- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x OEX: CA-MN4-O5 CLUSTER(Non-covalent)
OEX.1: 10 residues within 4Å:- Chain A: D.160, V.175, E.179, H.322, E.323, H.327, D.332, A.334
- Chain C: E.336, R.339
18 PLIP interactions:10 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Water bridges: A:D.51
- Metal complexes: A:D.160, A:D.160, A:E.179, A:H.322, A:E.323, A:E.323, A:D.332, A:D.332, A:A.334, C:E.336, C:E.336, H2O.2, H2O.3, H2O.4, H2O.4
- Hydrogen bonds: C:R.339, C:R.339
- 2 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: N.171, H.322, E.323
- Chain D: K.307
Ligand excluded by PLIPCL.3: 5 residues within 4Å:- Chain A: H.327, N.328, F.329
- Chain C: G.335, E.336
Ligand excluded by PLIP- 35 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.4: 30 residues within 4Å:- Chain A: F.109, Y.137, P.140, L.141, S.143, V.147, F.172, M.173, I.174, F.176, Q.177, I.182, L.183, H.188, G.191, V.192, V.195, F.196, V.273, T.276, A.277, I.280
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.5, CLA.6, PHO.7, CLA.103, LHG.110
17 PLIP interactions:14 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N,- Hydrophobic interactions: A:F.109, A:P.140, A:M.173, A:F.176, A:Q.177, A:I.182, A:I.182, A:L.183, A:V.195, A:F.196, A:F.196, A:I.280, D:L.172, D:L.195, N:F.17
- Water bridges: A:I.280
- Metal complexes: A:H.188
CLA.5: 22 residues within 4Å:- Chain A: F.38, V.147, F.148, M.162, I.166, T.169, F.170, F.172, M.173
- Chain D: M.188, V.191, A.192, L.195, G.196, L.199
- Ligands: CLA.4, PHO.7, UNL.21, LHG.42, CLA.103, PL9.107, LHG.110
7 PLIP interactions:5 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:F.38, A:V.147, A:F.148, A:F.170, A:F.172, D:V.191
- Metal complexes: H2O.4
CLA.6: 20 residues within 4Å:- Chain A: Q.189, V.192, A.193, F.196, G.197, L.200, W.268
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.4, PL9.10, DGD.81, CLA.103, PHO.104, LMG.112, LHG.121
12 PLIP interactions:6 interactions with chain D, 5 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: D:F.147, D:I.168, D:F.169, D:F.171, D:L.172, D:L.172, A:V.192, A:F.196, A:L.200, A:W.268
- pi-Stacking: A:F.196
- Metal complexes: H2O.5
CLA.8: 27 residues within 4Å:- Chain A: V.25, I.26, P.29, T.30, F.83, Y.84, P.85, I.86, W.87, Q.103, L.104, F.107, H.108, L.111
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, F.19
- Ligands: BCR.9, LMG.11, CLA.69, CLA.70, DGD.79, LMT.84
19 PLIP interactions:15 interactions with chain A, 4 interactions with chain H,- Hydrophobic interactions: A:I.26, A:P.29, A:P.29, A:T.30, A:F.83, A:P.85, A:I.86, A:W.87, A:W.87, A:L.104, A:F.107, A:L.111, H:V.11, H:F.15, H:F.15, H:F.19
- Hydrogen bonds: A:I.86
- Salt bridges: A:H.108
- Metal complexes: A:H.108
CLA.23: 10 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, L.54
- Ligands: CLA.24, HTG.45, RRX.129, UNL.131
9 PLIP interactions:3 interactions with chain G, 5 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: G:F.40, G:F.40, G:L.54, B:W.184, B:P.186, B:F.189, B:F.189, B:F.189
- Metal complexes: H2O.6
CLA.24: 26 residues within 4Å:- Chain B: W.184, G.188, F.189, P.191, G.196, V.197, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain D: L.148
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.23, CLA.25, CLA.27, DGD.128, RRX.129
17 PLIP interactions:13 interactions with chain B, 3 interactions with chain G, 1 interactions with chain D,- Hydrophobic interactions: B:W.184, B:F.189, B:F.189, B:F.189, B:A.199, B:A.204, B:V.207, B:F.245, B:F.246, B:F.246, B:F.249, B:V.250, G:F.37, G:I.44, G:I.44, D:L.148
- Metal complexes: B:H.200
CLA.25: 21 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, H.200, H.201, F.246, A.247, V.250, V.251, T.261
- Chain G: M.34, F.37
- Ligands: CLA.24, CLA.26, CLA.27, CLA.28, CLA.31, CLA.32
16 PLIP interactions:14 interactions with chain B, 2 interactions with chain G,- Hydrophobic interactions: B:L.148, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:F.246, B:A.247, B:V.250, B:V.251, G:F.37, G:F.37
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.26: 23 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.144, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.25, CLA.27, CLA.29, CLA.33, CLA.34, CLA.35, CLA.37
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:L.144, B:L.147, B:L.148, B:V.244, B:A.247, B:A.248, B:V.251, B:F.457, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.27: 27 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, G.146, C.149, A.204
- Ligands: CLA.24, CLA.25, CLA.26, CLA.28, CLA.31, CLA.32, CLA.34, CLA.37, UNL.48
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:V.29, B:A.30, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:L.142, B:A.145
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.28: 23 residues within 4Å:- Chain B: L.68, G.69, V.70, F.89, W.90, V.95, A.98, H.99, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.25, CLA.27, BCR.41, UNL.48, HTG.50
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:L.68, B:F.89, B:F.89, B:W.90, B:W.90, B:W.90, B:W.90, B:A.98, B:L.102, B:L.105, B:L.148, B:L.148, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.29: 28 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453
- Chain D: F.186, T.267, M.271
- Chain K: F.30, F.34
- Chain L: F.14
- Ligands: CLA.26, CLA.35, BCR.39, BCR.40, LMG.43, PL9.107, LHG.109
15 PLIP interactions:1 interactions with chain L, 2 interactions with chain K, 9 interactions with chain B, 2 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: L:F.14, K:F.30, K:F.34, B:Y.39, B:F.60, B:F.60, B:F.324, B:W.449, B:A.453, D:F.186, D:T.267
- Hydrogen bonds: B:Y.39, B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.14
CLA.30: 25 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: F.110, I.113, M.116, L.117, I.140
- Chain G: L.38, L.42
- Ligands: CLA.31, CLA.32, UNL.47, CLA.105, DGD.128
