- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-1-mer
- Ligands
- 2 x FE2: FE (II) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: N.181, H.332, E.333
- Chain D: K.307
Ligand excluded by PLIPCL.3: 5 residues within 4Å:- Chain A: H.337, N.338, F.339
- Chain C: G.335, E.336
Ligand excluded by PLIPCL.110: 4 residues within 4Å:- Chain U: N.181, H.332, E.333
- Chain X: K.307
Ligand excluded by PLIPCL.111: 5 residues within 4Å:- Chain U: H.337, N.338, F.339
- Chain W: G.335, E.336
Ligand excluded by PLIP- 70 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.4: 27 residues within 4Å:- Chain A: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, A.286, A.287, I.290
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.5, CLA.6, PHO.7, CLA.76
16 PLIP interactions:13 interactions with chain A, 2 interactions with chain D, 1 interactions with chain N,- Hydrophobic interactions: A:F.119, A:F.182, A:F.186, A:Q.187, A:I.192, A:I.192, A:L.193, A:V.205, A:F.206, A:F.206, A:I.290, D:L.172, D:L.195, N:F.17
- Water bridges: A:I.290
- Metal complexes: A:H.198
CLA.5: 19 residues within 4Å:- Chain A: V.157, F.158, M.172, I.176, T.179, F.180, M.183
- Chain D: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.4, PHO.7, SQD.11, CLA.76, PL9.79, LHG.80, LHG.97
6 PLIP interactions:4 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.157, A:F.158, A:T.179, A:F.180, D:V.191
- Metal complexes: H2O.4
CLA.6: 20 residues within 4Å:- Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, F.260, W.278
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.4, PHO.15, DGD.66, CLA.76, LMG.86, LHG.87
13 PLIP interactions:6 interactions with chain A, 6 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:V.202, A:F.206, A:L.210, A:F.260, A:W.278, D:F.147, D:F.147, D:I.168, D:F.171, D:L.172, D:L.172
- pi-Stacking: A:F.206
- Metal complexes: H2O.5
CLA.8: 24 residues within 4Å:- Chain A: I.36, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.20
- Ligands: BCR.9, LMG.48, CLA.53, CLA.54, DGD.64
19 PLIP interactions:13 interactions with chain A, 6 interactions with chain H,- Hydrophobic interactions: A:I.36, A:T.40, A:F.93, A:P.95, A:I.96, A:W.97, A:W.97, A:L.114, A:F.117, A:L.121, H:V.11, H:V.12, H:V.12, H:F.15, H:F.15, H:V.20
- Hydrogen bonds: A:I.96
- Salt bridges: A:H.118
- Metal complexes: A:H.118
CLA.17: 8 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, L.54
- Ligands: CLA.18, BCR.91
7 PLIP interactions:3 interactions with chain B, 3 interactions with chain G, 1 Ligand-Water interactions,- Hydrophobic interactions: B:P.186, B:F.189, B:F.189, G:F.40, G:F.40, G:L.54
- Metal complexes: H2O.12
CLA.18: 26 residues within 4Å:- Chain B: G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.245, F.246, F.249, V.250
- Chain D: V.144, L.148
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.17, CLA.19, CLA.21, CLA.24, CLA.25, DGD.92
18 PLIP interactions:4 interactions with chain G, 2 interactions with chain D, 12 interactions with chain B,- Hydrophobic interactions: G:F.37, G:F.40, G:I.44, G:I.44, D:V.144, D:L.148, B:F.189, B:F.189, B:A.199, B:H.200, B:A.204, B:V.207, B:V.207, B:F.245, B:F.246, B:F.249, B:F.249
- Metal complexes: B:H.200
CLA.19: 22 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.251, T.261
- Chain G: M.34, F.37
- Ligands: CLA.18, CLA.20, CLA.21, CLA.22, CLA.25, CLA.26
13 PLIP interactions:1 interactions with chain G, 12 interactions with chain B,- Hydrophobic interactions: G:F.37, B:L.68, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:A.247, B:V.251
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.20: 25 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.144, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.19, CLA.21, CLA.22, CLA.23, CLA.27, CLA.28, CLA.29, CLA.31, UNL.42
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:F.64, B:L.144, B:L.147, B:L.148, B:L.148, B:V.244, B:A.247, B:V.251, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.21: 26 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, A.145, C.149, A.204
- Ligands: CLA.18, CLA.19, CLA.20, CLA.22, CLA.25, CLA.26, CLA.28, CLA.31, BCR.35, UNL.42
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:T.26, B:V.29, B:A.30, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102, B:A.145
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.22: 24 residues within 4Å:- Chain B: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.19, CLA.20, CLA.21, CLA.32, BCR.35, UNL.42, SQD.120
8 PLIP interactions:8 interactions with chain B,- Hydrophobic interactions: B:L.68, B:W.90, B:A.98, B:V.101, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.23: 26 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain D: M.271
- Chain L: F.14
- Ligands: LHG.16, CLA.20, CLA.29, BCR.33, BCR.34, LMG.37, PL9.79, BCR.212
8 PLIP interactions:6 interactions with chain B, 1 interactions with chain L, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Y.39, B:F.324, B:W.449, L:F.14
- Hydrogen bonds: B:Y.39, B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.13
CLA.24: 28 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: L.79, F.110, I.113, M.116, L.117, F.120, I.140
- Chain G: L.38, L.42
- Ligands: CLA.18, CLA.25, CLA.26, CLA.77, UNL.83, DGD.92
18 PLIP interactions:10 interactions with chain B, 7 interactions with chain D, 1 interactions with chain G,- Hydrophobic interactions: B:A.242, B:F.245, B:F.246, B:F.462, B:F.462, B:I.466, B:L.473, D:L.79, D:F.110, D:I.113, D:M.116, D:L.117, D:F.120, D:I.140, G:L.38
- Hydrogen bonds: B:S.238
- Water bridges: B:S.239
- Metal complexes: B:H.465
CLA.25: 26 residues within 4Å:- Chain B: F.138, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain D: F.110
- Chain G: T.26, T.27, M.30, F.33, L.38, L.41, L.42
- Ligands: CLA.18, CLA.19, CLA.21, CLA.24, CLA.26, UNL.83, BCR.91
18 PLIP interactions:10 interactions with chain B, 7 interactions with chain G, 1 interactions with chain D,- Hydrophobic interactions: B:F.138, B:F.138, B:V.207, B:A.211, B:F.214, B:F.214, B:L.224, B:L.228, G:M.30, G:F.33, G:F.33, G:L.38, G:L.41, G:L.42, D:F.110
- Salt bridges: B:H.215
- Metal complexes: B:H.215
- Hydrogen bonds: G:T.26
CLA.26: 22 residues within 4Å:- Chain B: H.22, L.134, M.137, F.138, H.141, L.142, A.145, L.228, M.230, I.233, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.19, CLA.21, CLA.24, CLA.25, CLA.28, CLA.31, BCR.91
10 PLIP interactions:9 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:F.138, B:L.228, B:M.230, B:I.233, B:T.235, B:A.243
- Metal complexes: H2O.7
CLA.27: 24 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471, F.478
- Chain L: F.21
- Ligands: LHG.16, CLA.20, CLA.28, CLA.29, CLA.30, LHG.97
15 PLIP interactions:14 interactions with chain B, 1 interactions with chain L,- Hydrophobic interactions: B:W.4, B:W.4, B:H.8, B:L.237, B:L.237, B:I.241, B:F.457, B:F.461, B:F.463, L:F.21
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.28: 19 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, V.244
- Ligands: CLA.20, CLA.21, CLA.26, CLA.27, CLA.29, CLA.30, CLA.31
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:L.11, B:I.12, B:L.18, B:H.22, B:H.25, B:T.26, B:I.233, B:I.233, B:V.236, B:L.237, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.29: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: LHG.16, CLA.20, CLA.23, CLA.27, CLA.28, CLA.30, BCR.33, BCR.34, LMG.37
7 PLIP interactions:7 interactions with chain B,- Hydrophobic interactions: B:V.29, B:W.32, B:W.32, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.30: 24 residues within 4Å:- Chain 7: F.8
- Chain B: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.8, V.10
- Chain L: F.21, L.25
- Ligands: CLA.27, CLA.28, CLA.29, BCR.33, SQD.36, LMG.37, LHG.97, UNL.207, LMT.208, BCR.212
9 PLIP interactions:6 interactions with chain B, 2 interactions with chain L, 1 interactions with chain 7,- Hydrophobic interactions: B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:F.21, L:L.25, 7:F.8
- Metal complexes: B:H.8
CLA.31: 18 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.13, N.14
- Ligands: CLA.20, CLA.21, CLA.26, CLA.28, CLA.32, BCR.35
8 PLIP interactions:3 interactions with chain G, 5 interactions with chain B,- Hydrophobic interactions: G:L.6, G:L.13, G:L.13, B:I.19, B:L.132, B:L.144
- Hydrogen bonds: B:H.22
- Metal complexes: B:H.141
CLA.32: 14 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119
- Chain G: T.4, L.6, G.7, L.10
- Ligands: CLA.22, CLA.31, BCR.35, UNL.42
12 PLIP interactions:8 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.23, B:W.112, B:W.112, B:L.119, G:L.6, G:L.10
- pi-Stacking: B:W.112, B:W.112
- Metal complexes: B:H.113
- Hydrogen bonds: G:T.4
- Water bridges: G:L.6
CLA.49: 22 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, I.267, A.268, F.271, V.278, Y.279
- Ligands: CLA.50, CLA.51, CLA.54, CLA.55, BCR.63
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:A.154, C:L.157, C:I.206, C:I.222, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278
- Metal complexes: C:H.219
