35
19 PLIP interactions:15 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:A.145, B:L.148, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:F.246, B:A.247, B:V.250, B:V.251, G:F.37, G:F.37, G:L.38, G:L.41
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.29: 24 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.144, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, F.461
- Ligands: UNL.24, CLA.28, CLA.30, CLA.31, CLA.32, CLA.36, CLA.37, CLA.38, CLA.40
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:F.64, B:L.147, B:L.148, B:V.244, B:A.247, B:F.457, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.30: 30 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, G.146, C.149, A.204, G.208
- Ligands: CLA.27, CLA.28, CLA.29, CLA.31, CLA.34, CLA.35, CLA.37, CLA.40, BCR.44, UNL.50
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:T.26, B:V.29, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142, B:A.145
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.31: 23 residues within 4Å:- Chain B: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: HTG.23, CLA.28, CLA.29, CLA.30, BCR.44, UNL.50
11 PLIP interactions:11 interactions with chain B,- Hydrophobic interactions: B:L.68, B:W.90, B:W.90, B:A.98, B:V.101, B:L.102, B:L.148, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.32: 28 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain D: F.186, M.271
- Chain K: F.30, F.34
- Chain L: F.14
- Ligands: CLA.29, CLA.38, BCR.42, BCR.43, LMG.46, PL9.110, LHG.112
12 PLIP interactions:8 interactions with chain B, 1 interactions with chain L, 2 interactions with chain K, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Y.39, B:F.60, B:F.324, B:W.449, B:W.449, B:W.449, L:F.14, K:F.30, K:F.34
- Hydrogen bonds: B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.13
CLA.33: 25 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: F.110, I.113, M.116, L.117, F.120, I.140
- Chain G: L.38, L.42
- Ligands: CLA.34, CLA.35, UNL.49, CLA.108, DGD.128
20 PLIP interactions:2 interactions with chain G, 8 interactions with chain D, 10 interactions with chain B,- Hydrophobic interactions: G:L.38, G:L.42, D:F.110, D:F.110, D:F.110, D:I.113, D:M.116, D:L.117, D:F.120, D:I.140, B:A.242, B:F.245, B:F.462, B:F.462, B:L.473
- Hydrogen bonds: B:S.238
- Water bridges: B:S.239
- Salt bridges: B:H.465
- pi-Cation interactions: B:H.465
- Metal complexes: B:H.465
CLA.34: 25 residues within 4Å:- Chain B: F.138, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain G: T.26, T.27, L.29, M.30, F.33, M.34, L.41, L.42
- Ligands: CLA.28, CLA.30, CLA.33, CLA.35, UNL.49, RRX.129
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:F.138, B:F.138, B:F.138, B:V.207, B:A.211, B:F.214, B:F.214, B:L.224, B:L.228, G:L.29, G:M.30, G:F.33, G:L.41
- Salt bridges: B:H.215
- Metal complexes: B:H.215
CLA.35: 20 residues within 4Å:- Chain B: L.134, M.137, F.138, H.141, L.142, A.145, M.230, I.233, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.28, CLA.30, CLA.33, CLA.34, CLA.37, CLA.40, RRX.129
10 PLIP interactions:9 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:F.138, B:M.230, B:I.233, B:T.235, B:A.243
- Hydrogen bonds: B:H.141
- Metal complexes: H2O.5
CLA.36: 21 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Ligands: CLA.29, CLA.37, CLA.38, CLA.39, LHG.45, LHG.112
11 PLIP interactions:11 interactions with chain B,- Hydrophobic interactions: B:W.4, B:L.237, B:L.237, B:I.241, B:F.461, B:F.463
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.37: 20 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, I.241, V.244
- Ligands: CLA.29, CLA.30, CLA.35, CLA.36, CLA.38, CLA.39, CLA.40
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:H.8, B:L.11, B:L.11, B:I.12, B:L.18, B:H.22, B:H.25, B:T.26, B:I.233, B:I.233, B:V.236, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.38: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.29, CLA.32, CLA.36, CLA.37, CLA.39, BCR.42, BCR.43, LMG.46, LHG.112
9 PLIP interactions:9 interactions with chain B,- Hydrophobic interactions: B:V.29, B:V.29, B:W.32, B:W.32, B:F.461, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.39: 19 residues within 4Å:- Chain B: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.7, V.9
- Chain L: F.21, L.25
- Ligands: CLA.36, CLA.37, CLA.38, BCR.42, LHG.45, UNL.62
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain L,- Hydrophobic interactions: B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:F.21, L:L.25
- Metal complexes: B:H.8
CLA.40: 17 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.13, N.14
- Ligands: CLA.29, CLA.30, CLA.35, CLA.37, CLA.41
9 PLIP interactions:3 interactions with chain G, 6 interactions with chain B,- Hydrophobic interactions: G:L.6, G:L.13, G:N.14, B:I.19, B:L.132, B:I.140, B:L.144
- Hydrogen bonds: B:H.22
- Metal complexes: B:H.141
CLA.41: 14 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119, L.121, F.122