19 PLIP interactions:10 interactions with chain B, 7 interactions with chain D, 2 interactions with chain G,- Hydrophobic interactions: B:A.242, B:F.245, B:F.246, B:F.462, B:F.462, B:L.473, D:F.110, D:F.110, D:I.113, D:I.113, D:M.116, D:L.117, D:I.140, G:L.38, G:L.42
- Hydrogen bonds: B:S.238
- Water bridges: B:S.239
- pi-Stacking: B:H.465
- Metal complexes: B:H.465
CLA.31: 24 residues within 4Å:- Chain B: F.138, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain G: T.26, T.27, L.29, M.30, F.33, M.34, L.42
- Ligands: CLA.25, CLA.27, CLA.30, CLA.32, UNL.47, RRX.129
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:F.138, B:F.138, B:F.138, B:V.207, B:A.211, B:F.214, B:F.214, B:L.224, B:L.228, G:L.29, G:M.30, G:F.33
- Salt bridges: B:H.215
- Metal complexes: B:H.215
- Hydrogen bonds: G:T.26
CLA.32: 20 residues within 4Å:- Chain B: H.22, L.134, M.137, F.138, H.141, L.142, A.145, L.228, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.25, CLA.27, CLA.30, CLA.31, CLA.34, CLA.37
10 PLIP interactions:9 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:F.138, B:A.145, B:L.228, B:M.230, B:T.235, B:A.243
- Metal complexes: H2O.6
CLA.33: 24 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, L.460, F.461, F.463, G.464, W.467, H.468, R.471, F.478
- Chain L: F.21
- Ligands: CLA.26, CLA.34, CLA.35, CLA.36, BCR.40, LHG.42, LHG.109
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain L,- Hydrophobic interactions: B:W.4, B:W.4, B:L.237, B:L.237, B:I.241, B:F.461, B:F.463, L:F.21
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.34: 20 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, I.241, V.244
- Ligands: CLA.26, CLA.27, CLA.32, CLA.33, CLA.35, CLA.36, CLA.37
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:H.8, B:I.12, B:L.18, B:H.22, B:H.25, B:T.26, B:V.236, B:L.237, B:L.237, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.35: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.26, CLA.29, CLA.33, CLA.34, CLA.36, BCR.39, BCR.40, LMG.43, LHG.109
8 PLIP interactions:8 interactions with chain B,- Hydrophobic interactions: B:V.29, B:V.29, B:W.32, B:W.32, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.36: 19 residues within 4Å:- Chain B: V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.7, V.9
- Chain L: L.13, F.21, L.25
- Ligands: CLA.33, CLA.34, CLA.35, BCR.39, LMG.43, UNL.64
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain L,- Hydrophobic interactions: B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:L.13, L:F.21, L:L.25
- Metal complexes: B:H.8
CLA.37: 18 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.10, L.13, N.14
- Ligands: CLA.26, CLA.27, CLA.32, CLA.34, CLA.38, BCR.41
9 PLIP interactions:3 interactions with chain G, 6 interactions with chain B,- Hydrophobic interactions: G:L.10, G:L.13, G:N.14, B:I.19, B:L.132, B:I.140, B:L.144
- Hydrogen bonds: B:H.22
- Metal complexes: B:H.141
CLA.38: 13 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119, F.122
- Chain G: T.4, L.6, G.7, L.10
- Ligands: CLA.37, BCR.41
13 PLIP interactions:9 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.23, B:A.109, B:W.112, B:W.112, B:L.119, B:F.122, G:L.6, G:L.10
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
- Hydrogen bonds: G:T.4
- Water bridges: G:L.6
CLA.65: 22 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, L.167, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.66, CLA.67, CLA.70, CLA.71, BCR.78
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:A.154, C:L.157, C:I.206, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278, C:V.278
- Metal complexes: C:H.219
CLA.66: 25 residues within 4Å:- Chain C: W.45, I.69, H.73, L.77, G.153, L.156, K.160, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.65, CLA.67, CLA.68, CLA.73, CLA.74, CLA.76, HTG.85
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:W.45, C:W.45, C:I.69, C:L.77, C:K.160, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.67: 17 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, L.77, W.79, V.96, H.100
- Ligands: CLA.65, CLA.66, CLA.71, CLA.73, CLA.74, CLA.76, LMG.83
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:W.79
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.68: 20 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.66, CLA.72, CLA.74, DGD.80, DGD.81, LMG.82, LHG.111
9 PLIP interactions:1 interactions with chain J, 7 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: J:V.21, C:F.52, C:I.69, C:W.407, C:W.407, C:L.408, C:F.418, C:F.418
- Metal complexes: H2O.22
CLA.69: 23 residues within 4Å:- Chain A: F.23, L.111, C.115, M.117, G.118, W.121
- Chain C: F.246, S.255, Y.256, G.259, A.260, H.423, L.424, A.427, R.431
- Chain H: V.12, V.16, F.19, F.23
- Ligands: CLA.8, LMG.11, CLA.71, BCR.78
17 PLIP interactions:6 interactions with chain A, 8 interactions with chain C, 3 interactions with chain H,- Hydrophobic interactions: A:F.23, A:F.23, A:L.111, A:W.121, A:W.121, A:W.121, C:F.246, C:Y.256, C:Y.256, C:L.424, H:V.12, H:F.19, H:F.23
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
CLA.70: 21 residues within 4Å:- Chain C: T.140, L.143, L.147, L.195, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.8, CLA.65, CLA.71, BCR.78, DGD.79, LMT.84
8 PLIP interactions:8 interactions with chain C,- Hydrophobic interactions: C:T.140, C:L.147, C:L.147, C:I.225, C:W.232
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.71: 21 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, I.222, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.65, CLA.67, CLA.69, CLA.70, CLA.73, BCR.78
20 PLIP interactions:19 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.143, C:L.150, C:I.222, C:F.246, C:F.246, C:W.248, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:Y.256, C:A.260, C:L.261
- Hydrogen bonds: C:H.146
- Salt bridges: C:H.146
- Metal complexes: H2O.17