CLA.50: 25 residues within 4Å:- Chain C: W.45, I.69, L.70, H.73, L.77, L.156, K.160, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.49, CLA.51, CLA.52, CLA.58, CLA.60, LMG.67, HTG.69
17 PLIP interactions:17 interactions with chain C,- Hydrophobic interactions: C:W.45, C:I.69, C:L.70, C:L.77, C:L.156, C:K.160, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.51: 18 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100
- Ligands: CLA.49, CLA.50, CLA.55, CLA.57, CLA.58, CLA.60, CLA.61, LMG.68
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:V.96
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.52: 19 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.50, CLA.56, CLA.58, DGD.65, DGD.66, LMG.67, LHG.81
10 PLIP interactions:8 interactions with chain C, 1 interactions with chain J, 1 Ligand-Water interactions,- Hydrophobic interactions: C:W.45, C:I.69, C:I.69, C:W.407, C:W.407, C:F.418, C:F.418, C:F.418, J:V.21
- Metal complexes: H2O.21
CLA.53: 23 residues within 4Å:- Chain A: F.33, M.127, G.128, W.131
- Chain C: F.246, S.255, Y.256, G.259, A.260, M.263, L.420, H.423, L.424, A.427, R.431
- Chain H: V.12, V.16, F.23
- Ligands: CLA.8, LMG.48, CLA.55, BCR.63, DGD.64
15 PLIP interactions:8 interactions with chain C, 4 interactions with chain A, 3 interactions with chain H,- Hydrophobic interactions: C:F.246, C:Y.256, C:Y.256, C:L.420, A:W.131, A:W.131, A:W.131, H:V.12, H:V.16, H:F.23
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
- pi-Stacking: A:W.131
CLA.54: 18 residues within 4Å:- Chain C: L.143, L.147, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.8, CLA.49, CLA.55, BCR.63, LMT.72
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:L.143, C:L.147, C:L.147, C:W.232, C:W.241, C:A.242, C:F.246
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.55: 21 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, C.226, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.49, CLA.51, CLA.53, CLA.54, CLA.57, BCR.63
16 PLIP interactions:15 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.143, C:L.150, C:F.246, C:F.246, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:A.260, C:L.261
- Hydrogen bonds: C:H.146
- Metal complexes: H2O.16
CLA.56: 22 residues within 4Å:- Chain C: W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Chain J: V.21
- Ligands: SQD.47, CLA.52, CLA.57, CLA.58, CLA.59, DGD.65, LHG.81
11 PLIP interactions:10 interactions with chain C, 1 interactions with chain J,- Hydrophobic interactions: C:L.254, C:L.258, C:F.419, C:W.425, J:V.21
- Hydrogen bonds: C:N.21, C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.57: 22 residues within 4Å:- Chain C: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.51, CLA.55, CLA.56, CLA.58, CLA.59, CLA.60
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:N.21, C:L.24, C:I.25, C:L.31, C:A.34, C:H.38, C:W.133, C:W.133, C:W.133, C:Y.253
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.58: 17 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Chain J: P.20, L.24
- Ligands: CLA.50, CLA.51, CLA.52, CLA.56, CLA.57, CLA.59, LHG.81
9 PLIP interactions:7 interactions with chain C, 2 interactions with chain J,- Hydrophobic interactions: C:L.41, C:W.45, C:L.261, C:F.418, C:F.419, J:P.20, J:L.24
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.59: 31 residues within 4Å:- Chain C: T.6, N.7, R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, H.38, F.109
- Chain J: F.23, L.24, A.27, W.30, Q.31
- Chain R: I.19, I.20, L.23, N.29, L.30
- Chain S: M.19, V.20, V.23, A.28
- Ligands: CLA.56, CLA.57, CLA.58, BCR.96
19 PLIP interactions:3 interactions with chain R, 7 interactions with chain J, 6 interactions with chain C, 3 interactions with chain S,- Hydrophobic interactions: R:I.19, R:I.20, R:L.30, J:F.23, J:L.24, J:A.27, J:W.30, J:Q.31, C:L.24, C:L.24, C:F.109, S:V.20, S:V.23, S:A.28
- pi-Stacking: J:W.30, J:W.30
- Hydrogen bonds: C:R.23
- Water bridges: C:K.30
- Salt bridges: C:R.8
CLA.60: 19 residues within 4Å:- Chain C: H.35, A.39, L.107, L.122, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, I.152, G.153
- Ligands: CLA.50, CLA.51, CLA.57, CLA.61, BCR.62
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:H.35, C:L.122, C:F.128, C:F.129, C:Y.131, C:I.142, C:F.145, C:F.145, C:I.148, C:V.149, C:V.149, C:I.152, C:I.152
- Metal complexes: C:H.146
CLA.61: 16 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.51, CLA.60, BCR.62, LMG.68, LMG.108
13 PLIP interactions:13 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.106, C:L.107, C:Y.113, C:L.122, C:Y.125, C:F.129, C:F.129
- Salt bridges: C:H.114
- pi-Stacking: C:F.129
- Metal complexes: C:H.114
CLA.76: 28 residues within 4Å:- Chain A: M.183, F.206
- Chain D: W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.4, CLA.5, CLA.6, PHO.15
16 PLIP interactions:16 interactions with chain D,- Hydrophobic interactions: D:W.38, D:L.112, D:P.139, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:V.191, D:V.191, D:V.194, D:V.194, D:L.195, D:L.269
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.77: 25 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, T.102, F.103, L.106, H.107
- Chain G: L.38, L.42
- Chain Q: F.10, G.12, L.13, G.16, A.17, V.19
- Ligands: PL9.13, CLA.24, UNL.106
18 PLIP interactions:5 interactions with chain Q, 12 interactions with chain D, 1 interactions with chain G,- Hydrophobic interactions: Q:F.10, Q:L.13, Q:L.13, Q:V.19, Q:V.19, D:L.26, D:P.29, D:L.33, D:L.81, D:L.82, D:W.83, D:L.106, G:L.42
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103, D:F.103
- Metal complexes: D:H.107
CLA.112: 28 residues within 4Å:- Chain U: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, A.286, A.287, I.290
- Chain X: L.172, L.195, F.247
- Ligands: CLA.113, CLA.114, PHO.115, CLA.185, LHG.190
17 PLIP interactions:13 interactions with chain U, 4 interactions with chain X,- Hydrophobic interactions: U:F.119, U:F.182, U:F.186, U:Q.187, U:I.192, U:I.192, U:L.193, U:V.205, U:F.206, U:F.206, U:I.290, X:L.172, X:L.172, X:L.195, X:F.247
- Water bridges: U:I.290
- Metal complexes: U:H.198
CLA.113: 21 residues within 4Å:- Chain 7: F.10
- Chain U: T.45, V.157, F.158, M.172, I.176, T.179, F.180, M.183
- Chain X: M.188, V.191, A.192, L.195, G.196, L.199
- Ligands: CLA.112, PHO.115, SQD.120, LHG.157, CLA.185, PL9.188
8 PLIP interactions:1 interactions with chain 7, 4 interactions with chain U, 2 interactions with chain X, 1 Ligand-Water interactions,- Hydrophobic interactions: 7:F.10, U:T.45, U:V.157, U:F.158, U:F.180, X:V.191, X:L.199
- Metal complexes: H2O.46
CLA.114: 20 residues within 4Å:- Chain U: Q.199, V.202, A.203, F.206, G.207, L.210, W.278
- Chain X: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.112, PL9.123, PHO.125, LHG.127, DGD.177, CLA.185, LMG.195
13 PLIP interactions:7 interactions with chain X, 5 interactions with chain U, 1 Ligand-Water interactions,- Hydrophobic interactions: X:F.147, X:F.147, X:I.168, X:F.169, X:F.171, X:L.172, X:L.172, U:V.202, U:F.206, U:L.210, U:W.278
- pi-Stacking: U:F.206
- Metal complexes: H2O.48
CLA.116: 25 residues within 4Å:- Chain 1: V.8, Y.9, V.11, V.12, T.13, F.15, V.16
- Chain U: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Ligands: BCR.117, LMG.158, CLA.164, CLA.165, DGD.175
20 PLIP interactions:14 interactions with chain U, 6 interactions with chain 1,- Hydrophobic interactions: U:I.36, U:P.39, U:T.40, U:F.93, U:P.95, U:I.96, U:W.97, U:W.97, U:L.114, U:F.117, U:L.121, 1:V.11, 1:V.12, 1:F.15, 1:F.15, 1:V.16
- Hydrogen bonds: U:I.96, 1:Y.9
- Salt bridges: U:H.118
- Metal complexes: U:H.118
CLA.129: 9 residues within 4Å:- Chain 0: F.40, L.54
- Chain V: W.184, G.185, P.186, F.189
- Ligands: CLA.130, HTG.151, BCR.200
8 PLIP interactions:4 interactions with chain V, 3 interactions with chain 0, 1 Ligand-Water interactions,- Hydrophobic interactions: V:W.184, V:P.186, V:F.189, V:F.189, 0:F.40, 0:F.40, 0:L.54
- Metal complexes: H2O.50
CLA.130: 26 residues within 4Å:- Chain 0: F.37, F.40, I.44, L.45, Y.48
- Chain V: E.183, W.184, G.188, F.189, P.191, G.196, A.199, H.200, A.203, V.207, F.245, F.246, F.249, V.250
- Chain X: V.144, L.152
- Ligands: CLA.129, CLA.131, CLA.137, BCR.200, DGD.201
21 PLIP interactions:2 interactions with chain X, 13 interactions with chain V, 6 interactions with chain 0,- Hydrophobic interactions: X:V.144, X:L.152, V:W.184, V:F.189, V:F.189, V:F.189, V:A.199, V:H.200, V:V.207, V:V.207, V:F.245, V:F.246, V:F.249, V:F.249, 0:F.37, 0:F.40, 0:I.44, 0:I.44, 0:I.44
- Metal complexes: V:H.200
- pi-Stacking: 0:F.40
CLA.131: 22 residues within 4Å:- Chain 0: M.34, F.37, L.38, L.41
- Chain V: R.67, L.68, A.145, L.148, C.149, F.152, M.165, H.200, H.201, A.247, V.251, T.261
- Ligands: CLA.130, CLA.132, CLA.133, CLA.134, CLA.136, CLA.138
13 PLIP interactions:10 interactions with chain V, 3 interactions with chain 0,- Hydrophobic interactions: V:L.68, V:L.148, V:F.152, V:F.152, V:F.152, V:A.247, 0:F.37, 0:L.38, 0:L.41
- Hydrogen bonds: V:R.67
- Salt bridges: V:R.67
- pi-Cation interactions: V:H.200