- Chain G: T.4, L.6, G.7, L.10
- Ligands: CLA.40, BCR.44
12 PLIP interactions:4 interactions with chain G, 8 interactions with chain B,- Hydrophobic interactions: G:L.6, G:L.10, B:I.19, B:L.23, B:W.112, B:W.112, B:L.119, B:F.122
- Hydrogen bonds: G:T.4
- Water bridges: G:L.6
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
CLA.64: 22 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, L.167, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.65, CLA.66, CLA.69, CLA.70, BCR.78
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:L.150, C:A.154, C:L.157, C:I.206, C:I.222, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278, C:V.278
- Hydrogen bonds: C:Y.279
- Metal complexes: C:H.219
CLA.65: 23 residues within 4Å:- Chain C: W.45, I.69, H.73, L.77, G.153, L.156, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.64, CLA.66, CLA.67, CLA.73, CLA.75, HTG.85
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:W.45, C:W.45, C:I.69, C:L.77, C:F.164, C:L.261, C:A.268, C:L.408, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.66: 18 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, L.77, W.79, V.96, H.100
- Ligands: CLA.64, CLA.65, CLA.70, CLA.72, CLA.73, CLA.75, CLA.76, LMG.83
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:W.79
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.67: 21 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, V.414, F.418
- Chain J: P.17, V.21
- Ligands: CLA.65, CLA.71, CLA.73, DGD.80, DGD.81, LMG.82, LHG.114
12 PLIP interactions:10 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:F.52, C:I.69, C:I.69, C:W.407, C:W.407, C:L.408, C:V.414, C:F.418, C:F.418, C:F.418, J:V.21
- Metal complexes: H2O.22
CLA.68: 23 residues within 4Å:- Chain A: F.23, L.111, C.115, M.117, G.118, W.121
- Chain C: F.246, S.255, Y.256, G.259, A.260, M.263, H.423, L.424, A.427, R.431
- Chain H: V.16, F.19, F.23
- Ligands: CLA.9, LMG.12, CLA.70, BCR.78
18 PLIP interactions:6 interactions with chain A, 3 interactions with chain H, 9 interactions with chain C,- Hydrophobic interactions: A:F.23, A:L.111, A:W.121, A:W.121, A:W.121, A:W.121, H:V.16, H:F.19, H:F.23, C:F.246, C:Y.256, C:Y.256, C:L.424
- Hydrogen bonds: C:Y.256
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
CLA.69: 22 residues within 4Å:- Chain C: L.143, L.147, L.195, W.205, I.225, C.226, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.9, CLA.64, CLA.70, BCR.78, DGD.79, LMT.84
9 PLIP interactions:9 interactions with chain C,- Hydrophobic interactions: C:L.147, C:L.147, C:W.205, C:I.225, C:W.232, C:W.241
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.70: 20 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, I.222, F.246, W.248, Y.253, Y.256, S.257, A.260, M.264
- Ligands: CLA.64, CLA.66, CLA.68, CLA.69, CLA.72, BCR.78
14 PLIP interactions:13 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.150, C:I.222, C:F.246, C:F.246, C:W.248, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256
- Metal complexes: H2O.15
CLA.71: 23 residues within 4Å:- Chain C: F.15, W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, V.421, G.422, W.425, H.426, R.429
- Ligands: CLA.67, CLA.72, CLA.73, CLA.74, DGD.80, LHG.114, UNL.120
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:L.258, C:F.419, C:F.419, C:V.421, C:W.425
- Hydrogen bonds: C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.72: 24 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, H.146, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.66, CLA.70, CLA.71, CLA.73, CLA.74, CLA.75
13 PLIP interactions:13 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:L.31, C:A.34, C:H.38, C:Y.131, C:W.133, C:W.133, C:L.150, C:Y.253, C:L.254
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.73: 18 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, V.21, L.24
- Ligands: CLA.65, CLA.66, CLA.67, CLA.71, CLA.72, CLA.74, LHG.114
12 PLIP interactions:9 interactions with chain C, 3 interactions with chain J,- Hydrophobic interactions: C:L.41, C:I.42, C:W.45, C:L.261, C:F.418, C:F.419, C:F.419, J:P.20, J:V.21, J:L.24
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.74: 35 residues within 4Å:- Chain C: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, L.41, A.105, G.108, F.109, V.112, A.115, I.116
- Chain J: F.23, L.24, A.27, F.28, W.30, Q.31
- Chain Q: I.18, I.19, L.22, N.28, L.29
- Chain S: M.19, V.20, A.28
- Ligands: CLA.71, CLA.72, CLA.73, BCR.140, LMT.175
22 PLIP interactions:1 interactions with chain S, 3 interactions with chain Q, 11 interactions with chain C, 7 interactions with chain J,- Hydrophobic interactions: S:A.28, Q:I.18, Q:I.19, Q:L.29, C:W.17, C:L.24, C:A.34, C:L.41, C:F.109, C:V.112, C:A.115, C:I.116, C:I.116, J:F.23, J:F.23, J:L.24, J:A.27, J:F.28, J:W.30
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
- pi-Stacking: J:W.30
CLA.75: 17 residues within 4Å:- Chain C: L.32, H.35, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, V.149, G.153