CLA.72: 23 residues within 4Å:- Chain C: W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Chain J: V.21
- Ligands: CLA.68, CLA.73, CLA.74, CLA.75, DGD.80, DGD.81, LMG.82, LHG.111
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain J,- Hydrophobic interactions: C:L.258, C:F.419, C:W.425, J:V.21
- Hydrogen bonds: C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.73: 27 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, M.139, I.142, H.146, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.66, CLA.67, CLA.71, CLA.72, CLA.74, CLA.75, CLA.76
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:I.25, C:L.31, C:A.34, C:H.38, C:Y.131, C:W.133, C:W.133, C:I.142, C:L.150, C:Y.253
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.74: 17 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, V.21, L.24
- Ligands: CLA.66, CLA.67, CLA.68, CLA.72, CLA.73, CLA.75
10 PLIP interactions:3 interactions with chain J, 7 interactions with chain C,- Hydrophobic interactions: J:P.20, J:V.21, J:L.24, C:L.41, C:W.45, C:L.261, C:F.418, C:F.419
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.75: 34 residues within 4Å:- Chain C: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, L.41, F.109, A.115, I.116
- Chain J: F.23, L.24, A.27, F.28, W.30, Q.31
- Chain Q: I.18, I.19, L.22, N.28, L.29
- Chain S: M.19, V.20, V.23, P.24, A.28
- Ligands: CLA.72, CLA.73, CLA.74, BCR.140, LMT.175
22 PLIP interactions:3 interactions with chain Q, 8 interactions with chain J, 7 interactions with chain C, 4 interactions with chain S,- Hydrophobic interactions: Q:I.18, Q:I.19, Q:L.29, J:F.23, J:F.23, J:L.24, J:A.27, J:F.28, J:W.30, C:L.24, C:L.41, C:F.109, C:A.115, C:I.116, S:V.20, S:V.23, S:P.24, S:A.28
- pi-Stacking: J:W.30, J:W.30
- Hydrogen bonds: C:R.23
- Salt bridges: C:R.8
CLA.76: 18 residues within 4Å:- Chain C: L.32, H.35, A.39, L.107, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, G.153
- Ligands: CLA.66, CLA.67, CLA.73, CLA.77, BCR.141
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:L.32, C:H.35, C:Y.131, C:I.142, C:I.142, C:F.145, C:F.145, C:I.148, C:V.149
- Metal complexes: C:H.146
CLA.77: 17 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.76, LMG.83, UNL.87, HTG.100, BCR.141, LMT.175
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.106, C:L.107, C:Y.113, C:L.122, C:Y.125, C:F.129, C:F.129, C:F.129
- Hydrogen bonds: C:Y.113
- Water bridges: C:S.126
- Salt bridges: C:H.114
- Metal complexes: C:H.114
CLA.103: 31 residues within 4Å:- Chain A: M.173, F.196
- Chain D: L.35, W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.4, CLA.5, CLA.6, PL9.10, PHO.104, LMG.112
20 PLIP interactions:19 interactions with chain D, 1 interactions with chain A,- Hydrophobic interactions: D:L.35, D:W.38, D:L.112, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:W.181, D:T.182, D:V.191, D:V.191, D:V.194, D:V.194, D:L.195, D:L.195, D:L.269, A:F.196
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.105: 25 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Chain G: L.38, L.42
- Chain R: F.10, G.12, L.13, G.16, V.19
- Ligands: CLA.30, BCR.106, UNL.174
15 PLIP interactions:4 interactions with chain R, 10 interactions with chain D, 1 interactions with chain G,- Hydrophobic interactions: R:F.10, R:L.13, R:V.19, R:V.19, D:L.26, D:P.29, D:L.33, D:W.83, D:W.83, D:L.106, G:L.38
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
- 2 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.7: 28 residues within 4Å:- Chain A: L.31, A.34, T.35, F.38, I.105, F.109, Y.116, Q.120, A.136, Y.137, A.139, P.140, F.148, M.162, G.165, P.269, V.273
- Chain D: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.4, CLA.5, UNL.21, LHG.110
16 PLIP interactions:14 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.31, A:A.34, A:F.38, A:I.105, A:F.109, A:A.136, A:Y.137, A:Y.137, A:A.139, A:P.140, A:F.148, A:V.273, D:L.195, D:A.202
- Hydrogen bonds: A:Y.116, A:Q.120
PHO.104: 33 residues within 4Å:- Chain A: F.196, A.199, L.200, M.204, F.245, L.248, I.249
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.108, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, A.138, P.139, F.143, F.163, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.6, PL9.10, CLA.103
25 PLIP interactions:23 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.31, D:A.34, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:F.136, D:A.138, D:P.139, D:F.143, D:F.163, D:V.165, D:P.265, D:L.269, A:F.196, A:L.200
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136, D:F.136
- 10 x BCR: BETA-CAROTENE(Non-covalent)
BCR.9: 18 residues within 4Å:- Chain A: F.7, V.25, L.32, A.33, I.36, I.40, A.41, A.45, I.86, W.95, L.96
- Chain H: F.15, L.18
- Ligands: CLA.8, UNL.14, DMS.16, UNL.21, HTG.147
13 PLIP interactions:11 interactions with chain A, 2 interactions with chain H- Hydrophobic interactions: A:F.7, A:L.32, A:L.32, A:A.33, A:I.36, A:I.40, A:A.41, A:I.86, A:W.95, A:W.95, A:L.96, H:F.15, H:L.18
BCR.39: 12 residues within 4Å:- Chain B: M.24, L.28, W.114
- Chain L: I.9, A.10, L.13
- Ligands: CLA.29, CLA.35, CLA.36, BCR.40, LMG.43, UNL.64
7 PLIP interactions:3 interactions with chain L, 4 interactions with chain B- Hydrophobic interactions: L:I.9, L:A.10, L:L.13, B:L.28, B:L.28, B:W.114, B:W.114
BCR.40: 15 residues within 4Å:- Chain B: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104, L.108
- Ligands: CLA.29, CLA.33, CLA.35, BCR.39, LMG.43, UNL.64
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.28, B:W.32, B:I.100, B:L.108
BCR.41: 10 residues within 4Å:- Chain B: L.105, L.108, A.109, C.111, W.112, Y.116
- Ligands: CLA.28, CLA.37, CLA.38, UNL.48
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.105, B:L.108, B:W.112, B:Y.116
BCR.78: 19 residues within 4Å:- Chain C: I.191, F.192, Y.194, L.195, I.206, V.209, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.65, CLA.69, CLA.70, CLA.71