- Metal complexes: V:H.201
CLA.132: 23 residues within 4Å:- Chain V: W.32, F.60, F.64, R.67, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.131, CLA.133, CLA.135, CLA.140, CLA.141, CLA.143, BCR.146, UNL.154
13 PLIP interactions:13 interactions with chain V,- Hydrophobic interactions: V:W.32, V:F.60, V:F.64, V:L.147, V:L.148, V:V.244, V:A.247, V:F.457, V:F.457, V:F.461, V:F.461
- Salt bridges: V:R.67
- Metal complexes: V:H.454
CLA.133: 26 residues within 4Å:- Chain V: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, A.204, G.208
- Ligands: CLA.131, CLA.132, CLA.134, CLA.137, CLA.138, CLA.140, CLA.143, UNL.154
12 PLIP interactions:12 interactions with chain V,- Hydrophobic interactions: V:T.26, V:A.30, V:W.32, V:A.33, V:L.68, V:V.95, V:L.102, V:L.142, V:A.145
- Water bridges: V:R.67
- Salt bridges: V:R.67
- Metal complexes: V:H.99
CLA.134: 25 residues within 4Å:- Chain V: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: SQD.11, UNL.14, CLA.131, CLA.133, CLA.144, BCR.147, UNL.154
11 PLIP interactions:11 interactions with chain V,- Hydrophobic interactions: V:L.68, V:W.90, V:W.90, V:A.98, V:V.101, V:L.102, V:L.148, V:F.155, V:F.161, V:F.161
- Metal complexes: V:H.156
CLA.135: 27 residues within 4Å:- Chain 4: F.31, F.35
- Chain 5: F.14
- Chain V: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain X: M.271
- Ligands: BCR.103, CLA.132, CLA.141, BCR.145, BCR.146, LHG.189, LMG.206
13 PLIP interactions:9 interactions with chain V, 2 interactions with chain 4, 1 interactions with chain 5, 1 Ligand-Water interactions,- Hydrophobic interactions: V:Y.39, V:F.60, V:F.60, V:F.60, V:F.324, V:W.449, V:W.449, 4:F.31, 4:F.35, 5:F.14
- Hydrogen bonds: V:G.327
- pi-Stacking: V:F.60
- Metal complexes: H2O.55
CLA.136: 27 residues within 4Å:- Chain 0: L.38, L.42, L.45
- Chain V: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain X: F.110, I.113, M.116, L.117, I.140
- Ligands: CLA.131, CLA.137, CLA.138, CLA.186, UNL.193, DGD.201
18 PLIP interactions:9 interactions with chain V, 6 interactions with chain X, 3 interactions with chain 0,- Hydrophobic interactions: V:A.242, V:F.245, V:F.246, V:F.462, V:F.462, V:I.466, V:L.473, X:F.110, X:F.110, X:I.113, X:M.116, X:L.117, X:I.140, 0:L.38, 0:L.42, 0:L.45
- Hydrogen bonds: V:S.238
- Metal complexes: V:H.465
CLA.137: 25 residues within 4Å:- Chain 0: T.26, T.27, L.29, M.30, F.33, L.41
- Chain V: F.138, L.142, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain X: F.110
- Ligands: CLA.130, CLA.133, CLA.136, CLA.138, UNL.193, BCR.200
16 PLIP interactions:11 interactions with chain V, 4 interactions with chain 0, 1 interactions with chain X,- Hydrophobic interactions: V:F.138, V:F.138, V:F.138, V:L.142, V:V.207, V:A.211, V:F.214, V:F.214, V:L.224, V:L.228, 0:L.29, 0:M.30, 0:F.33, 0:L.41, X:F.110
- Salt bridges: V:H.215
CLA.138: 19 residues within 4Å:- Chain V: H.22, L.134, M.137, F.138, H.141, L.142, A.145, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.131, CLA.133, CLA.136, CLA.137, CLA.140, CLA.143
7 PLIP interactions:6 interactions with chain V, 1 Ligand-Water interactions,- Hydrophobic interactions: V:L.134, V:M.137, V:F.138, V:F.138, V:T.235
- Hydrogen bonds: V:H.141
- Metal complexes: H2O.53
CLA.139: 21 residues within 4Å:- Chain V: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Ligands: CLA.140, CLA.141, CLA.142, LHG.157, LHG.189
14 PLIP interactions:14 interactions with chain V,- Hydrophobic interactions: V:W.4, V:H.8, V:T.9, V:L.237, V:L.237, V:I.241, V:F.457, V:F.461, V:F.463
- Hydrogen bonds: V:H.8
- Salt bridges: V:H.8, V:R.471
- pi-Stacking: V:W.467
- Metal complexes: V:H.468
CLA.140: 18 residues within 4Å:- Chain V: H.8, L.11, L.18, H.22, H.25, T.26, I.233, V.236, L.237, S.240, V.244
- Ligands: CLA.132, CLA.133, CLA.138, CLA.139, CLA.141, CLA.142, CLA.143
12 PLIP interactions:12 interactions with chain V,- Hydrophobic interactions: V:L.11, V:L.11, V:L.18, V:H.22, V:H.25, V:I.233, V:V.236, V:L.237, V:V.244
- Hydrogen bonds: V:S.240
- Salt bridges: V:H.22
- Metal complexes: V:H.22
CLA.141: 14 residues within 4Å:- Chain V: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.132, CLA.135, CLA.139, CLA.140, CLA.142, BCR.145, BCR.146, LHG.189, LMG.206
8 PLIP interactions:8 interactions with chain V,- Hydrophobic interactions: V:V.29, V:V.29, V:W.32, V:W.32, V:F.461, V:F.461
- Salt bridges: V:H.8
- Metal complexes: V:H.25
CLA.142: 23 residues within 4Å:- Chain 4: Q.8, V.10
- Chain 5: F.21, L.25
- Chain N: F.8
- Chain V: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Ligands: LMT.98, UNL.99, BCR.103, CLA.139, CLA.140, CLA.141, BCR.145, SQD.148, LMG.206
10 PLIP interactions:7 interactions with chain V, 2 interactions with chain 5, 1 interactions with chain N,- Hydrophobic interactions: V:V.7, V:V.7, V:L.11, V:M.24, V:L.28, V:W.114, 5:F.21, 5:L.25, N:F.8
- Metal complexes: V:H.8
CLA.143: 19 residues within 4Å:- Chain 0: L.6, L.10, L.13, N.14
- Chain V: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Ligands: CLA.132, CLA.133, CLA.138, CLA.140, CLA.144, BCR.147
10 PLIP interactions:6 interactions with chain V, 4 interactions with chain 0,- Hydrophobic interactions: V:I.19, V:L.132, V:I.140, V:L.144, 0:L.6, 0:L.10, 0:L.13, 0:L.13
- Hydrogen bonds: V:H.22
- Metal complexes: V:H.141
CLA.144: 14 residues within 4Å:- Chain 0: T.4, L.6, G.7, L.10
- Chain V: I.19, L.23, L.106, A.109, W.112, H.113, L.119
- Ligands: CLA.134, CLA.143, BCR.147
13 PLIP interactions:4 interactions with chain 0, 9 interactions with chain V,- Hydrophobic interactions: 0:L.6, 0:L.10, V:I.19, V:L.23, V:L.106, V:W.112, V:W.112, V:L.119
- Hydrogen bonds: 0:T.4
- Water bridges: 0:W.5
- pi-Stacking: V:W.112, V:W.112
- Metal complexes: V:H.113
CLA.160: 21 residues within 4Å:- Chain W: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.161, CLA.162, CLA.165, CLA.166, BCR.174
12 PLIP interactions:12 interactions with chain W,- Hydrophobic interactions: W:A.154, W:L.157, W:I.206, W:I.222, W:I.222, W:A.260, W:M.264, W:I.267, W:F.271, W:V.278
- Hydrogen bonds: W:Y.279
- Metal complexes: W:H.219
CLA.161: 22 residues within 4Å:- Chain W: W.45, I.69, H.73, L.77, L.156, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.160, CLA.162, CLA.163, CLA.169, CLA.171, HTG.180
14 PLIP interactions:14 interactions with chain W,- Hydrophobic interactions: W:W.45, W:W.45, W:I.69, W:L.77, W:F.164, W:L.261, W:M.264, W:A.268, W:L.408, W:F.419
- Hydrogen bonds: W:Y.279
- Salt bridges: W:H.73, W:H.412
- Metal complexes: W:H.412
CLA.162: 19 residues within 4Å:- Chain W: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100, L.261
- Ligands: CLA.160, CLA.161, CLA.166, CLA.168, CLA.169, CLA.171, CLA.172, LMG.179
7 PLIP interactions:7 interactions with chain W,- Hydrophobic interactions: W:V.43, W:A.46, W:L.77, W:V.96, W:L.261
- Salt bridges: W:H.73
- Metal complexes: W:H.100
CLA.163: 20 residues within 4Å:- Chain 3: P.17, V.21
- Chain U: F.285
- Chain W: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, F.418
- Ligands: CLA.161, CLA.169, DGD.176, DGD.177, LMG.178, LHG.191
15 PLIP interactions:12 interactions with chain W, 1 interactions with chain U, 1 interactions with chain 3, 1 Ligand-Water interactions,- Hydrophobic interactions: W:W.45, W:F.52, W:I.69, W:I.69, W:W.407, W:W.407, W:W.407, W:L.408, W:F.418, W:F.418, U:F.285, 3:V.21
- Hydrogen bonds: W:S.388
- pi-Stacking: W:W.407
- Metal complexes: H2O.63
CLA.164: 24 residues within 4Å:- Chain 1: V.16, F.19, F.23
- Chain U: F.33, S.124, M.127, G.128, W.131
- Chain W: F.246, S.255, Y.256, G.259, A.260, M.263, L.420, H.423, L.424, A.427, R.431
- Ligands: CLA.116, LMG.158, CLA.166, BCR.174, DGD.175
16 PLIP interactions:9 interactions with chain W, 3 interactions with chain 1, 4 interactions with chain U,- Hydrophobic interactions: W:F.246, W:Y.256, W:Y.256, W:L.420, 1:V.16, 1:F.19, 1:F.23, U:W.131, U:W.131, U:W.131
- Hydrogen bonds: W:Y.256
- Water bridges: W:I.247, W:I.247
- Salt bridges: W:R.431
- Metal complexes: W:H.423
- pi-Stacking: U:W.131
CLA.165: 20 residues within 4Å:- Chain W: L.143, L.147, L.195, L.196, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, F.246
- Ligands: CLA.116, LMT.126, CLA.160, CLA.166, BCR.174, DGD.175
8 PLIP interactions:8 interactions with chain W,- Hydrophobic interactions: W:L.147, W:L.147, W:L.195, W:L.196, W:W.232
- Hydrogen bonds: W:F.239
- Salt bridges: W:H.233
- Metal complexes: W:H.233
CLA.166: 22 residues within 4Å:- Chain W: M.139, T.140, I.142, L.143, H.146, L.147, L.150, C.226, W.241, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.160, CLA.162, CLA.164, CLA.165, CLA.168
15 PLIP interactions:14 interactions with chain W, 1 Ligand-Water interactions,- Hydrophobic interactions: W:M.139, W:T.140, W:I.142, W:L.143, W:L.150, W:W.241, W:F.246, W:F.246, W:W.248, W:Y.253, W:Y.253, W:Y.256, W:Y.256, W:L.261
- Metal complexes: H2O.59
CLA.167: 23 residues within 4Å:- Chain W: F.15, W.18, A.19, G.20, N.21, A.22, L.254, L.258, F.418, F.419, V.421, G.422, W.425, H.426, R.429
- Ligands: SQD.118, CLA.168, CLA.169, CLA.170, DGD.176, DGD.177, LMG.178, LHG.191