- Ligands: CLA.65, CLA.66, CLA.72, CLA.76, BCR.77
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:L.32, C:H.35, C:F.128, C:Y.131, C:I.142, C:I.142, C:F.145, C:F.145, C:V.149
- Water bridges: C:A.39
- Metal complexes: C:H.146
CLA.76: 18 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.66, CLA.75, BCR.77, LMG.83, UNL.87, UNL.89, LMT.175
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.36, C:V.106, C:L.107, C:Y.113, C:Y.113, C:L.122, C:Y.125, C:F.129, C:F.129, C:F.129, C:F.129
- Hydrogen bonds: C:Y.113
- Metal complexes: C:H.114
CLA.105: 28 residues within 4Å:- Chain A: M.173, F.196
- Chain D: L.35, L.112, P.139, V.142, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.6, CLA.7, PL9.11, CLA.106, PHO.107
14 PLIP interactions:13 interactions with chain D, 1 interactions with chain A,- Hydrophobic interactions: D:L.35, D:L.112, D:V.142, D:F.171, D:F.175, D:Q.176, D:W.181, D:V.191, D:V.194, D:L.195, D:L.269, A:F.196
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.106: 18 residues within 4Å:- Chain A: V.147, M.162, I.166, T.169, F.170, F.172, M.173
- Chain D: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.6, PHO.8, UNL.21, LHG.45, CLA.105, PL9.110
5 PLIP interactions:3 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.147, A:F.170, A:F.172, D:V.191
- Metal complexes: H2O.4
CLA.108: 26 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, G.99, T.102, F.103, L.106, H.107
- Chain G: L.38, L.42
- Chain R: F.10, G.12, L.13, G.16, A.17, V.19
- Ligands: CLA.33, UNL.174
16 PLIP interactions:10 interactions with chain D, 5 interactions with chain R, 1 interactions with chain G,- Hydrophobic interactions: D:L.26, D:P.29, D:L.33, D:W.83, D:W.83, D:L.106, R:F.10, R:L.13, R:L.13, R:A.17, R:V.19, G:L.38
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
- 2 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.8: 27 residues within 4Å:- Chain A: L.31, A.34, T.35, F.38, I.105, F.109, Y.116, Q.120, A.136, Y.137, P.140, F.148, M.162, G.165, V.195, P.269, V.273
- Chain D: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.6, UNL.21, CLA.106
17 PLIP interactions:15 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.31, A:A.34, A:F.38, A:I.105, A:F.109, A:A.136, A:Y.137, A:Y.137, A:P.140, A:F.148, A:V.195, A:P.269, A:V.273, D:L.195, D:A.202
- Hydrogen bonds: A:Q.120, A:Y.137
PHO.107: 32 residues within 4Å:- Chain A: F.196, A.199, L.200, M.204, F.245, L.248, I.249
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, A.138, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.7, PL9.11, CLA.105
23 PLIP interactions:21 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.31, D:A.34, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:F.136, D:A.138, D:P.139, D:F.143, D:V.165, D:P.265, D:L.269, A:F.196, A:A.199
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136
- 10 x BCR: BETA-CAROTENE(Non-covalent)
BCR.10: 17 residues within 4Å:- Chain A: V.25, I.28, L.32, A.33, I.36, C.37, I.40, A.41, A.45, I.86, W.95, L.96, P.101
- Chain H: F.15
- Ligands: CLA.9, UNL.134, HTG.146
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain H- Hydrophobic interactions: A:V.25, A:I.28, A:L.32, A:A.33, A:I.40, A:A.41, A:I.86, A:W.95, A:W.95, A:L.96, A:P.101, H:F.15
BCR.42: 13 residues within 4Å:- Chain B: M.24, L.28, F.107, C.111, W.114
- Chain L: A.10, L.13
- Ligands: CLA.32, CLA.38, CLA.39, BCR.43, LMG.46, UNL.62
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain L- Hydrophobic interactions: B:L.28, B:L.28, B:F.107, B:W.114, B:W.114, L:A.10, L:L.13
BCR.43: 14 residues within 4Å:- Chain B: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: CLA.32, CLA.38, BCR.42, LMG.46, UNL.62
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.28, B:I.100, B:L.108
BCR.44: 11 residues within 4Å:- Chain B: L.102, L.105, L.108, A.109, C.111, W.112, V.115
- Ligands: CLA.30, CLA.31, CLA.41, UNL.50
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.102, B:L.108, B:L.108, B:W.112, B:V.115
BCR.77: 17 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Chain J: Y.6
- Chain S: V.51, V.54, G.55, N.58, F.59
- Ligands: CLA.75, CLA.76, LMG.83, UNL.89
11 PLIP interactions:3 interactions with chain S, 8 interactions with chain C- Hydrophobic interactions: S:V.54, S:N.58, S:F.59, C:F.94, C:V.98, C:I.102, C:V.106, C:V.106, C:L.107, C:F.129, C:F.129
BCR.78: 19 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.64, CLA.68, CLA.69, CLA.70
11 PLIP interactions:9 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: C:I.191, C:F.192, C:Y.194, C:L.195, C:I.206, C:V.209, C:I.222, C:I.222, C:F.246, H:F.23, H:L.24
BCR.109: 17 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, F.103
- Chain F: P.18, T.19, F.22, L.23, I.26
- Chain I: V.21, V.25
- Ligands: LMG.115, DMS.119
14 PLIP interactions:6 interactions with chain F, 6 interactions with chain D, 2 interactions with chain I- Hydrophobic interactions: F:P.18, F:T.19, F:F.22, F:F.22, F:L.23, F:I.26, D:Y.32, D:L.33, D:L.39, D:F.91, D:F.103, D:F.103, I:V.21, I:V.25