11 PLIP interactions:9 interactions with chain C, 2 interactions with chain H- Hydrophobic interactions: C:F.192, C:Y.194, C:Y.194, C:L.195, C:I.206, C:V.209, C:I.222, C:I.222, C:F.246, H:F.23, H:L.24
BCR.106: 17 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, F.103
- Chain F: P.18, T.19, F.22, L.23, I.26
- Chain I: V.21, V.25
- Ligands: CLA.105, LMG.112
15 PLIP interactions:8 interactions with chain D, 5 interactions with chain F, 2 interactions with chain I- Hydrophobic interactions: D:Y.32, D:L.33, D:L.39, D:L.39, D:L.39, D:F.91, D:F.103, D:F.103, F:P.18, F:T.19, F:F.22, F:L.23, F:I.26, I:V.21, I:V.25
BCR.140: 18 residues within 4Å:- Chain C: A.37, G.40, L.41, F.44, L.51, L.101, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.23, L.26, W.30
- Chain S: L.9, S.16
- Ligands: CLA.75, BCR.173
14 PLIP interactions:7 interactions with chain C, 6 interactions with chain J, 1 interactions with chain S- Hydrophobic interactions: C:A.37, C:L.41, C:F.44, C:L.51, C:L.101, C:A.105, C:A.115, J:Y.6, J:Y.6, J:F.23, J:F.23, J:L.26, J:W.30, S:L.9
BCR.141: 17 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Chain J: Y.6
- Chain S: V.51, G.55, N.58, F.59
- Ligands: CLA.76, CLA.77, LMG.83, UNL.87, HTG.100
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain S- Hydrophobic interactions: C:F.94, C:V.98, C:I.102, C:V.106, C:L.107, C:F.129, S:N.58, S:F.59
BCR.158: 12 residues within 4Å:- Chain A: L.18
- Chain N: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21
- Ligands: UNL.21, LHG.110, LMT.159
8 PLIP interactions:7 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: N:I.4, N:F.8, N:I.14, N:A.15, N:F.18, N:F.18, N:I.21, A:L.18
BCR.173: 21 residues within 4Å:- Chain C: F.44
- Chain I: A.14, T.15, G.18, M.19
- Chain J: L.12, I.19, L.22, F.23, A.25, F.28, V.29
- Chain Q: I.11, G.12, G.15, P.16
- Chain S: V.13, S.16, F.17
- Ligands: UNL.88, BCR.140
10 PLIP interactions:7 interactions with chain J, 1 interactions with chain S, 1 interactions with chain Q, 1 interactions with chain C- Hydrophobic interactions: J:L.12, J:I.19, J:I.19, J:L.22, J:F.23, J:A.25, J:V.29, S:F.17, Q:I.11, C:F.44
- 2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.10: 29 residues within 4Å:- Chain A: F.201, M.204, H.205, L.208, A.241, H.242, F.245, I.249, A.253, S.254, F.255, L.261, F.264
- Chain D: V.20, G.24, F.28, P.29, A.31, Y.32, L.35
- Chain F: V.7, A.11, T.14, L.15
- Chain R: T.23
- Ligands: CLA.6, CLA.103, PHO.104, LHG.121
22 PLIP interactions:13 interactions with chain A, 5 interactions with chain D, 3 interactions with chain F, 1 interactions with chain R- Hydrophobic interactions: A:F.201, A:H.205, A:L.208, A:L.208, A:L.208, A:H.242, A:I.249, A:F.255, A:L.261, A:L.261, A:F.264, A:F.264, D:V.20, D:P.29, D:A.31, D:Y.32, D:L.35, F:V.7, F:A.11, F:L.15, R:T.23
- Hydrogen bonds: A:F.255
PL9.107: 31 residues within 4Å:- Chain A: F.42, I.43, I.67, I.166
- Chain D: M.188, M.189, A.192, G.193, L.199, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.22, V.25, L.28
- Chain N: F.10
- Ligands: CLA.5, CLA.29, LHG.42, LHG.110
25 PLIP interactions:14 interactions with chain D, 5 interactions with chain A, 3 interactions with chain K, 3 interactions with chain N- Hydrophobic interactions: D:M.188, D:M.189, D:A.192, D:L.199, D:T.207, D:W.243, D:F.251, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, A:F.42, A:F.42, A:I.43, A:I.67, A:I.166, K:L.22, K:V.25, K:L.28, N:F.10, N:F.10, N:F.10
- Hydrogen bonds: D:F.251
- 5 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.11: 21 residues within 4Å:- Chain A: F.83, W.87, E.88, F.107, L.110, F.145
- Chain C: L.195, L.196, K.197, S.198, P.199, F.200, E.203, W.205, F.266, L.420
- Chain H: K.5, Y.9
- Ligands: CLA.8, CLA.69, DGD.79
16 PLIP interactions:2 interactions with chain H, 7 interactions with chain A, 7 interactions with chain C- Hydrogen bonds: H:K.5, H:Y.9, A:W.87, A:E.88, A:E.88, C:E.203
- Hydrophobic interactions: A:F.83, A:F.107, A:L.110, A:F.145, C:F.200, C:W.205, C:F.266, C:F.266, C:L.420
- Water bridges: C:S.198
LMG.43: 19 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, F.452, A.453, F.457
- Chain D: I.274
- Chain K: F.34
- Chain L: N.4, L.6, L.13
- Ligands: CLA.29, CLA.35, CLA.36, BCR.39, BCR.40, LHG.109
16 PLIP interactions:1 interactions with chain D, 2 interactions with chain L, 11 interactions with chain B, 2 interactions with chain K- Hydrophobic interactions: D:I.274, L:L.13, B:F.452, B:A.453, B:F.457, K:F.34, K:F.34
- Hydrogen bonds: L:N.4, B:Y.39, B:T.326, B:T.326
- Water bridges: B:T.326, B:K.331, B:K.331, B:K.331, B:K.331
LMG.82: 10 residues within 4Å:- Chain C: H.56, Q.66
- Chain J: D.14, V.18, V.21
- Chain Q: Q.4
- Ligands: CLA.68, CLA.72, DGD.80, LMT.138
7 PLIP interactions:3 interactions with chain C, 4 interactions with chain J- Water bridges: C:H.56, C:H.56
- Salt bridges: C:H.56
- Hydrophobic interactions: J:V.18, J:V.18, J:V.21, J:V.21
LMG.83: 15 residues within 4Å:- Chain C: V.43, W.79, D.89, F.91, P.92, V.95, V.96, V.99, H.100, S.103
- Chain S: F.59, V.62
- Ligands: CLA.67, CLA.77, BCR.141
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain S- Hydrophobic interactions: C:V.43, C:W.79, C:P.92, C:V.95, C:V.99
- Hydrogen bonds: C:D.89, S:V.62
LMG.112: 19 residues within 4Å:- Chain D: Y.57, G.60, C.61, N.62, F.63
- Chain F: T.19, I.26, M.29, Q.30
- Chain I: F.28, G.31, A.32, L.36
- Ligands: CLA.6, DGD.81, CLA.103, BCR.106, UNL.122, MG.137
12 PLIP interactions:4 interactions with chain I, 5 interactions with chain D, 3 interactions with chain F- Hydrogen bonds: I:G.31, D:F.63, F:M.29, F:Q.30
- Water bridges: I:F.28, I:L.36, I:G.37, D:N.62
- Hydrophobic interactions: D:F.63, D:F.63, D:F.63, F:T.19
- 27 x UNL: UNKNOWN LIGAND(Non-functional Binders)
UNL.12: 2 residues within 4Å:- Ligands: LMT.15, UNL.160