11 PLIP interactions:11 interactions with chain W,- Hydrophobic interactions: W:L.254, W:L.254, W:F.419, W:F.419, W:V.421, W:W.425
- Hydrogen bonds: W:N.21
- Salt bridges: W:H.426, W:R.429
- pi-Stacking: W:W.425
- Metal complexes: W:H.426
CLA.168: 24 residues within 4Å:- Chain W: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, H.146, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.162, CLA.166, CLA.167, CLA.169, CLA.170, CLA.171
13 PLIP interactions:13 interactions with chain W,- Hydrophobic interactions: W:L.24, W:I.25, W:L.31, W:A.34, W:H.38, W:Y.131, W:W.133, W:W.133, W:W.133, W:L.150, W:Y.253
- Hydrogen bonds: W:S.257
- Metal complexes: W:H.35
CLA.169: 18 residues within 4Å:- Chain 3: P.20, V.21, L.24
- Chain W: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Ligands: CLA.161, CLA.162, CLA.163, CLA.167, CLA.168, CLA.170, LHG.191
10 PLIP interactions:8 interactions with chain W, 2 interactions with chain 3,- Hydrophobic interactions: W:L.41, W:I.42, W:W.45, W:L.261, W:F.418, W:F.419, 3:P.20, 3:V.21
- Hydrogen bonds: W:N.21
- Metal complexes: W:H.38
CLA.170: 31 residues within 4Å:- Chain 3: F.23, L.24, A.27, W.30, Q.31
- Chain W: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, L.41, F.109, A.115, I.116
- Ligands: CLA.167, CLA.168, CLA.169, BCR.205, LMG.216
- Chain b: I.20, L.23, N.29, L.30
- Chain c: M.19, V.20, V.23, A.28
18 PLIP interactions:9 interactions with chain 3, 3 interactions with chain c, 5 interactions with chain W, 1 interactions with chain b,- Hydrophobic interactions: 3:F.23, 3:F.23, 3:L.24, 3:A.27, 3:W.30, 3:Q.31, c:V.20, c:V.23, c:A.28, W:L.24, W:L.41, W:A.115, b:I.20
- Water bridges: 3:Q.31
- pi-Stacking: 3:W.30, 3:W.30
- Hydrogen bonds: W:R.23
- Salt bridges: W:R.8
CLA.171: 19 residues within 4Å:- Chain W: L.32, H.35, A.39, L.107, L.122, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, G.153
- Ligands: CLA.161, CLA.162, CLA.168, CLA.172, BCR.173
14 PLIP interactions:14 interactions with chain W,- Hydrophobic interactions: W:L.32, W:H.35, W:L.122, W:F.128, W:Y.131, W:I.142, W:F.145, W:F.145, W:F.145, W:F.145, W:F.145, W:I.148, W:V.149
- Metal complexes: W:H.146
CLA.172: 16 residues within 4Å:- Chain W: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.162, CLA.171, BCR.173, LMG.179, LMG.216
15 PLIP interactions:15 interactions with chain W,- Hydrophobic interactions: W:L.32, W:V.36, W:V.106, W:L.107, W:Y.113, W:L.122, W:Y.125, W:F.129, W:F.129, W:F.129, W:F.129
- Hydrogen bonds: W:Y.113
- Salt bridges: W:H.114
- pi-Stacking: W:F.129
- Metal complexes: W:H.114
CLA.185: 30 residues within 4Å:- Chain U: M.183, F.206
- Chain X: L.35, W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.112, CLA.113, CLA.114, PHO.125, LMG.195
16 PLIP interactions:16 interactions with chain X,- Hydrophobic interactions: X:L.35, X:W.38, X:L.112, X:V.142, X:F.143, X:F.171, X:F.175, X:Q.176, X:T.182, X:V.191, X:V.194, X:V.194, X:L.195, X:L.269
- pi-Stacking: X:W.181
- Metal complexes: X:H.187
CLA.186: 25 residues within 4Å:- Chain 0: L.36, L.38, L.42
- Chain X: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Ligands: PL9.123, CLA.136, UNL.194
- Chain a: G.12, L.13, G.16, A.17
14 PLIP interactions:10 interactions with chain X, 1 interactions with chain a, 3 interactions with chain 0,- Hydrophobic interactions: X:L.26, X:P.29, X:L.33, X:W.83, X:W.83, X:L.106, a:L.13, 0:L.36, 0:L.38, 0:L.42
- Hydrogen bonds: X:L.82
- Salt bridges: X:H.107
- pi-Stacking: X:F.103
- Metal complexes: X:H.107
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.7: 26 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, I.115, F.119, Y.126, Q.130, A.146, Y.147, P.150, M.172, L.174, G.175, T.179, P.279, V.283
- Chain D: L.195, A.198, L.199, I.203, W.243, F.247
- Ligands: CLA.4, CLA.5, LHG.80
15 PLIP interactions:3 interactions with chain D, 12 interactions with chain A- Hydrophobic interactions: D:L.195, D:A.198, D:L.199, A:L.41, A:A.44, A:F.48, A:I.115, A:F.119, A:A.146, A:Y.147, A:Y.147, A:P.150, A:V.283
- Hydrogen bonds: A:Y.126, A:Q.130
PHO.15: 30 residues within 4Å:- Chain A: F.206, A.209, L.210, M.214, F.255, L.258, I.259
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.6, PL9.13, CLA.76
20 PLIP interactions:2 interactions with chain A, 18 interactions with chain D- Hydrophobic interactions: A:F.206, A:L.210, D:A.31, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:P.139, D:F.143, D:V.165, D:P.265, D:L.269
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136
PHO.115: 24 residues within 4Å:- Chain U: L.41, A.44, T.45, F.48, I.115, Y.126, Q.130, A.146, Y.147, P.150, M.172, G.175, P.279, V.283
- Chain X: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.112, CLA.113, SQD.120
14 PLIP interactions:12 interactions with chain U, 2 interactions with chain X- Hydrophobic interactions: U:L.41, U:A.44, U:F.48, U:I.115, U:A.146, U:Y.147, U:Y.147, U:P.150, U:P.279, U:V.283, X:L.195, X:A.202
- Hydrogen bonds: U:Q.130, U:Y.147
PHO.125: 27 residues within 4Å:- Chain U: F.206, A.209, L.210, M.214, L.258, I.259
- Chain X: L.27, A.31, L.35, W.38, I.104, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, L.269
- Ligands: CLA.114, PL9.123, CLA.185
20 PLIP interactions:18 interactions with chain X, 2 interactions with chain U- Hydrophobic interactions: X:A.31, X:L.35, X:W.38, X:W.38, X:W.38, X:W.38, X:I.104, X:L.112, X:F.115, X:A.135, X:P.139, X:F.143, X:V.165, X:P.265, X:L.269, U:F.206, U:A.209
- Hydrogen bonds: X:Q.119, X:N.132
- pi-Stacking: X:F.136
- 22 x BCR: BETA-CAROTENE(Non-covalent)
BCR.9: 15 residues within 4Å:- Chain A: V.35, L.42, A.43, I.46, I.50, A.51, A.55, I.96, W.105, L.106
- Chain H: F.15
- Ligands: CLA.8, UNL.14, UNL.93, HTG.153
Ligand excluded by PLIPBCR.33: 14 residues within 4Å:- Chain 7: F.19
- Chain B: M.24, L.28, C.111, W.114
- Chain L: L.13
- Ligands: CLA.23, CLA.29, CLA.30, BCR.34, SQD.36, LMG.37, LMT.211, BCR.212
Ligand excluded by PLIPBCR.34: 13 residues within 4Å:- Chain B: L.28, G.31, W.32, I.100, V.101, S.103, G.104
- Ligands: CLA.23, CLA.29, BCR.33, SQD.36, LMG.37, BCR.212
Ligand excluded by PLIPBCR.35: 16 residues within 4Å:- Chain 7: F.18, F.23
- Chain B: L.102, L.105, L.106, L.108, A.109, C.111, W.112, V.115
- Ligands: CLA.21, CLA.22, CLA.31, CLA.32, UNL.42, SQD.120
Ligand excluded by PLIPBCR.62: 14 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107
- Chain J: Y.6
- Chain S: V.51, G.55, N.58, F.59
- Ligands: CLA.60, CLA.61, LMG.68
Ligand excluded by PLIPBCR.63: 17 residues within 4Å:- Chain C: I.191, F.192, L.195, I.206, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.49, CLA.53, CLA.54, CLA.55
Ligand excluded by PLIPBCR.78: 15 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91
- Chain F: P.28, T.29, F.32, L.33, I.36
- Chain I: V.20, V.24
- Ligands: LMG.86
Ligand excluded by PLIPBCR.91: 13 residues within 4Å:- Chain G: F.33, L.36, F.37, V.39, F.40, I.43, L.54
- Chain Q: I.2, L.6, F.10
- Ligands: CLA.17, CLA.25, CLA.26
Ligand excluded by PLIPBCR.96: 17 residues within 4Å:- Chain C: A.37, G.40, L.41, L.101, S.104, A.105, G.108, A.115
- Chain J: Y.6, F.9, F.23, W.30
- Chain S: L.9, S.16
- Ligands: CLA.59, BCR.107, LMG.108
Ligand excluded by PLIPBCR.103: 20 residues within 4Å:- Chain A: L.28
- Chain N: F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain V: W.32, S.35, M.36, Y.39
- Ligands: SQD.11, CLA.135, CLA.142, BCR.145, BCR.146, SQD.148, LMT.155
Ligand excluded by PLIPBCR.107: 22 residues within 4Å:- Chain C: F.44
- Chain I: A.13, T.14, G.17, M.18
- Chain J: L.12, I.19, L.22, A.25, F.28, V.29, A.32
- Chain R: I.12, G.13, G.16, P.17
- Chain S: V.13, S.16, F.17
- Ligands: SQD.47, UNL.73, BCR.96
Ligand excluded by PLIPBCR.117: 15 residues within 4Å:- Chain 1: F.15
- Chain U: L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, L.106, P.111
- Ligands: HTG.41, CLA.116, UNL.124, UNL.202
Ligand excluded by PLIPBCR.145: 14 residues within 4Å:- Chain 5: A.10, L.13
- Chain N: F.19
- Chain V: M.24, L.28, C.111, W.114
- Ligands: BCR.103, CLA.135, CLA.141, CLA.142, BCR.146, SQD.148, LMG.206
Ligand excluded by PLIPBCR.146: 15 residues within 4Å:- Chain V: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104
- Ligands: SQD.11, BCR.103, CLA.132, CLA.135, CLA.141, BCR.145, SQD.148
Ligand excluded by PLIPBCR.147: 13 residues within 4Å:- Chain N: F.18, F.22, F.23
- Chain V: L.102, L.105, L.106, L.108, W.112
- Ligands: SQD.11, CLA.134, CLA.143, CLA.144, UNL.154
Ligand excluded by PLIPBCR.173: 13 residues within 4Å:- Chain 3: Y.6
- Chain W: F.94, V.98, I.102, S.103, V.106
- Ligands: CLA.171, CLA.172, LMG.179
- Chain c: V.51, G.55, N.58, F.59
Ligand excluded by PLIPBCR.174: 17 residues within 4Å:- Chain 1: V.20, F.23, L.24
- Chain W: I.191, F.192, Y.194, L.195, I.206, V.209, V.215, G.218, H.219, I.222, F.246
- Ligands: CLA.160, CLA.164, CLA.165
Ligand excluded by PLIPBCR.187: 16 residues within 4Å:- Chain 2: V.20, V.24
- Chain X: Y.32, L.33, G.36, G.37, L.39, T.40, F.91, F.103
- Chain Z: P.28, T.29, F.32, L.33, I.36
- Ligands: LMG.195