BCR.140: 19 residues within 4Å:- Chain C: A.37, G.40, L.41, V.98, L.101, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.23, L.26, W.30
- Chain S: L.9, V.13, S.16, V.20
- Ligands: CLA.74, BCR.173
15 PLIP interactions:5 interactions with chain C, 3 interactions with chain S, 7 interactions with chain J- Hydrophobic interactions: C:A.37, C:L.41, C:V.98, C:A.105, C:A.115, S:L.9, S:V.13, S:V.20, J:Y.6, J:Y.6, J:F.23, J:F.23, J:F.23, J:L.26, J:W.30
BCR.157: 12 residues within 4Å:- Chain A: L.18
- Chain N: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21
- Ligands: UNL.21, LMT.144, UNL.159
7 PLIP interactions:6 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: N:A.11, N:I.14, N:A.15, N:F.18, N:F.18, N:I.21, A:L.18
BCR.173: 22 residues within 4Å:- Chain C: F.44, L.101
- Chain I: A.14, T.15, G.18, M.19
- Chain J: L.12, L.16, I.19, L.22, A.25, L.26, F.28, V.29
- Chain Q: I.11, G.12, G.15, P.16
- Chain S: S.16, F.17
- Ligands: UNL.88, BCR.140
12 PLIP interactions:8 interactions with chain J, 2 interactions with chain Q, 2 interactions with chain C- Hydrophobic interactions: J:L.12, J:L.16, J:I.19, J:I.19, J:L.22, J:A.25, J:L.26, J:V.29, Q:I.11, Q:P.16, C:F.44, C:L.101
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.11: 28 residues within 4Å:- Chain A: F.201, M.204, H.205, L.208, V.209, A.241, H.242, F.245, A.253, S.254, F.255, L.261, F.264
- Chain D: G.24, I.25, F.28, P.29, Y.32, L.35
- Chain F: V.7, A.11, T.14, L.15
- Chain R: T.23
- Ligands: CLA.105, PHO.107, LHG.121, LHG.127
21 PLIP interactions:13 interactions with chain A, 2 interactions with chain F, 5 interactions with chain D, 1 interactions with chain R- Hydrophobic interactions: A:F.201, A:H.205, A:L.208, A:L.208, A:L.208, A:V.209, A:H.242, A:F.245, A:L.261, A:L.261, A:F.264, A:F.264, F:V.7, F:L.15, D:F.28, D:F.28, D:P.29, D:Y.32, D:L.35, R:T.23
- Hydrogen bonds: A:F.255
PL9.110: 31 residues within 4Å:- Chain A: F.42, I.43, I.67
- Chain D: M.188, M.189, A.192, G.193, H.204, T.207, Y.234, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.22, V.25, L.26, L.28
- Chain N: F.10
- Ligands: CLA.32, LHG.45, CLA.106, LHG.113
26 PLIP interactions:14 interactions with chain D, 4 interactions with chain K, 4 interactions with chain N, 4 interactions with chain A- Hydrophobic interactions: D:M.189, D:A.192, D:T.207, D:Y.234, D:W.243, D:F.251, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, K:L.22, K:V.25, K:L.26, K:L.28, N:F.10, N:F.10, N:F.10, N:F.10, A:F.42, A:F.42, A:I.43, A:I.67
- Hydrogen bonds: D:T.207, D:F.251
- 5 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.12: 19 residues within 4Å:- Chain A: F.83, W.87, E.88, F.107, L.110, F.145
- Chain C: L.196, K.197, S.198, E.203, W.205, M.263, F.266
- Chain H: K.5, Y.9
- Ligands: DMS.18, CLA.68, DGD.79, DMS.100
14 PLIP interactions:5 interactions with chain C, 5 interactions with chain A, 4 interactions with chain H- Hydrophobic interactions: C:W.205, C:F.266, A:F.107, A:L.110, A:F.145
- Hydrogen bonds: C:E.203, A:W.87, A:E.88, H:K.5, H:K.5, H:Y.9, H:Y.9
- Water bridges: C:S.198, C:S.198
LMG.46: 18 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, F.452, A.453, V.456
- Chain D: I.274
- Chain K: F.34
- Chain L: N.4, L.6, A.10
- Ligands: CLA.32, CLA.38, BCR.42, BCR.43, LHG.45
11 PLIP interactions:8 interactions with chain B, 1 interactions with chain K, 1 interactions with chain L, 1 interactions with chain D- Hydrophobic interactions: B:F.452, B:A.453, B:V.456, K:F.34, D:I.274
- Hydrogen bonds: B:T.326, B:T.326, B:K.331, L:N.4
- Water bridges: B:T.326, B:K.331
LMG.82: 7 residues within 4Å:- Chain C: H.56, Q.66
- Chain J: D.14
- Chain Q: Q.4
- Ligands: CLA.67, DGD.80, LMT.137
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:H.56
LMG.83: 16 residues within 4Å:- Chain C: W.79, D.89, F.91, P.92, V.95, V.96, V.99, H.100, S.103
- Chain S: N.58, F.59, V.62
- Ligands: CLA.66, CLA.76, BCR.77, HTG.85
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain S- Hydrophobic interactions: C:W.79, C:P.92, C:V.95, C:V.96, C:V.99
- Hydrogen bonds: C:D.89, S:N.58, S:V.62
LMG.115: 19 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: T.19, I.26, M.29, Q.30
- Chain I: F.28, G.31, A.32, L.36, G.37
- Ligands: CLA.7, DGD.81, BCR.109, MG.136
11 PLIP interactions:2 interactions with chain I, 7 interactions with chain D, 2 interactions with chain F- Hydrogen bonds: I:G.31, D:G.60, D:F.63, F:M.29, F:Q.30
- Water bridges: I:G.37, D:N.62
- Hydrophobic interactions: D:F.63, D:F.63, D:F.63, D:F.63
- 25 x UNL: UNKNOWN LIGAND(Non-functional Binders)
UNL.13: 4 residues within 4Å:- Ligands: LMT.1, UNL.15, UNL.21, UNL.159
Ligand excluded by PLIPUNL.14: 3 residues within 4Å:- Chain A: W.4
- Chain H: F.21
- Ligands: LMT.84
Ligand excluded by PLIPUNL.15: 8 residues within 4Å:- Chain A: L.3, R.6, F.7, W.10