Ligand excluded by PLIPUNL.13: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPUNL.14: 6 residues within 4Å:- Chain A: R.6, F.7, W.10
- Ligands: BCR.9, UNL.133, UNL.134
Ligand excluded by PLIPUNL.20: 14 residues within 4Å:- Chain A: L.190, G.194, F.255, S.260, F.263, A.267, W.268, V.271, G.272
- Chain C: W.18
- Chain D: F.222
- Chain J: A.25
- Ligands: UNL.88, LHG.111
Ligand excluded by PLIPUNL.21: 11 residues within 4Å:- Chain A: R.17, L.18, V.20, I.28, L.31, L.32
- Chain N: F.22
- Ligands: CLA.5, PHO.7, BCR.9, BCR.158
Ligand excluded by PLIPUNL.46: 3 residues within 4Å:- Chain B: F.214
- Chain G: T.26, L.29
Ligand excluded by PLIPUNL.47: 12 residues within 4Å:- Chain B: A.227, R.229
- Chain D: F.5, K.13, W.22, R.124, L.125
- Chain G: L.38
- Ligands: CLA.30, CLA.31, LMT.44, UNL.114
Ligand excluded by PLIPUNL.48: 5 residues within 4Å:- Chain B: W.90
- Ligands: CLA.27, CLA.28, BCR.41, HTG.50
Ligand excluded by PLIPUNL.51: 2 residues within 4Å:- Chain B: F.155, F.161
Ligand excluded by PLIPUNL.64: 6 residues within 4Å:- Chain B: L.28, S.103, W.114
- Ligands: CLA.36, BCR.39, BCR.40
Ligand excluded by PLIPUNL.87: 3 residues within 4Å:- Chain C: F.129
- Ligands: CLA.77, BCR.141
Ligand excluded by PLIPUNL.88: 4 residues within 4Å:- Chain C: W.17
- Chain J: F.36
- Ligands: UNL.20, BCR.173
Ligand excluded by PLIPUNL.114: 5 residues within 4Å:- Chain D: W.22, S.23, E.121
- Chain R: L.20
- Ligands: UNL.47
Ligand excluded by PLIPUNL.122: 6 residues within 4Å:- Chain E: F.7
- Chain F: V.12, L.15
- Ligands: LMG.112, LHG.121, HEM.125
Ligand excluded by PLIPUNL.123: 4 residues within 4Å:- Chain E: F.28, I.29, W.32
- Ligands: LMT.126
Ligand excluded by PLIPUNL.130: 2 residues within 4Å:- Chain G: I.9, L.13
Ligand excluded by PLIPUNL.131: 1 residues within 4Å:- Ligands: CLA.23
Ligand excluded by PLIPUNL.132: 5 residues within 4Å:- Chain H: T.3, T.7, I.10, F.14
- Ligands: UNL.133
Ligand excluded by PLIPUNL.133: 5 residues within 4Å:- Chain H: T.7, V.11
- Ligands: UNL.14, UNL.132, UNL.135
Ligand excluded by PLIPUNL.134: 4 residues within 4Å:- Chain A: A.90
- Chain H: M.1, L.4
- Ligands: UNL.14
Ligand excluded by PLIPUNL.135: 5 residues within 4Å:- Chain H: M.1, T.3, L.4, T.7
- Ligands: UNL.133
Ligand excluded by PLIPUNL.139: 1 residues within 4Å:- Chain I: Y.30
Ligand excluded by PLIPUNL.142: 2 residues within 4Å:- Chain J: G.35, F.36
Ligand excluded by PLIPUNL.160: 4 residues within 4Å:- Chain A: L.32
- Chain N: V.7, A.11
- Ligands: UNL.12
Ligand excluded by PLIPUNL.161: 8 residues within 4Å:- Chain O: N.21, P.47, Y.48, E.49, V.77, T.78, E.79
- Ligands: HTG.163
Ligand excluded by PLIPUNL.174: 6 residues within 4Å:- Chain D: W.83, G.89
- Chain R: S.15, G.16
- Ligands: CLA.105, DGD.108
Ligand excluded by PLIPUNL.176: 1 residues within 4Å:- Chain S: F.59
Ligand excluded by PLIP- 9 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.15: 13 residues within 4Å:- Chain A: I.40, I.43, S.58, L.62, Y.63, G.64
- Chain D: R.294, F.301
- Chain M: G.109, G.110
- Ligands: UNL.12, HTG.147, LMT.159
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:I.40, A:I.43, A:L.62
- Hydrogen bonds: A:S.58, A:L.62, A:Y.63, D:R.294, D:R.294
- Water bridges: A:L.62, A:G.64
LMT.44: 14 residues within 4Å:- Chain B: R.223, L.224, A.227, K.497, G.499, D.500
- Chain D: R.2, F.5, D.6, D.9
- Chain G: W.24, M.34
- Chain R: R.38
- Ligands: UNL.47
12 PLIP interactions:7 interactions with chain B, 1 interactions with chain G, 3 interactions with chain D, 1 interactions with chain R- Hydrophobic interactions: B:L.224, B:A.227, G:W.24
- Hydrogen bonds: B:K.497, B:G.499, B:D.500, D:R.2, D:D.9, D:D.10, R:R.38
- Salt bridges: B:R.223, B:K.497
LMT.84: 11 residues within 4Å:- Chain A: W.4, E.5
- Chain C: W.241, R.244
- Chain H: F.21, L.24, S.25, G.26, R.30
- Ligands: CLA.8, CLA.70
8 PLIP interactions:4 interactions with chain C, 1 interactions with chain A, 3 interactions with chain H- Hydrophobic interactions: C:W.241, C:W.241, H:F.21, H:L.24
- Hydrogen bonds: C:R.244, C:R.244, A:W.4, H:R.30
LMT.126: 4 residues within 4Å:- Chain E: W.32, S.36
- Chain F: A.28
- Ligands: UNL.123
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:W.32
LMT.138: 5 residues within 4Å:- Chain I: G.26, Y.30, Y.33
- Ligands: DGD.80, LMG.82
2 PLIP interactions:2 interactions with chain I- Hydrophobic interactions: I:Y.33
- Hydrogen bonds: I:Y.30
LMT.144: 7 residues within 4Å:- Chain L: V.20, V.27, E.30, S.31, Q.32, Q.33
- Ligands: LMT.145
4 PLIP interactions:4 interactions with chain L- Hydrophobic interactions: L:V.20, L:V.27
- Hydrogen bonds: L:E.30, L:Q.32
LMT.145: 8 residues within 4Å:- Chain K: R.13, Y.17
- Chain L: Y.26, E.30
- Chain N: C.12, F.19, F.23
- Ligands: LMT.144
7 PLIP interactions:4 interactions with chain K, 2 interactions with chain L, 1 interactions with chain N- Hydrophobic interactions: K:Y.17, N:F.19
- Hydrogen bonds: K:R.13, K:R.13, L:Y.26, L:E.30
- Salt bridges: K:R.13
LMT.159: 7 residues within 4Å:- Chain A: L.62
- Chain L: M.1
- Chain N: M.1, I.4, F.8
- Ligands: LMT.15, BCR.158
No protein-ligand interaction detected (PLIP)LMT.175: 16 residues within 4Å:- Chain C: A.105, F.109, Y.113, R.117
- Chain S: M.19, Y.27, W.33, K.37, I.40, F.41, S.44, W.47, I.48
- Ligands: CLA.75, CLA.77, HTG.100
10 PLIP interactions:6 interactions with chain S, 4 interactions with chain C- Hydrophobic interactions: S:M.19, S:W.47, S:W.47, S:I.48, C:A.105, C:F.109, C:F.109
- Water bridges: S:K.37
- Salt bridges: S:K.37
- Hydrogen bonds: C:R.117
- 48 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.16: 5 residues within 4Å:- Chain A: L.92, D.93, L.96
- Ligands: BCR.9, HTG.147
Ligand excluded by PLIPDMS.17: 4 residues within 4Å:- Chain A: P.47, P.56
- Chain D: E.300
- Chain M: R.112
Ligand excluded by PLIPDMS.18: 7 residues within 4Å:- Chain A: N.305
- Chain D: H.51, G.52, L.53, Q.322, P.325
- Chain E: I.60