Ligand excluded by PLIPBCR.200: 15 residues within 4Å:- Chain 0: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43, L.54
- Ligands: CLA.129, CLA.130, CLA.137
- Chain a: T.1, I.2, L.6
Ligand excluded by PLIPBCR.205: 17 residues within 4Å:- Chain 3: Y.6, F.9, F.23
- Chain W: A.37, G.40, L.41, F.94, L.101, S.104, A.105, G.108, A.115
- Ligands: CLA.170, BCR.215
- Chain c: L.9, L.12, S.16
Ligand excluded by PLIPBCR.212: 20 residues within 4Å:- Chain 7: F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain B: W.32, S.35, M.36, Y.39
- Chain U: L.28
- Ligands: CLA.23, CLA.30, BCR.33, BCR.34, SQD.36, LMT.46, SQD.120
Ligand excluded by PLIPBCR.215: 23 residues within 4Å:- Chain 2: A.13, T.14, G.17, M.18
- Chain 3: L.12, L.16, I.19, L.22, F.23, A.25, L.26, F.28, V.29
- Chain W: F.44
- Ligands: SQD.118, BCR.205
- Chain b: I.12, G.13, G.16, P.17
- Chain c: S.16, F.17, V.20
Ligand excluded by PLIP- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 6 residues within 4Å:- Chain A: L.102, D.103
- Chain V: W.74, S.75
- Ligands: HTG.150, HTG.153
2 PLIP interactions:2 interactions with chain A- Water bridges: A:L.102, A:D.103
GOL.40: 7 residues within 4Å:- Chain B: W.274, D.275, R.356, R.357, M.358, P.359
- Chain D: E.327
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.275, B:S.277, B:R.356, B:R.356, B:R.357
- Water bridges: B:S.277, B:S.277
GOL.43: 6 residues within 4Å:- Chain B: I.12, L.132, G.231, N.232, I.233
- Chain G: Y.17
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:L.132, B:L.132, B:I.233
- Water bridges: B:I.12, B:D.14
GOL.45: 7 residues within 4Å:- Chain B: A.385, S.387, Q.393
- Chain O: L.17, Y.21, G.22, K.24
3 PLIP interactions:1 interactions with chain O, 2 interactions with chain B- Water bridges: O:Y.21
- Hydrogen bonds: B:A.385, B:Q.393
GOL.70: 10 residues within 4Å:- Chain A: L.341, L.343
- Chain C: M.378, T.379, H.380, A.381, G.391, V.392, E.395
- Chain P: K.47
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain P- Hydrogen bonds: C:M.378, C:A.381, C:V.392, P:K.47
- Water bridges: C:T.379, C:E.395, P:K.47, P:K.47
GOL.102: 2 residues within 4Å:- Chain M: P.18, R.40
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain M- Water bridges: C:N.355, C:N.355
- Hydrogen bonds: M:R.40, M:Y.238
GOL.119: 5 residues within 4Å:- Chain B: W.74, S.75
- Chain U: D.103
- Ligands: HTG.38, HTG.41
3 PLIP interactions:1 interactions with chain U, 1 interactions with chain B, 1 interactions with chain 6- Water bridges: U:D.103, 6:Q.107
- Hydrogen bonds: B:S.75
GOL.152: 8 residues within 4Å:- Chain V: I.12, N.13, P.130, A.131, L.132, G.231, N.232, I.233
3 PLIP interactions:3 interactions with chain V- Hydrogen bonds: V:L.132, V:I.233
- Water bridges: V:N.232
GOL.156: 7 residues within 4Å:- Chain V: W.274, D.275, S.277, R.356, R.357, P.359
- Chain X: E.327
5 PLIP interactions:4 interactions with chain V, 1 interactions with chain X- Hydrogen bonds: V:W.274, V:S.277, V:R.356, V:R.356, X:E.327
GOL.159: 10 residues within 4Å:- Chain 9: K.47
- Chain U: L.341, L.343
- Chain W: M.378, T.379, H.380, A.381, G.391, V.392, E.395
9 PLIP interactions:4 interactions with chain 9, 5 interactions with chain W- Hydrogen bonds: 9:K.47, W:M.378, W:A.381, W:V.392, W:E.395
- Water bridges: 9:S.39, 9:K.47, 9:K.47, W:T.379
GOL.210: 5 residues within 4Å:- Chain 6: L.13, K.16, P.18, R.40
- Chain W: N.355
4 PLIP interactions:3 interactions with chain 6, 1 interactions with chain W- Hydrogen bonds: 6:L.13, 6:R.40, 6:R.40, W:N.355
GOL.213: 6 residues within 4Å:- Chain 8: K.104
- Chain 9: I.45, G.133, K.134, Y.137
- Chain U: L.341
4 PLIP interactions:1 interactions with chain W, 3 interactions with chain 9- Water bridges: W:T.394, 9:K.134, 9:K.134
- Hydrogen bonds: 9:K.134
- 8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.11: 20 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, V.30, I.38, L.42, T.45
- Chain N: F.22
- Chain V: L.108, W.112, Y.116
- Ligands: CLA.5, UNL.14, UNL.93, BCR.103, CLA.134, BCR.146, BCR.147, HTG.153
12 PLIP interactions:3 interactions with chain V, 9 interactions with chain A- Hydrophobic interactions: V:L.108, A:N.26, A:L.28, A:V.30, A:I.38, A:I.38, A:L.42
- Hydrogen bonds: V:Y.116, V:Y.116, A:W.20, A:R.27, A:L.28
SQD.36: 17 residues within 4Å:- Chain 4: R.14, Y.18
- Chain 5: L.16, Y.26
- Chain 7: C.12, F.19, F.23
- Chain B: R.17, S.103, F.107, W.114
- Chain K: R.7
- Ligands: CLA.30, BCR.33, BCR.34, LMT.208, BCR.212
14 PLIP interactions:2 interactions with chain 5, 3 interactions with chain 7, 4 interactions with chain 4, 4 interactions with chain B, 1 interactions with chain K- Hydrophobic interactions: 5:L.16, 7:F.19, 7:F.19, 7:F.19, 4:Y.18, B:F.107
- Hydrogen bonds: 5:Y.26, 4:R.14, 4:R.14
- Salt bridges: 4:R.14, B:R.17, K:R.7
- Water bridges: B:R.17, B:R.17
SQD.47: 22 residues within 4Å:- Chain A: L.200, G.204, N.267, S.270, F.273, F.274, W.278, V.281, G.282
- Chain C: Q.10, A.16, W.18
- Chain D: S.220, F.222, R.223
- Chain I: I.21
- Chain J: A.25, F.28
- Ligands: CLA.56, UNL.73, LHG.81, BCR.107
13 PLIP interactions:1 interactions with chain I, 6 interactions with chain A, 2 interactions with chain J, 1 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: I:I.21, A:W.278, A:V.281, J:A.25, J:F.28, C:W.18
- Hydrogen bonds: A:N.267, A:S.270, A:S.270, D:S.220, C:Q.10
- Water bridges: A:N.267, C:Q.10
SQD.85: 13 residues within 4Å:- Chain D: R.14, R.16
- Chain E: E.7
- Chain F: F.15, T.16, V.17, V.20
- Chain Q: T.23, I.30, D.34
- Chain T: Q.29, L.33
- Ligands: PL9.13
9 PLIP interactions:3 interactions with chain D, 3 interactions with chain Q, 2 interactions with chain F, 1 interactions with chain T- Hydrogen bonds: D:R.14, F:V.17, T:Q.29
- Water bridges: D:W.11, Q:D.34, F:R.18
- Salt bridges: D:R.16
- Hydrophobic interactions: Q:I.30, Q:I.30
SQD.118: 23 residues within 4Å:- Chain 3: F.28
- Chain U: L.200, A.203, G.204, F.265, N.267, S.270, F.273, A.277, W.278, V.281
- Chain W: Q.10, A.16, W.17, W.18
- Chain X: S.220, F.222, R.223
- Ligands: CLA.167, LMG.178, UNL.183, LHG.191, BCR.215
15 PLIP interactions:9 interactions with chain U, 2 interactions with chain X, 3 interactions with chain W, 1 interactions with chain 3- Hydrophobic interactions: U:L.200, U:A.203, U:F.265, U:A.277, U:W.278, W:W.17, 3:F.28
- Hydrogen bonds: U:N.267, U:S.270, U:S.270, X:S.220, W:Q.10
- Water bridges: U:N.267, W:W.17
- Salt bridges: X:R.223
SQD.120: 18 residues within 4Å:- Chain 7: F.22
- Chain B: L.108, W.112, Y.116
- Chain U: W.20, N.26, R.27, L.28, L.42, T.45
- Ligands: CLA.22, BCR.35, CLA.113, PHO.115, UNL.124, LHG.190, UNL.202, BCR.212
9 PLIP interactions:6 interactions with chain U, 3 interactions with chain B- Hydrophobic interactions: U:L.28, U:L.42, U:T.45, B:L.108
- Hydrogen bonds: U:W.20, U:R.27, U:L.28, B:Y.116, B:Y.116
SQD.148: 20 residues within 4Å:- Chain 4: R.7
- Chain K: R.14, Y.18
- Chain L: V.15, L.16, Y.26
- Chain N: C.12, A.15, L.16, F.19, F.23
- Chain V: R.17, L.28, S.103, W.114
- Ligands: UNL.99, BCR.103, CLA.142, BCR.145, BCR.146
18 PLIP interactions:4 interactions with chain V, 2 interactions with chain 4, 4 interactions with chain K, 3 interactions with chain N, 5 interactions with chain L- Hydrophobic interactions: V:L.28, K:Y.18, N:A.15, N:F.19, N:F.19, L:V.15, L:L.16
- Water bridges: V:R.17, V:R.17, L:E.30, L:E.30
- Salt bridges: V:R.17, 4:R.7, K:R.14
- Hydrogen bonds: 4:R.7, K:R.14, K:R.14, L:Y.26
SQD.198: 11 residues within 4Å:- Chain X: R.16
- Chain Y: E.7
- Chain Z: I.14, F.15, T.16, V.17
- Ligands: PL9.123
- Chain a: T.23, L.27, I.30, D.34
6 PLIP interactions:3 interactions with chain Z, 2 interactions with chain a, 1 interactions with chain X- Hydrophobic interactions: Z:I.14, Z:I.14, a:L.27, a:I.30
- Hydrogen bonds: Z:V.17
- Salt bridges: X:R.16
- 2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.12: 9 residues within 4Å:- Chain A: D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain C: E.336, R.339
19 PLIP interactions:4 interactions with chain C, 11 interactions with chain A, 4 Ligand-Water interactions- Hydrogen bonds: C:R.339, C:R.339
- Metal complexes: C:E.336, C:E.336, A:D.170, A:D.170, A:E.189, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, H2O.1, H2O.3, H2O.3, H2O.5
- Water bridges: A:D.61
OEX.122: 10 residues within 4Å:- Chain U: D.61, D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain W: E.336, R.339
18 PLIP interactions:10 interactions with chain U, 4 interactions with chain W, 4 Ligand-Water interactions- Water bridges: U:D.61
- Metal complexes: U:D.170, U:D.170, U:E.189, U:H.332, U:E.333, U:E.333, U:D.342, U:D.342, U:A.344, W:E.336, W:E.336, H2O.45, H2O.45, H2O.47, H2O.48
- Hydrogen bonds: W:R.339, W:R.339
- 4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.13: 27 residues within 4Å:- Chain A: F.211, M.214, H.215, L.218, I.248, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain D: F.28, P.29, A.31, Y.32
- Chain F: V.17, A.21, T.24, L.25
- Chain Q: T.23, L.27
- Ligands: PHO.15, CLA.77, SQD.85, LHG.87