- Ligands: UNL.13, UNL.21, UNL.133, UNL.134
Ligand excluded by PLIPUNL.21: 15 residues within 4Å:- Chain A: N.16, R.17, L.18, V.20, I.28, L.31, L.32, T.35
- Chain N: F.22
- Ligands: PHO.8, UNL.13, UNL.15, CLA.106, BCR.157, UNL.159
Ligand excluded by PLIPUNL.24: 4 residues within 4Å:- Chain B: F.155, L.160, F.161
- Ligands: CLA.29
Ligand excluded by PLIPUNL.49: 14 residues within 4Å:- Chain B: A.227, R.229
- Chain D: D.9, K.13, W.22
- Chain G: A.31, M.34, G.35, L.38
- Chain R: F.24
- Ligands: CLA.33, CLA.34, LMT.47, UNL.117
Ligand excluded by PLIPUNL.50: 5 residues within 4Å:- Chain B: W.90, L.148
- Ligands: CLA.30, CLA.31, BCR.44
Ligand excluded by PLIPUNL.62: 7 residues within 4Å:- Chain B: R.17, L.28, S.103, W.114
- Ligands: CLA.39, BCR.42, BCR.43
Ligand excluded by PLIPUNL.87: 1 residues within 4Å:- Ligands: CLA.76
Ligand excluded by PLIPUNL.88: 4 residues within 4Å:- Chain C: W.17
- Chain J: F.36
- Ligands: UNL.120, BCR.173
Ligand excluded by PLIPUNL.89: 4 residues within 4Å:- Chain C: V.106, Y.125
- Ligands: CLA.76, BCR.77
Ligand excluded by PLIPUNL.117: 4 residues within 4Å:- Chain D: W.22, R.124
- Chain R: L.20
- Ligands: UNL.49
Ligand excluded by PLIPUNL.120: 15 residues within 4Å:- Chain A: L.190, G.194, S.260, F.263, F.264, A.267, W.268, V.271, G.272
- Chain C: W.18
- Chain D: F.222
- Chain J: F.28
- Ligands: CLA.71, UNL.88, LHG.114
Ligand excluded by PLIPUNL.122: 2 residues within 4Å:- Chain E: F.7
- Ligands: LHG.121
Ligand excluded by PLIPUNL.123: 2 residues within 4Å:- Chain E: F.28, W.32
Ligand excluded by PLIPUNL.130: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPUNL.132: 5 residues within 4Å:- Chain H: T.3, T.7, I.10, F.14
- Ligands: UNL.133
Ligand excluded by PLIPUNL.133: 4 residues within 4Å:- Chain H: V.11
- Ligands: UNL.15, UNL.132, UNL.135
Ligand excluded by PLIPUNL.134: 5 residues within 4Å:- Chain H: M.1, L.4
- Ligands: BCR.10, UNL.15, UNL.135
Ligand excluded by PLIPUNL.135: 5 residues within 4Å:- Chain H: M.1, T.3, L.4
- Ligands: UNL.133, UNL.134
Ligand excluded by PLIPUNL.138: 9 residues within 4Å:- Chain I: P.9, W.11
- Chain J: A.33, G.35, F.36
- Chain Q: A.23, R.26, G.27, L.29
Ligand excluded by PLIPUNL.139: 2 residues within 4Å:- Chain I: G.26, Y.30
Ligand excluded by PLIPUNL.159: 8 residues within 4Å:- Chain N: V.7, F.10, A.11
- Ligands: LMT.1, UNL.13, UNL.21, LMT.144, BCR.157
Ligand excluded by PLIPUNL.160: 6 residues within 4Å:- Chain O: N.21, Y.48, E.49, V.77, T.78, E.79
Ligand excluded by PLIPUNL.174: 7 residues within 4Å:- Chain D: W.83, G.89
- Chain R: I.11, S.15, G.16, L.20
- Ligands: CLA.108
Ligand excluded by PLIP- 47 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.16: 3 residues within 4Å:- Chain A: E.88, A.89, A.90
Ligand excluded by PLIPDMS.17: 5 residues within 4Å:- Chain A: W.87, E.88
- Chain H: E.2, K.5
- Ligands: DMS.18
Ligand excluded by PLIPDMS.18: 4 residues within 4Å:- Chain A: E.88
- Chain M: G.9
- Ligands: LMG.12, DMS.17
Ligand excluded by PLIPDMS.19: 4 residues within 4Å:- Chain A: E.216, T.217, E.221, K.228
Ligand excluded by PLIPDMS.20: 7 residues within 4Å:- Chain A: N.305, I.310
- Chain D: G.52, L.53, Q.322, P.325
- Chain E: I.60
Ligand excluded by PLIPDMS.51: 6 residues within 4Å:- Chain B: W.274, D.275, S.277, R.357, M.358, P.359
Ligand excluded by PLIPDMS.52: 6 residues within 4Å:- Chain B: I.12, N.13, P.130, A.131, L.132, I.233
Ligand excluded by PLIPDMS.53: 7 residues within 4Å:- Chain B: R.384, A.385, E.386, S.387, Q.393
- Chain O: L.10, Y.14
Ligand excluded by PLIPDMS.54: 4 residues within 4Å:- Chain B: L.41, A.42, T.43, F.44
Ligand excluded by PLIPDMS.55: 7 residues within 4Å:- Chain B: W.467, R.471, F.474, F.478
- Chain D: P.130, Y.131, I.134
Ligand excluded by PLIPDMS.56: 5 residues within 4Å:- Chain B: V.115, Y.116, W.117, D.118
- Chain G: R.2
Ligand excluded by PLIPDMS.58: 5 residues within 4Å:- Chain B: K.331, N.437
- Chain D: I.293
- Chain L: E.2, V.3
Ligand excluded by PLIPDMS.59: 4 residues within 4Å:- Chain B: F.354, R.356, T.370
- Ligands: DMS.60
Ligand excluded by PLIPDMS.60: 7 residues within 4Å:- Chain B: R.356, I.368, T.370
- Chain D: N.328, V.330, F.331
- Ligands: DMS.59
Ligand excluded by PLIPDMS.90: 4 residues within 4Å:- Chain C: W.171, N.210, R.344
- Chain M: D.5
Ligand excluded by PLIPDMS.91: 5 residues within 4Å:- Chain C: G.202, D.342, R.344
- Chain M: Y.4, V.8
Ligand excluded by PLIPDMS.92: 2 residues within 4Å:- Chain C: G.174, W.369
Ligand excluded by PLIPDMS.93: 5 residues within 4Å:- Chain C: P.62, G.84, G.85, E.282
- Ligands: DMS.168
Ligand excluded by PLIPDMS.94: 6 residues within 4Å:- Chain C: K.305, E.371
- Chain P: Q.86, E.87, I.88, E.90
Ligand excluded by PLIPDMS.96: 7 residues within 4Å:- Chain C: V.448, L.449, M.451, S.453
- Chain D: R.241
- Chain N: I.29
- Ligands: DMS.98
Ligand excluded by PLIPDMS.97: 6 residues within 4Å:- Chain C: A.434, A.435
- Chain H: P.28, R.34, K.35, D.36
Ligand excluded by PLIPDMS.98: 5 residues within 4Å:- Chain C: L.449, S.450, M.451, P.452