Ligand excluded by PLIPDMS.19: 2 residues within 4Å:- Chain A: E.88
- Ligands: DMS.136
Ligand excluded by PLIPDMS.52: 6 residues within 4Å:- Chain B: W.274, D.275, S.277, R.357, M.358, P.359
Ligand excluded by PLIPDMS.53: 6 residues within 4Å:- Chain B: R.384, A.385, E.386, S.387
- Chain O: L.10, Y.14
Ligand excluded by PLIPDMS.54: 4 residues within 4Å:- Chain B: V.376, Y.389
- Chain D: V.330
- Ligands: DMS.115
Ligand excluded by PLIPDMS.55: 4 residues within 4Å:- Chain B: S.302, A.303, I.304, P.305
Ligand excluded by PLIPDMS.56: 4 residues within 4Å:- Chain B: L.41, A.42, T.43, F.44
Ligand excluded by PLIPDMS.57: 5 residues within 4Å:- Chain B: K.331, N.437
- Chain D: I.293
- Chain L: E.2, V.3
Ligand excluded by PLIPDMS.58: 6 residues within 4Å:- Chain B: I.12, N.13, P.130, A.131, L.132, I.233
Ligand excluded by PLIPDMS.59: 6 residues within 4Å:- Chain B: V.115, Y.116, W.117, D.118
- Chain G: R.2
- Chain K: E.1
Ligand excluded by PLIPDMS.60: 5 residues within 4Å:- Chain B: N.347, K.348, E.349, Q.393, Q.394
Ligand excluded by PLIPDMS.61: 2 residues within 4Å:- Chain B: Q.408, T.409
Ligand excluded by PLIPDMS.62: 3 residues within 4Å:- Chain B: W.74, S.75
- Ligands: HTG.49
Ligand excluded by PLIPDMS.89: 4 residues within 4Å:- Chain C: W.171, N.210, R.344
- Chain M: D.5
Ligand excluded by PLIPDMS.90: 3 residues within 4Å:- Chain C: E.376
- Chain P: F.101
- Ligands: DMS.92
Ligand excluded by PLIPDMS.91: 4 residues within 4Å:- Chain C: G.174, G.175, W.369, R.373
Ligand excluded by PLIPDMS.92: 4 residues within 4Å:- Chain C: Y.64, G.84, G.85
- Ligands: DMS.90
Ligand excluded by PLIPDMS.93: 3 residues within 4Å:- Chain C: V.87, V.88, T.90
Ligand excluded by PLIPDMS.94: 4 residues within 4Å:- Chain C: G.202, D.342, R.344
- Chain M: Y.4
Ligand excluded by PLIPDMS.95: 5 residues within 4Å:- Chain C: P.83, G.84, E.86
- Chain P: P.102, R.105
Ligand excluded by PLIPDMS.96: 6 residues within 4Å:- Chain C: K.305
- Chain P: Q.86, E.87, I.88, E.90, V.91
Ligand excluded by PLIPDMS.98: 4 residues within 4Å:- Chain C: W.171, P.346, E.349, P.350
Ligand excluded by PLIPDMS.115: 4 residues within 4Å:- Chain D: F.331
- Chain P: V.135, Y.136
- Ligands: DMS.54
Ligand excluded by PLIPDMS.116: 6 residues within 4Å:- Chain B: W.467, F.474, F.478
- Chain D: P.130, Y.131, I.134
Ligand excluded by PLIPDMS.118: 8 residues within 4Å:- Chain B: R.356, I.368, T.370, V.376
- Chain D: N.328, F.329, V.330, F.331
Ligand excluded by PLIPDMS.119: 3 residues within 4Å:- Chain C: E.11, G.14
- Chain D: E.217
Ligand excluded by PLIPDMS.120: 4 residues within 4Å:- Chain C: R.443
- Chain D: D.215, Q.229, E.231
Ligand excluded by PLIPDMS.124: 2 residues within 4Å:- Chain E: F.67
- Chain G: I.53
Ligand excluded by PLIPDMS.136: 5 residues within 4Å:- Chain A: W.87, E.88
- Chain H: E.2, K.5
- Ligands: DMS.19
Ligand excluded by PLIPDMS.148: 5 residues within 4Å:- Chain M: Q.193, I.194, S.195, E.213, E.215
Ligand excluded by PLIPDMS.149: 1 residues within 4Å:- Chain M: D.21
Ligand excluded by PLIPDMS.150: 4 residues within 4Å:- Chain M: T.45, F.47, L.67, E.71
Ligand excluded by PLIPDMS.151: 7 residues within 4Å:- Chain M: V.49, K.50, E.51, E.52, M.107, E.111, H.228
Ligand excluded by PLIPDMS.152: 5 residues within 4Å:- Chain M: N.121, V.123, E.142, N.144, K.191
Ligand excluded by PLIPDMS.153: 3 residues within 4Å:- Chain M: F.187, S.188, L.189
Ligand excluded by PLIPDMS.154: 2 residues within 4Å:- Chain M: T.45, G.234
Ligand excluded by PLIPDMS.155: 5 residues within 4Å:- Chain M: Q.127, V.130, S.132, T.134, T.137
Ligand excluded by PLIPDMS.156: 1 residues within 4Å:- Chain M: A.108
Ligand excluded by PLIPDMS.157: 4 residues within 4Å:- Chain M: S.125, Q.127, D.138, K.140
Ligand excluded by PLIPDMS.162: 3 residues within 4Å:- Chain O: V.43, A.46, R.90
Ligand excluded by PLIPDMS.166: 5 residues within 4Å:- Chain P: P.11, N.13, S.14, D.67, N.68
Ligand excluded by PLIPDMS.167: 4 residues within 4Å:- Chain F: R.34
- Chain P: L.3, E.23, L.27
Ligand excluded by PLIPDMS.168: 3 residues within 4Å:- Chain P: L.3, T.4, P.5
Ligand excluded by PLIPDMS.169: 3 residues within 4Å:- Chain E: R.58
- Chain P: G.127, D.128
Ligand excluded by PLIPDMS.170: 3 residues within 4Å:- Chain P: R.55, D.128, Y.136
Ligand excluded by PLIPDMS.171: 6 residues within 4Å:- Chain P: R.31, L.32, Y.35, N.106, L.107, D.111
Ligand excluded by PLIP- 3 x CA: CALCIUM ION(Non-covalent)
CA.22: 2 residues within 4Å:- Chain B: E.434, N.437
No protein-ligand interaction detected (PLIP)CA.146: 3 residues within 4Å:- Chain M: T.135, N.197, V.198
5 PLIP interactions:2 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: M:T.135, M:V.198, H2O.36, H2O.37, H2O.38
CA.172: 1 residues within 4Å:- Chain P: E.2
5 PLIP interactions:1 interactions with chain P, 4 Ligand-Water interactions- Metal complexes: P:E.2, H2O.1, H2O.30, H2O.45, H2O.46
- 6 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.42: 22 residues within 4Å:- Chain A: S.222, N.224
- Chain B: P.3, W.4, Y.5
- Chain D: W.256, F.260, F.263
- Chain K: E.10, L.11, N.12, S.15, L.18, G.19, L.21
- Chain L: P.18, F.21
- Ligands: CLA.5, CLA.33, PL9.107, LHG.109, LHG.110
14 PLIP interactions:4 interactions with chain K, 2 interactions with chain B, 3 interactions with chain A, 2 interactions with chain L, 3 interactions with chain D- Hydrophobic interactions: K:L.21, L:P.18, L:F.21, D:W.256, D:F.263, D:F.263
- Hydrogen bonds: K:E.10, K:N.12, K:S.15, B:W.4, B:Y.5, A:S.222, A:S.222, A:N.224
LHG.109: 25 residues within 4Å:- Chain A: S.222, N.224
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467, F.478
- Chain D: Y.131, I.134, W.256, F.259, L.262, V.266, T.267, W.270, M.271
- Chain K: L.22
- Chain L: P.18
- Ligands: CLA.29, CLA.33, CLA.35, LHG.42, LMG.43
14 PLIP interactions:7 interactions with chain B, 4 interactions with chain D, 2 interactions with chain A, 1 interactions with chain L- Hydrophobic interactions: B:W.4, B:W.4, B:Y.5, B:L.460, B:F.463, D:L.262, D:V.266, D:W.270, L:P.18