17 PLIP interactions:11 interactions with chain A, 3 interactions with chain D, 2 interactions with chain F, 1 interactions with chain Q- Hydrophobic interactions: A:F.211, A:F.211, A:L.218, A:I.248, A:F.255, A:I.259, A:F.265, A:L.271, A:L.271, A:F.274, D:P.29, D:A.31, D:Y.32, F:V.17, F:L.25, Q:L.27
- Hydrogen bonds: A:F.265
PL9.79: 35 residues within 4Å:- Chain A: V.49, F.52, I.53, I.77, I.176
- Chain D: M.188, M.189, A.192, G.193, L.199, L.200, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.23, V.26, L.29, L.30
- Chain N: F.10
- Ligands: CLA.5, CLA.23, LHG.80, LHG.97
30 PLIP interactions:17 interactions with chain D, 5 interactions with chain A, 4 interactions with chain K, 4 interactions with chain N- Hydrophobic interactions: D:M.188, D:M.189, D:A.192, D:L.199, D:L.200, D:I.203, D:T.207, D:A.239, D:W.243, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, A:V.49, A:F.52, A:I.53, A:I.77, A:I.176, K:L.23, K:V.26, K:L.29, K:L.30, N:F.10, N:F.10, N:F.10, N:F.10
- Hydrogen bonds: D:H.204, D:F.251
PL9.123: 27 residues within 4Å:- Chain U: F.211, M.214, H.215, L.218, I.248, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain X: V.20, F.28, A.31
- Chain Z: A.21, T.24, L.25
- Ligands: CLA.114, PHO.125, LHG.127, CLA.186, SQD.198
- Chain a: T.23, L.27
18 PLIP interactions:2 interactions with chain a, 13 interactions with chain U, 2 interactions with chain X, 1 interactions with chain Z- Hydrophobic interactions: a:T.23, a:L.27, U:F.211, U:M.214, U:L.218, U:I.248, U:A.251, U:H.252, U:F.255, U:I.259, U:F.265, U:L.271, U:L.271, U:F.274, X:V.20, X:A.31, Z:L.25
- Hydrogen bonds: U:H.215
PL9.188: 30 residues within 4Å:- Chain 4: L.23, V.26, L.29
- Chain 7: F.10
- Chain U: V.49, F.52, I.53, I.77, I.176
- Chain X: M.188, M.189, A.192, G.193, L.199, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264
- Ligands: CLA.113, LHG.157, LHG.190
25 PLIP interactions:15 interactions with chain X, 5 interactions with chain U, 2 interactions with chain 4, 3 interactions with chain 7- Hydrophobic interactions: X:M.189, X:A.192, X:L.199, X:T.207, X:A.239, X:W.243, X:F.251, X:F.251, X:F.251, X:L.257, X:F.260, X:F.263, X:V.264, U:V.49, U:F.52, U:I.53, U:I.77, U:I.176, 4:L.23, 4:L.29, 7:F.10, 7:F.10, 7:F.10
- Hydrogen bonds: X:T.207, X:F.251
- 18 x UNL: UNKNOWN LIGAND
UNL.14: 8 residues within 4Å:- Chain A: L.13, R.16, F.17, W.20
- Ligands: BCR.9, SQD.11, UNL.93, CLA.134
Ligand excluded by PLIPUNL.42: 6 residues within 4Å:- Chain B: W.90
- Ligands: CLA.20, CLA.21, CLA.22, CLA.32, BCR.35
Ligand excluded by PLIPUNL.73: 4 residues within 4Å:- Chain C: W.17
- Chain J: F.36
- Ligands: SQD.47, BCR.107
Ligand excluded by PLIPUNL.82: 4 residues within 4Å:- Chain D: W.22, E.121
- Chain Q: L.20
- Ligands: UNL.83
Ligand excluded by PLIPUNL.83: 11 residues within 4Å:- Chain B: A.227
- Chain D: D.9, K.13, W.22, R.124, L.125
- Chain Q: F.24
- Ligands: CLA.24, CLA.25, LMT.44, UNL.82
Ligand excluded by PLIPUNL.93: 9 residues within 4Å:- Chain A: L.102
- Chain H: M.1, L.4, T.7, V.11
- Ligands: BCR.9, SQD.11, UNL.14, HTG.153
Ligand excluded by PLIPUNL.94: 5 residues within 4Å:- Chain I: G.25, Y.29, Y.32
- Ligands: DGD.65, LMG.67
Ligand excluded by PLIPUNL.99: 5 residues within 4Å:- Chain 4: R.7
- Chain L: I.23
- Ligands: LMT.98, CLA.142, SQD.148
Ligand excluded by PLIPUNL.106: 6 residues within 4Å:- Chain D: W.83, G.89
- Chain Q: S.15, G.16, L.20
- Ligands: CLA.77
Ligand excluded by PLIPUNL.124: 5 residues within 4Å:- Chain U: R.16, F.17, W.20
- Ligands: BCR.117, SQD.120
Ligand excluded by PLIPUNL.154: 6 residues within 4Å:- Chain V: W.90, L.148
- Ligands: CLA.132, CLA.133, CLA.134, BCR.147
Ligand excluded by PLIPUNL.183: 5 residues within 4Å:- Chain 3: F.28, F.36
- Chain W: W.17
- Ligands: SQD.118, LHG.191
Ligand excluded by PLIPUNL.192: 6 residues within 4Å:- Chain X: W.22, S.23, I.25, F.120
- Ligands: UNL.193
- Chain a: L.20
Ligand excluded by PLIPUNL.193: 9 residues within 4Å:- Chain V: A.227, R.229
- Chain X: D.9, K.13, W.22
- Ligands: CLA.136, CLA.137, LMT.149, UNL.192
Ligand excluded by PLIPUNL.194: 7 residues within 4Å:- Chain X: L.82, W.83, G.89
- Ligands: CLA.186
- Chain a: S.15, G.16, L.20
Ligand excluded by PLIPUNL.202: 6 residues within 4Å:- Chain 1: M.1, T.3, L.4
- Ligands: HTG.41, BCR.117, SQD.120
Ligand excluded by PLIPUNL.203: 4 residues within 4Å:- Chain 2: G.25, Y.32
- Ligands: DGD.176, LMG.178
Ligand excluded by PLIPUNL.207: 3 residues within 4Å:- Chain 5: I.23
- Ligands: CLA.30, LMT.208
Ligand excluded by PLIP- 10 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.16: 24 residues within 4Å:- Chain A: S.232, N.234
- Chain B: W.4, Y.5, R.6, L.460, F.463, W.467, F.478
- Chain D: R.129, Y.131, I.134, W.256, F.259, F.263, T.267, M.271
- Chain K: L.23
- Chain L: P.18
- Ligands: CLA.23, CLA.27, CLA.29, LMG.37, LHG.97
18 PLIP interactions:2 interactions with chain A, 5 interactions with chain D, 9 interactions with chain B, 1 interactions with chain L, 1 interactions with chain K- Hydrogen bonds: A:S.232, A:N.234, D:R.129, D:Y.131
- Hydrophobic interactions: D:F.263, D:F.263, B:W.4, B:Y.5, B:L.460, L:P.18, K:L.23
- Water bridges: D:Y.131, B:R.6, B:R.6, B:R.6, B:R.6, B:R.6
- Salt bridges: B:R.6
LHG.80: 20 residues within 4Å:- Chain D: F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.13, T.15, S.16, Y.18, L.19, L.29
- Chain N: F.17, A.20
- Ligands: CLA.5, PHO.7, PL9.79, LHG.97
17 PLIP interactions:10 interactions with chain D, 4 interactions with chain K, 3 interactions with chain N- Hydrophobic interactions: D:F.247, D:F.247, D:F.251, D:F.260, D:F.260, K:L.29, N:F.17, N:F.17, N:A.20
- Hydrogen bonds: D:S.252, D:S.252, D:N.253, K:N.13, K:T.15, K:S.16
- Water bridges: D:S.252, D:S.252
LHG.81: 17 residues within 4Å:- Chain A: R.140, W.142, F.273
- Chain C: W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.47, CLA.52, CLA.56, CLA.58, DGD.66
9 PLIP interactions:3 interactions with chain D, 3 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: D:N.210, D:A.219, D:T.221, C:R.429, C:R.429
- Hydrophobic interactions: C:W.18, A:W.142
- Water bridges: A:R.140
- Salt bridges: A:R.140
LHG.87: 15 residues within 4Å:- Chain A: L.258, F.260, Y.262, A.263
- Chain D: F.17
- Chain E: T.4, T.5, E.7, R.8, P.9, F.10, S.11
- Chain F: R.18
- Ligands: CLA.6, PL9.13
9 PLIP interactions:7 interactions with chain E, 1 interactions with chain A, 1 interactions with chain F- Hydrophobic interactions: E:F.10, A:A.263
- Hydrogen bonds: E:T.4, E:T.4, E:T.5, E:E.7, E:F.10, E:S.11, F:R.18
LHG.97: 22 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.3, W.4, Y.5
- Chain D: W.256, F.263
- Chain K: E.11, L.12, N.13, S.16, L.19, G.20, L.22
- Chain L: P.18
- Ligands: CLA.5, LHG.16, CLA.27, CLA.30, LMG.37, PL9.79, LHG.80
13 PLIP interactions:4 interactions with chain K, 1 interactions with chain L, 2 interactions with chain B, 3 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: K:L.22, L:P.18, D:W.256, D:F.263, D:F.263
- Hydrogen bonds: K:E.11, K:N.13, K:S.16, B:W.4, B:Y.5, A:S.232, A:S.232, A:N.234
LHG.127: 14 residues within 4Å:- Chain U: L.258, I.259, F.260, Y.262, A.263
- Chain X: F.17, V.18, F.28
- Chain Y: P.9, F.10, S.11
- Chain Z: R.18
- Ligands: CLA.114, PL9.123
12 PLIP interactions:4 interactions with chain X, 1 interactions with chain Z, 3 interactions with chain Y, 4 interactions with chain U- Hydrophobic interactions: X:F.17, X:F.17, X:V.18, X:F.28, Y:F.10, U:F.260, U:F.260, U:A.263
- Hydrogen bonds: Z:R.18, Y:F.10, Y:S.11, U:Y.262
LHG.157: 25 residues within 4Å:- Chain 4: E.11, L.12, N.13, S.16, L.19, G.20, L.22, L.23, V.26
- Chain 5: V.17, P.18, F.21
- Chain U: S.232, N.234
- Chain V: P.3, W.4, Y.5
- Chain X: W.256, F.263
- Ligands: CLA.113, CLA.139, PL9.188, LHG.189, LHG.190, LMG.206
14 PLIP interactions:5 interactions with chain 4, 2 interactions with chain V, 3 interactions with chain U, 1 interactions with chain X, 3 interactions with chain 5- Hydrophobic interactions: 4:L.22, 4:V.26, X:F.263, 5:V.17, 5:P.18, 5:F.21
- Hydrogen bonds: 4:E.11, 4:N.13, 4:S.16, V:W.4, V:Y.5, U:S.232, U:S.232, U:N.234
LHG.189: 21 residues within 4Å:- Chain 4: L.23
- Chain 5: P.18
- Chain U: N.234
- Chain V: W.4, Y.5, R.6, F.463, W.467, F.478
- Chain X: R.129, Y.131, I.134, W.256, F.259, F.263, T.267
- Ligands: CLA.135, CLA.139, CLA.141, LHG.157, LMG.206
12 PLIP interactions:2 interactions with chain U, 4 interactions with chain V, 1 interactions with chain 4, 4 interactions with chain X, 1 interactions with chain 5- Hydrogen bonds: U:S.232, U:N.234, X:R.129, X:Y.131
- Hydrophobic interactions: V:W.4, V:Y.5, 4:L.23, X:F.263, X:F.263, 5:P.18
- Water bridges: V:R.6
- Salt bridges: V:R.6
LHG.190: 21 residues within 4Å:- Chain 4: N.13, T.15, S.16, Y.18, L.19
- Chain 7: F.17, A.20, I.21
- Chain X: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Ligands: CLA.112, SQD.120, LHG.157, PL9.188
12 PLIP interactions:6 interactions with chain X, 3 interactions with chain 4, 3 interactions with chain 7- Hydrophobic interactions: X:I.249, X:F.251, X:F.260, 7:F.17, 7:F.17, 7:I.21
- Hydrogen bonds: X:S.252, X:S.252, X:N.253, 4:N.13, 4:N.13, 4:S.16