- Ligands: DMS.96
Ligand excluded by PLIPDMS.99: 3 residues within 4Å:- Chain C: E.123, E.124, S.127
Ligand excluded by PLIPDMS.100: 5 residues within 4Å:- Chain C: L.196, K.197, S.198, E.203
- Ligands: LMG.12
Ligand excluded by PLIPDMS.101: 6 residues within 4Å:- Chain C: P.83, G.84, E.86
- Chain P: D.99, P.102, R.105
Ligand excluded by PLIPDMS.102: 4 residues within 4Å:- Chain C: V.190, G.193, Y.194, K.197
Ligand excluded by PLIPDMS.118: 4 residues within 4Å:- Chain D: V.330, F.331
- Chain P: V.135, Y.136
Ligand excluded by PLIPDMS.119: 4 residues within 4Å:- Chain D: Y.32
- Chain F: P.18
- Ligands: BCR.109, DGD.111
Ligand excluded by PLIPDMS.125: 3 residues within 4Å:- Chain E: R.58
- Chain P: G.127, D.128
Ligand excluded by PLIPDMS.131: 2 residues within 4Å:- Chain G: F.33
- Ligands: CLA.26
Ligand excluded by PLIPDMS.148: 4 residues within 4Å:- Chain A: P.47, P.56
- Chain D: E.300
- Chain M: R.112
Ligand excluded by PLIPDMS.149: 3 residues within 4Å:- Chain M: T.45, F.47, L.67
Ligand excluded by PLIPDMS.150: 6 residues within 4Å:- Chain M: Y.27, R.204, T.205, I.240, E.241, P.242
Ligand excluded by PLIPDMS.151: 4 residues within 4Å:- Chain M: E.177, E.178, A.180, R.181
Ligand excluded by PLIPDMS.152: 2 residues within 4Å:- Chain M: F.187, L.189
Ligand excluded by PLIPDMS.153: 5 residues within 4Å:- Chain M: N.121, V.123, E.142, N.144, K.191
Ligand excluded by PLIPDMS.154: 6 residues within 4Å:- Chain M: Q.193, I.194, S.195, E.213, S.214, E.215
Ligand excluded by PLIPDMS.155: 6 residues within 4Å:- Chain M: K.50, E.51, E.52, E.111, H.228
- Ligands: DMS.156
Ligand excluded by PLIPDMS.156: 2 residues within 4Å:- Chain M: A.108
- Ligands: DMS.155
Ligand excluded by PLIPDMS.161: 3 residues within 4Å:- Chain O: V.43, A.46, R.90
Ligand excluded by PLIPDMS.162: 4 residues within 4Å:- Chain O: P.47, Y.48, E.49, D.53
Ligand excluded by PLIPDMS.163: 3 residues within 4Å:- Chain M: N.121
- Chain O: V.85, E.86
Ligand excluded by PLIPDMS.166: 5 residues within 4Å:- Chain P: P.11, N.13, S.14, D.67, N.68
Ligand excluded by PLIPDMS.167: 5 residues within 4Å:- Chain P: E.2, L.3, T.4, P.5, E.23
Ligand excluded by PLIPDMS.168: 5 residues within 4Å:- Chain C: R.372, E.376
- Chain P: I.100, F.101
- Ligands: DMS.93
Ligand excluded by PLIPDMS.169: 2 residues within 4Å:- Chain F: R.34
- Chain P: L.27
Ligand excluded by PLIPDMS.170: 5 residues within 4Å:- Chain O: A.26, I.29, K.97
- Chain P: S.51
- Ligands: CL.164
Ligand excluded by PLIP- 10 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.22: 6 residues within 4Å:- Chain B: W.74, D.86, P.87, G.88, F.89
- Ligands: HTG.23
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.74
- Hydrogen bonds: B:D.86, B:D.86, B:G.88
HTG.23: 5 residues within 4Å:- Chain B: D.86, G.88, F.89
- Ligands: HTG.22, CLA.31
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.89
- Hydrogen bonds: B:F.89
HTG.48: 3 residues within 4Å:- Chain B: W.184, I.206
- Ligands: CLA.26
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.184, B:W.184, B:W.184, B:I.206
HTG.61: 11 residues within 4Å:- Chain B: D.333, K.340, S.418, Y.419, K.422, E.430, F.431, T.433
- Chain M: Q.173, K.175, E.176
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain M- Hydrophobic interactions: B:Y.419
- Hydrogen bonds: B:D.333, B:K.340, B:K.340, B:F.431, M:K.175, M:K.175
HTG.85: 5 residues within 4Å:- Chain C: W.79, F.163, F.164
- Ligands: CLA.65, LMG.83
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:W.79, C:F.163
HTG.86: 1 residues within 4Å:- Chain C: T.182
No protein-ligand interaction detected (PLIP)HTG.103: 4 residues within 4Å:- Chain C: L.186, P.188, W.221, L.224
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.224
HTG.116: 5 residues within 4Å:- Chain D: G.3, W.4
- Chain G: W.24, P.28
- Ligands: LMT.47
1 PLIP interactions:1 interactions with chain D- Water bridges: D:G.3
HTG.146: 5 residues within 4Å:- Chain A: Y.63
- Chain M: G.109, G.110
- Ligands: LMT.1, BCR.10
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain M- Water bridges: A:D.93, M:Q.106
HTG.171: 9 residues within 4Å:- Chain P: N.13, S.14, E.15, P.64, P.65, N.68, E.70, G.71, D.74
6 PLIP interactions:6 interactions with chain P- Hydrogen bonds: P:S.14, P:S.14, P:E.15, P:P.65, P:N.68, P:D.74
- 4 x CA: CALCIUM ION(Non-covalent)
CA.25: 2 residues within 4Å:- Chain B: E.434, N.437
No protein-ligand interaction detected (PLIP)CA.63: 5 residues within 4Å:- Chain C: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:F.4, C:T.6, C:E.11, C:S.12, H2O.21
CA.147: 3 residues within 4Å:- Chain M: T.135, N.197, V.198
5 PLIP interactions:2 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: M:T.135, M:V.198, H2O.32, H2O.35, H2O.36
CA.172: 1 residues within 4Å:- Chain P: E.2
4 PLIP interactions:1 interactions with chain P, 3 Ligand-Water interactions- Metal complexes: P:E.2, H2O.29, H2O.40, H2O.42