- Water bridges: B:R.6
- Salt bridges: B:R.6
- Hydrogen bonds: D:Y.131, A:S.222, A:N.224
LHG.110: 26 residues within 4Å:- Chain A: M.27, R.119
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.12, T.14, S.15, Y.17, L.18, L.21
- Chain N: F.17, A.20, I.21
- Ligands: CLA.4, CLA.5, PHO.7, LHG.42, PL9.107, BCR.158
18 PLIP interactions:6 interactions with chain K, 5 interactions with chain N, 7 interactions with chain D- Hydrophobic interactions: K:L.21, N:F.17, N:F.17, N:F.17, N:A.20, N:I.21, D:I.249, D:F.251, D:F.251, D:F.260
- Hydrogen bonds: K:N.12, K:S.15, D:S.252, D:S.252, D:N.253
- Water bridges: K:T.14, K:T.14, K:T.14
LHG.111: 19 residues within 4Å:- Chain A: R.130, W.132, F.263, A.266
- Chain C: F.15, W.18, A.19, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: UNL.20, CLA.68, CLA.72, DGD.81
12 PLIP interactions:4 interactions with chain C, 5 interactions with chain D, 3 interactions with chain A- Hydrophobic interactions: C:W.18, C:W.18, A:F.263
- Hydrogen bonds: C:R.429, C:R.429, D:N.210, D:A.219, D:S.220, D:T.221
- Water bridges: D:T.221, A:R.130
- Salt bridges: A:R.130
LHG.121: 20 residues within 4Å:- Chain A: L.248, I.249, F.250, Y.252, A.253
- Chain D: F.17, V.18, L.27, F.28, R.118
- Chain E: E.4, R.5, P.6, F.7, S.8
- Chain F: R.8, V.12
- Ligands: CLA.6, PL9.10, UNL.122
12 PLIP interactions:3 interactions with chain D, 5 interactions with chain E, 2 interactions with chain F, 2 interactions with chain A- Hydrophobic interactions: D:V.18, D:L.27, D:F.28, E:F.7, F:V.12, A:F.250, A:Y.252
- Hydrogen bonds: E:E.4, E:F.7, E:S.8, E:S.8, F:R.8
LHG.127: 13 residues within 4Å:- Chain D: R.14, D.15, R.16
- Chain E: T.2, E.4
- Chain F: P.3, F.5, T.6, V.7
- Chain R: T.23, V.26, I.30, D.34
10 PLIP interactions:3 interactions with chain R, 4 interactions with chain F, 2 interactions with chain D, 1 interactions with chain E- Hydrophobic interactions: R:V.26, R:I.30, R:I.30, F:F.5, F:V.7
- Hydrogen bonds: F:V.7, E:T.2
- Water bridges: F:R.8
- Salt bridges: D:R.14, D:R.16
- 12 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.45: 2 residues within 4Å:- Chain B: W.184
- Ligands: CLA.23
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:W.184, B:W.184
HTG.49: 7 residues within 4Å:- Chain B: W.74, D.86, P.87, G.88, F.89
- Ligands: HTG.50, DMS.62
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.74
- Hydrogen bonds: B:D.86, B:G.88, B:G.88
HTG.50: 5 residues within 4Å:- Chain B: F.89, W.90
- Ligands: CLA.28, UNL.48, HTG.49
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.89, B:F.89
- Hydrogen bonds: B:F.89
- Water bridges: B:W.90
HTG.63: 10 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, E.430, F.431, T.433
- Chain M: Q.173, A.174, K.175
7 PLIP interactions:2 interactions with chain M, 5 interactions with chain B- Hydrogen bonds: M:Q.173, M:K.175, B:K.340, B:K.340, B:F.431
- Hydrophobic interactions: B:Y.419
- Water bridges: B:K.422
HTG.85: 5 residues within 4Å:- Chain C: W.79, F.163, F.164, G.165
- Ligands: CLA.66
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:W.79, C:F.163
HTG.86: 6 residues within 4Å:- Chain C: M.162, T.182, N.183, P.184, L.186, I.220
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.220
- Hydrogen bonds: C:N.183, C:N.183
HTG.99: 2 residues within 4Å:- Chain C: L.186, W.221
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:W.221
HTG.100: 4 residues within 4Å:- Chain C: Y.125
- Ligands: CLA.77, BCR.141, LMT.175
No protein-ligand interaction detected (PLIP)HTG.113: 5 residues within 4Å:- Chain D: G.3, W.4, F.5
- Chain G: W.24, T.27
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain G- Hydrogen bonds: D:F.5
- Hydrophobic interactions: G:W.24, G:T.27
HTG.147: 6 residues within 4Å:- Chain A: Y.63
- Chain M: G.109, G.110
- Ligands: BCR.9, LMT.15, DMS.16
1 PLIP interactions:1 interactions with chain M- Water bridges: M:G.109
HTG.163: 9 residues within 4Å:- Chain O: N.45, A.46, P.47, Y.48, E.49, D.53, N.56, I.57
- Ligands: UNL.161
3 PLIP interactions:3 interactions with chain O- Hydrophobic interactions: O:E.49
- Hydrogen bonds: O:N.45, O:N.56
HTG.165: 6 residues within 4Å:- Chain P: A.89, E.90, R.96, S.97, D.99, I.100
2 PLIP interactions:2 interactions with chain P- Hydrogen bonds: P:R.96, P:D.99
- 5 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.79: 32 residues within 4Å:- Chain A: L.81, S.138, L.141, A.142, F.145, I.150, I.153
- Chain C: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, F.417, L.420
- Ligands: CLA.8, LMG.11, CLA.70
20 PLIP interactions:16 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:P.199, C:F.200, C:W.205, C:V.207, C:F.266, C:L.420, A:L.141, A:F.145, A:I.150, A:I.153
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:D.342, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200, C:N.210, C:D.342
DGD.80: 22 residues within 4Å:- Chain A: H.185, F.187, L.287
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411, V.414
- Chain I: F.29, Y.33
- Ligands: CLA.68, CLA.72, DGD.81, LMG.82, LMT.138
17 PLIP interactions:12 interactions with chain C, 3 interactions with chain A, 2 interactions with chain I- Hydrophobic interactions: C:L.386, C:W.407, C:V.414, A:F.187, A:F.187, A:L.287, I:F.29
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402, C:W.407
- Water bridges: C:Y.64, C:Q.66, C:G.67, I:Y.33
DGD.81: 30 residues within 4Å:- Chain A: P.186, Q.189, L.190, A.193, F.290, N.291, F.292, S.295
- Chain C: L.386, N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain D: N.62
- Chain I: F.29, A.32, Y.33, G.37, S.38, S.39
- Chain P: Q.34
- Ligands: CLA.6, CLA.68, CLA.72, DGD.80, LHG.111, LMG.112
18 PLIP interactions:7 interactions with chain C, 5 interactions with chain A, 5 interactions with chain I, 1 interactions with chain P- Hydrogen bonds: C:N.387, C:N.397, C:S.398, C:S.398, C:V.399, A:S.295, I:G.37, I:S.39, P:Q.34