LHG.191: 21 residues within 4Å:- Chain U: R.140, W.142, A.146, F.273, A.276, W.284
- Chain W: W.18, W.425, R.429
- Chain X: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.118, CLA.163, CLA.167, CLA.169, DGD.177, UNL.183
13 PLIP interactions:5 interactions with chain U, 5 interactions with chain W, 3 interactions with chain X- Hydrophobic interactions: U:W.142, U:A.146, U:A.276, U:W.284, W:W.18, W:W.18, W:W.425
- Salt bridges: U:R.140
- Hydrogen bonds: W:R.429, W:R.429, X:N.210, X:A.219, X:T.221
- 12 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
LMG.37: 21 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, A.453
- Chain D: I.274
- Chain K: F.35
- Chain L: N.4, L.6, A.10, L.13, F.14
- Ligands: LHG.16, CLA.23, CLA.29, CLA.30, BCR.33, BCR.34, LHG.97, LMT.211
12 PLIP interactions:1 interactions with chain D, 6 interactions with chain B, 4 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: D:I.274, B:A.453, L:A.10, L:L.13, L:F.14, K:F.35
- Hydrogen bonds: B:Y.39, B:T.326, B:T.326, L:N.4
- Water bridges: B:T.326, B:T.326
LMG.48: 14 residues within 4Å:- Chain A: F.93, W.97, E.98, F.117, L.121
- Chain C: L.196, F.200, E.203, W.205
- Chain H: K.5, Y.9
- Ligands: CLA.8, CLA.53, DGD.64
13 PLIP interactions:5 interactions with chain C, 7 interactions with chain A, 1 interactions with chain H- Hydrophobic interactions: C:F.200, C:W.205, A:F.93, A:F.117, A:L.121, A:L.121
- Water bridges: C:S.198, C:E.203, C:E.203, A:F.93
- Hydrogen bonds: A:W.97, A:E.98, H:Y.9
LMG.67: 13 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.21
- Chain J: D.14, V.18, V.21
- Chain R: Q.5, I.9
- Ligands: CLA.50, CLA.52, DGD.65, UNL.94
8 PLIP interactions:1 interactions with chain R, 3 interactions with chain J, 3 interactions with chain C, 1 interactions with chain I- Hydrophobic interactions: R:I.9, J:V.18, J:V.18, J:V.21, I:I.21
- Hydrogen bonds: C:H.56
- Water bridges: C:H.56
- Salt bridges: C:H.56
LMG.68: 14 residues within 4Å:- Chain C: V.43, W.79, D.89, F.91, V.95, V.96, V.99, H.100, S.103
- Chain S: F.59, V.62
- Ligands: CLA.51, CLA.61, BCR.62
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.43, C:W.79, C:V.96, C:V.99
LMG.86: 18 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: T.29, I.36, M.39, Q.40
- Chain I: F.27, G.30, A.31, L.35
- Ligands: CLA.6, DGD.66, BCR.78, MG.95
14 PLIP interactions:6 interactions with chain D, 4 interactions with chain F, 4 interactions with chain I- Hydrophobic interactions: D:L.39, D:F.63, D:F.63, D:F.63, F:T.29, I:F.27
- Hydrogen bonds: D:F.63, F:M.39, F:Q.40, I:G.30
- Water bridges: D:N.62, F:I.42, I:F.27, I:G.36
LMG.108: 13 residues within 4Å:- Chain C: F.109, Y.113
- Chain S: M.19, Y.27, W.33, K.37, I.40, F.41, S.44, W.47, I.48
- Ligands: CLA.61, BCR.96
10 PLIP interactions:4 interactions with chain C, 6 interactions with chain S- Hydrophobic interactions: C:F.109, C:F.109, S:I.40, S:W.47, S:W.47, S:I.48
- Hydrogen bonds: C:Y.113, C:Y.113
- Salt bridges: S:K.37, S:K.37
LMG.158: 19 residues within 4Å:- Chain 1: K.5, Y.9
- Chain U: F.93, W.97, E.98, F.117, L.120, L.121, F.155
- Chain W: L.196, K.197, S.198, F.200, E.203, W.205, F.266
- Ligands: CLA.116, CLA.164, DGD.175
16 PLIP interactions:2 interactions with chain 1, 6 interactions with chain W, 8 interactions with chain U- Hydrogen bonds: 1:Y.9, 1:Y.9, W:E.203, U:W.97, U:E.98
- Hydrophobic interactions: W:F.266, U:F.117, U:L.120, U:L.121, U:L.121, U:F.155, U:F.155
- Water bridges: W:S.198, W:S.198, W:S.198, W:S.198
LMG.178: 14 residues within 4Å:- Chain 2: I.21
- Chain 3: D.14, V.18, V.21
- Chain W: F.52, H.56, Q.66
- Ligands: SQD.118, CLA.163, CLA.167, DGD.176, UNL.203
- Chain b: Q.5, I.9
8 PLIP interactions:1 interactions with chain 2, 2 interactions with chain b, 3 interactions with chain 3, 2 interactions with chain W- Hydrophobic interactions: 2:I.21, b:I.9, b:I.9, 3:V.18, 3:V.18, 3:V.21
- Water bridges: W:H.56
- Salt bridges: W:H.56
LMG.179: 14 residues within 4Å:- Chain W: V.43, W.79, D.89, F.91, V.95, V.96, V.99, H.100, S.103
- Ligands: CLA.162, CLA.172, BCR.173, HTG.180
- Chain c: F.59
7 PLIP interactions:7 interactions with chain W- Hydrophobic interactions: W:V.43, W:W.79, W:V.96, W:V.99, W:V.99, W:V.99
- Hydrogen bonds: W:D.89
LMG.195: 18 residues within 4Å:- Chain 2: F.27, G.30, A.31, L.35
- Chain X: Y.57, G.60, C.61, N.62, F.63
- Chain Z: T.29, I.36, M.39, Q.40
- Ligands: CLA.114, DGD.177, CLA.185, BCR.187, MG.204
11 PLIP interactions:5 interactions with chain X, 4 interactions with chain 2, 2 interactions with chain Z- Hydrophobic interactions: X:F.63, X:F.63, X:F.63, 2:F.27
- Hydrogen bonds: X:F.63, 2:G.30, Z:M.39, Z:Q.40
- Water bridges: X:N.62, 2:F.27, 2:G.36
LMG.206: 18 residues within 4Å:- Chain 4: F.35
- Chain 5: N.4, L.6, A.10, L.13
- Chain V: Y.39, T.326, G.327, P.328, K.331, F.452, L.460
- Ligands: CLA.135, CLA.141, CLA.142, BCR.145, LHG.157, LHG.189
12 PLIP interactions:6 interactions with chain V, 4 interactions with chain 5, 2 interactions with chain 4- Hydrophobic interactions: V:F.452, V:L.460, 5:A.10, 5:L.13, 4:F.35, 4:F.35
- Hydrogen bonds: V:T.326, V:T.326, 5:N.4
- Water bridges: V:T.326, V:T.326, 5:N.4
LMG.216: 12 residues within 4Å:- Chain W: F.109, Y.113, R.117
- Ligands: CLA.170, CLA.172
- Chain c: M.19, Y.27, W.33, K.37, F.41, S.44, W.47
11 PLIP interactions:5 interactions with chain c, 6 interactions with chain W- Hydrophobic interactions: c:M.19, c:F.41, c:W.47, c:W.47, W:F.109, W:F.109, W:F.109
- Salt bridges: c:K.37
- Hydrogen bonds: W:Y.113, W:R.117, W:R.117
- 11 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.38: 12 residues within 4Å:- Chain 6: G.110, G.111
- Chain B: L.41, S.73, W.74, S.75, W.77, E.93, L.97
- Chain U: Y.73
- Ligands: GOL.119, LMT.121
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.74, B:L.97
- Hydrogen bonds: B:S.73, B:S.75, B:E.93
HTG.39: 13 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, F.429, E.430, F.431, T.433
- Chain M: Q.174, A.175, K.176, E.177, E.178
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain M- Hydrophobic interactions: B:Y.419
- Hydrogen bonds: B:K.340, B:K.340, B:E.430, B:F.431, M:Q.174, M:K.176, M:K.176
HTG.41: 9 residues within 4Å:- Chain B: W.74, D.86, G.88, F.89
- Chain U: I.50, L.102
- Ligands: BCR.117, GOL.119, UNL.202
5 PLIP interactions:2 interactions with chain B, 2 interactions with chain 6, 1 interactions with chain U- Hydrophobic interactions: B:W.74, U:I.50
- Hydrogen bonds: B:D.86
- Water bridges: 6:K.67, 6:K.67
HTG.69: 3 residues within 4Å:- Chain C: W.79, F.164
- Ligands: CLA.50
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.79
HTG.84: 7 residues within 4Å:- Chain D: E.1, G.3, W.4, F.5
- Chain G: W.24, P.28
- Ligands: LMT.44
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.3, D:G.3, D:F.5, D:D.6
HTG.105: 6 residues within 4Å:- Chain P: A.89, E.90, R.96, S.97, D.99, I.100
2 PLIP interactions:2 interactions with chain P- Hydrogen bonds: P:E.90, P:D.99
HTG.150: 10 residues within 4Å:- Chain A: Y.73
- Chain M: G.110, G.111
- Chain V: S.73, S.75, W.77, E.93, L.97
- Ligands: GOL.10, LMT.75
6 PLIP interactions:5 interactions with chain V, 1 interactions with chain M- Hydrophobic interactions: V:L.97
- Hydrogen bonds: V:S.73, V:S.75, V:E.93
- Water bridges: V:L.41, M:G.110
HTG.151: 3 residues within 4Å:- Chain V: W.184, I.206
- Ligands: CLA.129
4 PLIP interactions:4 interactions with chain V- Hydrophobic interactions: V:W.184, V:W.184, V:I.206
- Water bridges: V:W.184
HTG.153: 11 residues within 4Å:- Chain A: I.50, L.102
- Chain V: W.74, D.86, G.88, F.89, L.97
- Ligands: BCR.9, GOL.10, SQD.11, UNL.93
9 PLIP interactions:6 interactions with chain V, 2 interactions with chain A, 1 interactions with chain M- Hydrophobic interactions: V:W.74, V:L.97, A:I.50
- Hydrogen bonds: V:D.86, V:D.86, V:G.88, V:G.88
- Water bridges: A:L.102, M:K.67
HTG.180: 6 residues within 4Å:- Chain W: W.79, F.163, F.164, G.165
- Ligands: CLA.161, LMG.179
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:W.79
HTG.199: 3 residues within 4Å:- Chain 0: W.24, P.28
- Chain X: W.4
No protein-ligand interaction detected (PLIP)- 14 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.44: 14 residues within 4Å:- Chain B: R.223, K.226, K.497, D.500
- Chain D: R.2, F.5, D.6, D.9, D.10
- Chain G: W.24, M.34
- Chain Q: R.38
- Ligands: UNL.83, HTG.84
9 PLIP interactions:5 interactions with chain B, 1 interactions with chain Q, 1 interactions with chain G, 2 interactions with chain D- Hydrogen bonds: B:K.226, B:K.226, B:K.497, B:D.500, Q:R.38, D:R.2, D:D.9
- Salt bridges: B:R.223
- Hydrophobic interactions: G:W.24
LMT.46: 10 residues within 4Å:- Chain 5: M.1
- Chain 7: M.1, I.4, F.8
- Chain B: S.35, A.42
- Chain U: L.72
- Ligands: LMT.121, LMT.211, BCR.212
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain 7, 1 interactions with chain U- Hydrophobic interactions: B:A.42, 7:I.4
- Water bridges: U:L.72
LMT.72: 9 residues within 4Å:- Chain A: W.14, E.15
- Chain C: W.241, R.244
- Chain H: L.24, S.25, G.26, R.30