- 6 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.45: 25 residues within 4Å:- Chain A: S.222, N.224
- Chain B: P.3, W.4, Y.5
- Chain D: A.192, W.256, F.263
- Chain K: E.10, L.11, N.12, S.15, L.18, G.19, L.21, V.25
- Chain L: P.18, F.21
- Ligands: CLA.36, CLA.39, LMG.46, CLA.106, PL9.110, LHG.112, LHG.113
14 PLIP interactions:3 interactions with chain D, 5 interactions with chain K, 1 interactions with chain L, 3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: D:A.192, D:F.263, D:F.263, K:L.21, K:V.25, L:P.18
- Hydrogen bonds: K:E.10, K:N.12, K:S.15, A:S.222, A:S.222, A:N.224, B:W.4, B:Y.5
LHG.112: 22 residues within 4Å:- Chain A: S.222, N.224
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467, F.478
- Chain D: Y.131, I.134, W.256, F.259, T.267, W.270
- Chain K: L.22, I.23
- Chain L: P.18
- Ligands: CLA.32, CLA.36, CLA.38, LHG.45
12 PLIP interactions:4 interactions with chain D, 5 interactions with chain B, 1 interactions with chain K, 2 interactions with chain A- Hydrophobic interactions: D:W.270, B:W.4, B:L.460, B:F.463, K:I.23
- Hydrogen bonds: D:Y.131, A:S.222, A:N.224
- Water bridges: D:R.129, D:Y.131, B:R.6
- Salt bridges: B:R.6
LHG.113: 22 residues within 4Å:- Chain A: M.27, R.119
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.12, T.14, S.15, Y.17, L.18, L.21
- Chain N: F.10, F.17, A.20
- Ligands: LHG.45, PL9.110
16 PLIP interactions:8 interactions with chain D, 3 interactions with chain K, 5 interactions with chain N- Hydrophobic interactions: D:I.249, D:F.251, D:F.251, D:F.260, D:F.260, K:L.21, N:F.10, N:F.17, N:F.17, N:F.17, N:A.20
- Hydrogen bonds: D:S.252, D:S.252, D:N.253, K:N.12, K:N.12
LHG.114: 20 residues within 4Å:- Chain A: R.130, W.132, F.263, A.266, W.274
- Chain C: F.15, W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: CLA.67, CLA.71, CLA.73, DGD.81, UNL.120
13 PLIP interactions:5 interactions with chain A, 4 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: A:F.263, A:A.266, A:W.274, C:W.18, C:W.18
- Water bridges: A:R.130
- Salt bridges: A:R.130
- Hydrogen bonds: C:R.429, C:R.429, D:N.210, D:A.219, D:S.220, D:T.221
LHG.121: 13 residues within 4Å:- Chain A: L.248, F.250, Y.252
- Chain D: F.17, L.27, R.118
- Chain E: P.6, F.7, S.8
- Chain F: R.8, A.11
- Ligands: PL9.11, UNL.122
7 PLIP interactions:3 interactions with chain E, 1 interactions with chain A, 2 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: E:F.7, A:Y.252, D:F.17, D:L.27, F:A.11
- Hydrogen bonds: E:F.7, E:S.8
LHG.127: 14 residues within 4Å:- Chain D: W.11, R.14, R.16
- Chain E: T.2, G.3, E.4
- Chain F: F.5, T.6, V.7, V.10
- Chain R: T.23, I.30, D.34
- Ligands: PL9.11
9 PLIP interactions:5 interactions with chain F, 2 interactions with chain D, 1 interactions with chain R, 1 interactions with chain E- Hydrophobic interactions: F:F.5, F:V.10, F:V.10, R:I.30
- Hydrogen bonds: F:F.5, F:V.7, E:G.3
- Salt bridges: D:R.14, D:R.16
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.57: 3 residues within 4Å:- Chain B: Q.408, T.409, F.410
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.409
GOL.95: 9 residues within 4Å:- Chain A: L.331, L.333
- Chain C: M.378, T.379, H.380, A.381, G.391, E.395
- Chain P: K.47
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain P- Hydrogen bonds: C:T.379, C:A.381, P:K.47, P:K.47
- Water bridges: C:L.383
GOL.124: 1 residues within 4Å:- Chain E: V.18
No protein-ligand interaction detected (PLIP)- 5 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.79: 31 residues within 4Å:- Chain A: L.81, S.138, L.141, A.142, F.145, I.153
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, M.263, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, F.417, L.420
- Ligands: LMG.12, CLA.69
23 PLIP interactions:5 interactions with chain A, 18 interactions with chain C- Hydrophobic interactions: A:L.141, A:A.142, A:F.145, A:F.145, A:I.153, C:F.200, C:F.200, C:W.205, C:V.207, C:F.266, C:L.420
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:T.277, C:T.277, C:D.342, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200, C:N.210, C:D.342
DGD.80: 19 residues within 4Å:- Chain A: H.185, F.187
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, S.411
- Chain I: F.29, Y.33
- Ligands: CLA.67, CLA.71, DGD.81, LMG.82, LMT.137
15 PLIP interactions:11 interactions with chain C, 2 interactions with chain I, 2 interactions with chain A- Hydrophobic interactions: C:L.386, C:W.407, I:F.29, A:F.187, A:F.187
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402
- Water bridges: C:Y.64, C:E.65, C:Q.66, C:G.67, I:Y.33
DGD.81: 29 residues within 4Å:- Chain A: P.186, Q.189, L.190, A.193, W.268, F.290, N.291, F.292, S.295
- Chain C: N.387, S.388, V.389, N.397, S.398, N.400
- Chain D: N.62
- Chain I: F.29, A.32, Y.33, G.37, S.38, S.39
- Chain P: Q.34
- Ligands: CLA.7, CLA.67, DGD.80, LHG.114, LMG.115, LMT.137
14 PLIP interactions:4 interactions with chain A, 3 interactions with chain I, 1 interactions with chain P, 6 interactions with chain C- Hydrophobic interactions: A:L.190, A:W.268, A:F.290