- Water bridges: C:N.397, C:N.400, I:Y.33, I:S.39
- Hydrophobic interactions: A:P.186, A:Q.189, A:L.190, A:A.193, I:F.29
DGD.108: 9 residues within 4Å:- Chain D: G.89, D.90, F.91, T.92
- Chain E: F.34, D.42, V.43, F.44
- Ligands: UNL.174
8 PLIP interactions:4 interactions with chain E, 4 interactions with chain D- Hydrophobic interactions: E:F.34, E:F.34, E:V.43, E:F.44
- Hydrogen bonds: D:F.91, D:T.92, D:T.92, D:T.92
DGD.128: 27 residues within 4Å:- Chain B: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, T.451, A.455, F.462
- Chain D: G.76, H.77, I.113, V.144, I.149, L.152, G.153, S.155, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.24, CLA.30
25 PLIP interactions:7 interactions with chain D, 8 interactions with chain G, 10 interactions with chain B- Hydrophobic interactions: D:I.113, D:V.144, D:I.149, D:L.152, D:L.281, G:Y.48, G:Y.48, G:Y.48, B:F.249, B:F.249, B:Y.257, B:T.451, B:A.455, B:F.462, B:F.462
- Hydrogen bonds: D:H.77, D:S.155, G:N.49, G:V.59, G:S.60, G:W.61, B:Y.192, B:Y.192, B:S.276
- Water bridges: G:S.50
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.97: 10 residues within 4Å:- Chain A: L.331, L.333
- Chain C: M.378, T.379, H.380, A.381, L.383, G.391, V.392
- Chain P: K.47
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain P- Hydrogen bonds: C:T.379, C:A.381, P:K.47, P:K.47
- Water bridges: C:L.383
GOL.117: 7 residues within 4Å:- Chain D: I.293, E.297
- Chain M: L.171, A.174, K.175, E.178, L.179
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain D- Hydrogen bonds: M:K.175, D:I.293
- 1 x FE2: FE (II) ION(Non-covalent)
FE2.101: 5 residues within 4Å:- Chain A: H.205, H.262
- Chain D: H.204, H.258
- Ligands: BCT.102
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain A- Metal complexes: D:H.204, D:H.258, A:H.205, A:H.262
- 1 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.102: 10 residues within 4Å:- Chain A: H.205, V.209, E.234, Y.236, S.258, H.262
- Chain D: H.204, Y.234, H.258
- Ligands: FE2.101
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.236
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.125: 16 residues within 4Å:- Chain E: F.7, I.10, R.15, Y.16, H.20, T.23, I.24, L.27
- Chain F: I.4, R.8, W.9, V.12, H.13, A.16, I.20
- Ligands: UNL.122
19 PLIP interactions:10 interactions with chain E, 9 interactions with chain F,- Hydrophobic interactions: E:F.7, E:I.10, E:T.23, E:I.24, E:I.24, E:L.27, F:I.4, F:W.9, F:V.12, F:A.16
- Salt bridges: E:R.5, E:R.15, F:R.8
- pi-Stacking: E:Y.16, F:W.9, F:W.9
- Metal complexes: E:H.20, F:H.13
- pi-Cation interactions: F:H.13
- 1 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
RRX.129: 13 residues within 4Å:- Chain G: M.30, F.33, M.34, L.36, F.37, F.40, I.43, L.54
- Chain R: T.1, L.6
- Ligands: CLA.23, CLA.24, CLA.31
7 PLIP interactions:6 interactions with chain G, 1 interactions with chain R- Hydrophobic interactions: G:F.37, G:F.37, G:F.37, G:F.40, G:I.43, G:L.54, R:L.6
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.137: 5 residues within 4Å:- Chain I: G.31, A.34, G.35, L.36
- Ligands: LMG.112
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.31, I:A.34, I:L.36, H2O.30
MG.143: 2 residues within 4Å:- Chain J: D.10, D.14
3 PLIP interactions:1 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: J:D.14, H2O.32, H2O.46
- 1 x HEC: HEME C(Covalent)
HEC.164: 25 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, A.62, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
18 PLIP interactions:18 interactions with chain P,- Hydrophobic interactions: P:A.36, P:T.46, P:N.49, P:L.52, P:L.54, P:L.72, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- Water bridges: P:N.49
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakajima, Y. et al., Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II inThermosynechococcus elongatus. J. Biol. Chem. (2018)
- Release Date
- 2018-08-01
- Peptides
- Photosystem II protein D1 1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center protein Ycf12: Q
Photosystem II reaction center X protein: R
Photosystem II reaction center protein Z: S - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
HH
II
JJ
KK
LL
MM
ON
TO
UP
VQ
YR
XS
Z - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 5zzn.1 (1 other biounit)
Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus
Photosystem II protein D1 1
Photosystem II CP47 reaction center protein
Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I
Photosystem II reaction center protein J
Photosystem II reaction center protein K
Photosystem II reaction center protein L
Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Photosystem II reaction center protein T
Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Photosystem II reaction center protein Ycf12
Photosystem II reaction center X protein
Photosystem II reaction center protein Z
Related Entries With Identical Sequence
1izl.1 | 1mz4.1 | 1s5l.1 | 1s5l.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 | 5b66.1 | 5e79.1 more...less...5e7c.1 | 5gth.1 | 5gth.2 | 5gti.1 | 5gti.2 | 5h2f.1 | 5h2f.2 | 5kaf.1 | 5kai.1 | 5mx2.1 | 5mx2.2 | 5tis.1 | 5v2c.1 | 5ws5.1 | 5ws5.2 | 5ws6.1 | 5ws6.2 | 5zzn.2 | 6dhe.1 | 6dhf.1 | 6dhg.1 | 6dhh.1 | 6dho.1 | 6dhp.1 | 6jlj.1 | 6jlk.1 | 6jll.1 | 6jlm.1 | 6jln.1 | 6jlo.1 | 6jlp.1 | 6w1o.1 | 6w1p.1 | 6w1q.1 | 6w1r.1 | 6w1t.1 | 6w1u.1 | 6w1v.1 | 7cji.1 | 7cjj.1 | 7cou.1 | 7czl.1 | 7d1t.1 | 7d1u.1 | 7dxh.1 | 7eda.1 | 7nho.1 | 7nhp.1 | 7nhq.1 | 7rf1.1 | 7rf2.1 | 7rf3.1 | 7rf4.1 | 7rf5.1 | 7rf6.1 | 7rf7.1 | 7rf8.1 | 7yq2.1 | 7yq7.1 | 8ez5.1 | 8f4c.1 | 8f4d.1 | 8f4e.1 | 8f4f.1 | 8f4g.1 | 8f4h.1 | 8f4i.1 | 8f4j.1 | 8f4k.1 | 8gn0.1 | 8gn1.1 | 8gn2.1 | 8ir5.1 | 8ir6.1 | 8ir7.1 | 8ir8.1 | 8ir9.1 | 8ira.1 | 8irb.1 | 8irc.1 | 8ird.1 | 8ire.1 | 8irf.1 | 8irg.1 | 8irh.1 | 8iri.1 | 9evx.1