SMTL ID : 5zzn.1 (1 other biounit)

Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x OEX: CA-MN4-O5 CLUSTER(Non-covalent)
2 x CL: CHLORIDE ION(Non-functional Binders)
35 x CLA: CHLOROPHYLL A(Non-covalent)
2 x PHO: PHEOPHYTIN A(Non-covalent)
10 x BCR: BETA-CAROTENE(Non-covalent)
2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
5 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
27 x UNL: UNKNOWN LIGAND(Non-functional Binders)
9 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
48 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
3 x CA: CALCIUM ION(Non-covalent)
6 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
12 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
5 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
2 x GOL: GLYCEROL(Non-functional Binders)
1 x FE2: FE (II) ION(Non-covalent)
1 x BCT: BICARBONATE ION(Non-functional Binders)
1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
1 x RRX: (3R)-beta,beta-caroten-3-ol(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
1 x HEC: HEME C(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Nakajima, Y. et al., Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II inThermosynechococcus elongatus. J. Biol. Chem. (2018)
Release Date
2018-08-01
Peptides
Photosystem II protein D1 1: A
Photosystem II CP47 reaction center protein: B
Photosystem II CP43 reaction center protein: C
Photosystem II D2 protein: D
Cytochrome b559 subunit alpha: E
Cytochrome b559 subunit beta: F
Photosystem II reaction center protein H: G
Photosystem II reaction center protein I: H
Photosystem II reaction center protein J: I
Photosystem II reaction center protein K: J
Photosystem II reaction center protein L: K
Photosystem II reaction center protein M: L
Photosystem II manganese-stabilizing polypeptide: M
Photosystem II reaction center protein T: N
Photosystem II 12 kDa extrinsic protein: O
Cytochrome c-550: P
Photosystem II reaction center protein Ycf12: Q
Photosystem II reaction center X protein: R
Photosystem II reaction center protein Z: S
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
H
H
I
I
J
J
K
K
L
L
M
M
O
N
T
O
U
P
V
Q
Y
R
X
S
Z
Membrane
We predict this structure to be a membrane protein.

Photosystem II protein D1 1

Photosystem II CP47 reaction center protein

Photosystem II CP43 reaction center protein

Photosystem II D2 protein

Cytochrome b559 subunit alpha

Cytochrome b559 subunit beta

Photosystem II reaction center protein H

Photosystem II reaction center protein I

Photosystem II reaction center protein J

Photosystem II reaction center protein K

Photosystem II reaction center protein L

Photosystem II reaction center protein M

Photosystem II manganese-stabilizing polypeptide

Photosystem II reaction center protein T

Photosystem II 12 kDa extrinsic protein

Cytochrome c-550

Photosystem II reaction center protein Ycf12

Photosystem II reaction center X protein

Photosystem II reaction center protein Z

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