- Hydrogen bonds: A:S.295, I:G.37, P:Q.34, C:N.387, C:N.397, C:S.398, C:S.398
- Water bridges: I:Y.33, I:S.39, C:N.397, C:N.400
DGD.111: 7 residues within 4Å:- Chain D: G.89, D.90, F.91, T.92
- Chain E: D.42, V.43
- Ligands: DMS.119
5 PLIP interactions:1 interactions with chain E, 4 interactions with chain D- Hydrophobic interactions: E:V.43, D:F.91
- Hydrogen bonds: D:T.92, D:T.92, D:T.92
DGD.128: 29 residues within 4Å:- Chain B: Y.192, F.249, G.253, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain D: G.76, H.77, A.109, F.110, I.113, I.149, L.152, G.153, S.155, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.27, CLA.33
23 PLIP interactions:8 interactions with chain D, 7 interactions with chain G, 8 interactions with chain B- Hydrophobic interactions: D:A.109, D:F.110, D:I.113, D:I.149, D:L.152, D:L.281, G:Y.48, G:Y.48, G:Y.48, B:F.249, B:Y.257, B:T.451, B:A.455, B:F.462
- Hydrogen bonds: D:H.77, D:S.155, G:N.49, G:V.59, G:S.60, G:W.61, B:Y.192, B:S.276, B:S.276
- 1 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.104: 8 residues within 4Å:- Chain A: E.234, Y.236, H.262
- Chain D: H.204, Y.234, K.254, H.258
- Ligands: FE2.3
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:H.262, D:Y.234
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.126: 16 residues within 4Å:- Chain E: F.7, I.10, R.15, Y.16, I.19, H.20, T.23, I.24, L.27
- Chain F: R.8, W.9, V.12, H.13, A.16, V.17, I.20
18 PLIP interactions:10 interactions with chain E, 8 interactions with chain F,- Hydrophobic interactions: E:F.7, E:I.10, E:I.19, E:T.23, E:I.24, E:I.24, E:L.27, F:W.9, F:V.12, F:A.16, F:V.17
- Salt bridges: E:R.15, F:R.8
- pi-Stacking: E:Y.16, F:W.9, F:W.9
- Metal complexes: E:H.20, F:H.13
- 1 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
RRX.129: 15 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43
- Chain R: T.1, L.6, F.10
- Ligands: CLA.26, CLA.27, CLA.34, CLA.35
8 PLIP interactions:6 interactions with chain G, 2 interactions with chain R- Hydrophobic interactions: G:L.36, G:F.37, G:F.37, G:V.39, G:F.40, G:I.43, R:L.6, R:F.10
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.136: 5 residues within 4Å:- Chain I: G.31, A.34, G.35, L.36
- Ligands: LMG.115
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.31, I:A.34, I:L.36, H2O.29
MG.141: 3 residues within 4Å:- Chain J: D.10, D.14
- Chain Q: Q.4
4 PLIP interactions:1 interactions with chain J, 3 Ligand-Water interactions- Metal complexes: J:D.14, H2O.31, H2O.31, H2O.43
- 1 x HEC: HEME C(Non-covalent)
HEC.165: 25 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
16 PLIP interactions:16 interactions with chain P,- Hydrophobic interactions: P:A.36, P:T.46, P:N.49, P:L.52, P:L.54, P:L.72, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakajima, Y. et al., Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II inThermosynechococcus elongatus. J. Biol. Chem. (2018)
- Release Date
- 2018-08-01
- Peptides
- Photosystem II protein D1 1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center protein Ycf12: Q
Photosystem II reaction center X protein: R
Photosystem II reaction center protein Z: S - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
aB
bC
cD
dE
eF
fG
hH
iI
jJ
kK
lL
mM
oN
tO
uP
vQ
yR
xS
z - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 5zzn.2 (1 other biounit)
Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus
Photosystem II protein D1 1
Photosystem II CP47 reaction center protein
Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I
Photosystem II reaction center protein J
Photosystem II reaction center protein K
Photosystem II reaction center protein L
Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Photosystem II reaction center protein T
Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Photosystem II reaction center protein Ycf12
Photosystem II reaction center X protein
Photosystem II reaction center protein Z
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1izl.1 | 1mz4.1 | 1s5l.1 | 1s5l.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 | 5b66.1 | 5e79.1 more...less...5e7c.1 | 5gth.1 | 5gth.2 | 5gti.1 | 5gti.2 | 5h2f.1 | 5h2f.2 | 5kaf.1 | 5kai.1 | 5mx2.1 | 5mx2.2 | 5tis.1 | 5v2c.1 | 5ws5.1 | 5ws5.2 | 5ws6.1 | 5ws6.2 | 5zzn.1 | 6dhe.1 | 6dhf.1 | 6dhg.1 | 6dhh.1 | 6dho.1 | 6dhp.1 | 6jlj.1 | 6jlk.1 | 6jll.1 | 6jlm.1 | 6jln.1 | 6jlo.1 | 6jlp.1 | 6w1o.1 | 6w1p.1 | 6w1q.1 | 6w1r.1 | 6w1t.1 | 6w1u.1 | 6w1v.1 | 7cji.1 | 7cjj.1 | 7cou.1 | 7czl.1 | 7d1t.1 | 7d1u.1 | 7dxh.1 | 7eda.1 | 7nho.1 | 7nhp.1 | 7nhq.1 | 7rf1.1 | 7rf2.1 | 7rf3.1 | 7rf4.1 | 7rf5.1 | 7rf6.1 | 7rf7.1 | 7rf8.1 | 7yq2.1 | 7yq7.1 | 8ez5.1 | 8f4c.1 | 8f4d.1 | 8f4e.1 | 8f4f.1 | 8f4g.1 | 8f4h.1 | 8f4i.1 | 8f4j.1 | 8f4k.1 | 8gn0.1 | 8gn1.1 | 8gn2.1 | 8ir5.1 | 8ir6.1 | 8ir7.1 | 8ir8.1 | 8ir9.1 | 8ira.1 | 8irb.1 | 8irc.1 | 8ird.1 | 8ire.1 | 8irf.1 | 8irg.1 | 8irh.1 | 8iri.1 | 9evx.1