- Ligands: CLA.54
6 PLIP interactions:2 interactions with chain H, 4 interactions with chain C- Hydrogen bonds: H:R.30, C:R.244, C:R.244
- Water bridges: H:R.30
- Hydrophobic interactions: C:W.241, C:W.241
LMT.75: 9 residues within 4Å:- Chain A: L.72, Y.73
- Chain D: R.294
- Chain M: G.110
- Chain V: L.38, L.41, A.42
- Ligands: HTG.150, LMT.155
6 PLIP interactions:2 interactions with chain M, 2 interactions with chain V, 2 interactions with chain D- Hydrogen bonds: M:G.110, V:A.42, D:R.294, D:R.294
- Water bridges: M:G.111
- Hydrophobic interactions: V:L.38
LMT.88: 4 residues within 4Å:- Chain E: F.31, W.35, S.39
- Chain F: F.41
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:F.31, E:W.35, F:F.41
LMT.98: 13 residues within 4Å:- Chain 4: P.9, V.10
- Chain 5: V.20, I.24, Q.28, Q.32
- Chain L: V.27, E.30, S.31, Q.32, Q.33
- Ligands: UNL.99, CLA.142
9 PLIP interactions:3 interactions with chain L, 3 interactions with chain 5, 3 interactions with chain 4- Hydrogen bonds: L:E.30, L:E.30, L:Q.33, 5:Q.28, 4:V.10, 4:V.10
- Hydrophobic interactions: 5:V.20, 5:I.24
- Water bridges: 4:R.7
LMT.100: 8 residues within 4Å:- Chain 5: L.6
- Chain L: M.1, Q.5, A.12
- Chain N: I.4, F.8
- Chain V: Y.39
- Ligands: LMT.155
7 PLIP interactions:1 interactions with chain 5, 3 interactions with chain N, 1 interactions with chain V, 2 interactions with chain L- Water bridges: 5:N.4
- Hydrophobic interactions: N:I.4, N:F.8, N:F.8, L:A.12
- Hydrogen bonds: V:Y.39, L:Q.5
LMT.121: 8 residues within 4Å:- Chain B: L.41, A.42
- Chain U: I.53, L.72, Y.73
- Chain X: R.294
- Ligands: HTG.38, LMT.46
6 PLIP interactions:3 interactions with chain U, 2 interactions with chain X, 1 interactions with chain B- Hydrophobic interactions: U:I.53
- Hydrogen bonds: U:L.72, X:R.294, X:R.294
- Water bridges: U:Y.73, B:F.44
LMT.126: 10 residues within 4Å:- Chain 1: L.24, S.25, G.26, R.30
- Chain U: N.12, W.14, E.15
- Chain W: W.241, R.244
- Ligands: CLA.165
7 PLIP interactions:3 interactions with chain W, 2 interactions with chain 1, 2 interactions with chain U- Hydrophobic interactions: W:W.241
- Hydrogen bonds: W:R.244, W:R.244, 1:S.25, 1:R.30, U:N.12, U:E.15
LMT.149: 13 residues within 4Å:- Chain 0: W.24, A.31, M.34
- Chain V: R.223, L.224, K.226, A.227, K.497, D.500
- Chain X: F.5, D.6, D.9
- Ligands: UNL.193
9 PLIP interactions:2 interactions with chain X, 5 interactions with chain V, 2 interactions with chain 0- Hydrophobic interactions: X:F.5, V:L.224, V:A.227, 0:W.24, 0:A.31
- Hydrogen bonds: X:D.6, V:R.223
- Salt bridges: V:R.223, V:K.226
LMT.155: 7 residues within 4Å:- Chain A: L.72
- Chain N: I.4, V.7
- Chain V: A.42
- Ligands: LMT.75, LMT.100, BCR.103
3 PLIP interactions:3 interactions with chain N- Hydrophobic interactions: N:I.4, N:V.7
- Water bridges: N:T.3
LMT.196: 6 residues within 4Å:- Chain 2: V.22
- Chain Y: W.35, S.39
- Chain Z: F.41, I.42, Q.43
4 PLIP interactions:2 interactions with chain Z, 1 interactions with chain Y, 1 interactions with chain 2- Hydrophobic interactions: Z:F.41, Y:W.35, 2:V.22
- Hydrogen bonds: Z:Q.43
LMT.208: 15 residues within 4Å:- Chain 5: V.27, E.30, S.31, Q.32, Q.33, K.34
- Chain K: P.9, V.10
- Chain L: V.20, I.24, Q.28, Q.32
- Ligands: CLA.30, SQD.36, UNL.207
9 PLIP interactions:4 interactions with chain L, 3 interactions with chain 5, 2 interactions with chain K- Hydrophobic interactions: L:V.20, L:I.24
- Hydrogen bonds: L:Q.28, L:Q.32, 5:Q.32, 5:K.34, 5:K.34, K:V.10, K:V.10
LMT.211: 9 residues within 4Å:- Chain 5: A.12
- Chain 7: M.1, I.4, F.8
- Chain B: Y.39
- Chain L: L.6
- Ligands: BCR.33, LMG.37, LMT.46
5 PLIP interactions:4 interactions with chain 7, 1 interactions with chain 5- Hydrophobic interactions: 7:I.4, 7:F.8, 5:A.12
- Water bridges: 7:E.2, 7:E.2
- 8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.64: 29 residues within 4Å:- Chain A: L.91, S.148, A.152, I.160, I.163
- Chain C: P.199, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, F.417, L.420
- Ligands: CLA.8, LMG.48, CLA.53
19 PLIP interactions:16 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:P.199, C:W.205, C:V.207, C:F.266, C:F.417, C:L.420, A:A.152, A:I.160, A:I.163
- Hydrogen bonds: C:G.202, C:N.276, C:T.277, C:T.277, C:D.342, C:D.342, C:R.344, C:R.344
- Water bridges: C:G.202, C:D.342
DGD.65: 20 residues within 4Å:- Chain A: H.195, F.197
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411
- Chain I: F.28, Y.32
- Ligands: CLA.52, CLA.56, DGD.66, LMG.67, UNL.94
15 PLIP interactions:10 interactions with chain C, 2 interactions with chain A, 3 interactions with chain I- Hydrophobic interactions: C:L.386, C:W.407, A:F.197, A:F.197, I:F.28, I:F.28
- Hydrogen bonds: C:S.388, C:N.400, C:N.400, C:V.402, C:V.402
- Water bridges: C:E.65, C:G.67, C:G.67, I:Y.32
DGD.66: 25 residues within 4Å:- Chain A: Q.199, L.200, F.300, N.301, F.302, S.305
- Chain C: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain I: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain P: Q.34
- Ligands: CLA.6, CLA.52, DGD.65, LHG.81, LMG.86
14 PLIP interactions:5 interactions with chain C, 2 interactions with chain P, 3 interactions with chain A, 4 interactions with chain I- Hydrogen bonds: C:N.387, C:N.397, C:S.398, C:V.399, P:Q.34, P:Q.34, A:S.305, I:Y.32, I:G.36, I:S.38
- Water bridges: C:N.400, I:G.36
- Hydrophobic interactions: A:L.200, A:F.300
DGD.92: 24 residues within 4Å:- Chain B: Y.192, F.249, G.253, Y.257, Y.272, Q.273, S.276, Y.278, F.462
- Chain D: G.76, H.77, I.113, I.149, L.152, G.153, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.18, CLA.24
20 PLIP interactions:7 interactions with chain G, 7 interactions with chain D, 6 interactions with chain B- Hydrophobic interactions: G:Y.48, G:Y.48, G:Y.48, D:I.113, D:I.149, D:L.152, D:L.281, B:Y.257, B:F.462
- Hydrogen bonds: G:N.49, G:V.59, G:S.60, G:W.61, D:H.77, D:S.155, B:Y.192, B:Y.192, B:S.276, B:S.276
- Water bridges: D:G.76
DGD.175: 33 residues within 4Å:- Chain U: L.91, S.148, L.151, A.152, F.155, L.159, I.163
- Chain W: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, M.263, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.116, LMG.158, CLA.164, CLA.165
22 PLIP interactions:16 interactions with chain W, 6 interactions with chain U- Hydrophobic interactions: W:F.200, W:W.205, W:V.207, W:F.266, W:F.266, W:F.266, W:L.420, U:L.151, U:F.155, U:F.155, U:F.155, U:L.159, U:I.163
- Hydrogen bonds: W:G.202, W:N.276, W:T.277, W:T.277, W:T.277, W:D.342, W:D.342, W:R.344, W:R.344
DGD.176: 19 residues within 4Å:- Chain 2: F.28, Y.32
- Chain U: F.197, L.297
- Chain W: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, S.411
- Ligands: CLA.163, CLA.167, DGD.177, LMG.178, UNL.203
16 PLIP interactions:11 interactions with chain W, 2 interactions with chain 2, 3 interactions with chain U- Hydrophobic interactions: W:L.386, 2:F.28, U:F.197, U:F.197, U:L.297
- Hydrogen bonds: W:S.388, W:N.400, W:N.400, W:V.402, W:V.402, W:W.407
- Water bridges: W:E.65, W:Q.66, W:Q.66, W:G.67, 2:Y.32
DGD.177: 26 residues within 4Å:- Chain 2: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain 9: Q.34
- Chain U: Q.199, L.200, F.300, N.301, F.302, S.305
- Chain W: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Ligands: CLA.114, CLA.163, CLA.167, DGD.176, LHG.191, LMG.195
15 PLIP interactions:4 interactions with chain U, 4 interactions with chain 2, 5 interactions with chain W, 2 interactions with chain 9- Hydrophobic interactions: U:Q.199, U:L.200, U:L.200
- Hydrogen bonds: U:S.305, 2:G.36, 2:S.38, W:N.387, W:N.397, W:S.398, W:V.399, 9:Q.34, 9:Q.34
- Water bridges: 2:G.36, 2:S.38, W:N.397
DGD.201: 25 residues within 4Å:- Chain 0: L.45, Y.48, N.49, V.59, S.60, W.61
- Chain V: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, F.462
- Chain X: G.76, H.77, F.110, I.113, V.144, I.149, L.152, G.153, L.281
- Ligands: CLA.130, CLA.136
23 PLIP interactions:10 interactions with chain X, 4 interactions with chain V, 9 interactions with chain 0- Hydrophobic interactions: X:F.110, X:I.113, X:V.144, X:I.149, X:L.152, X:L.281, V:Y.257, V:F.462, V:F.462, 0:Y.48, 0:Y.48, 0:Y.48
- Hydrogen bonds: X:H.77, X:S.155, V:Y.192, 0:N.49, 0:V.59, 0:S.60, 0:W.61
- Water bridges: X:G.76, X:H.77, 0:S.60, 0:S.60
- 7 x CA: CALCIUM ION(Non-covalent)
CA.71: 6 residues within 4Å:- Chain C: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:N.137, C:T.140, C:T.141, C:H.233, C:T.236
CA.90: 2 residues within 4Å:- Chain F: R.44
- Chain P: E.23
No protein-ligand interaction detected (PLIP)CA.101: 5 residues within 4Å:- Chain M: T.136, S.137, T.138, N.198, V.199
No protein-ligand interaction detected (PLIP)CA.128: 3 residues within 4Å:- Chain 9: E.23
- Chain U: A.309
- Chain Z: R.44
2 PLIP interactions:1 interactions with chain 9, 1 Ligand-Water interactions- Metal complexes: 9:E.23, H2O.70
CA.181: 6 residues within 4Å:- Chain W: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain W- Metal complexes: W:T.140, W:T.141, W:H.233, W:I.234, W:T.236
CA.182: 5 residues within 4Å:- Chain W: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:4 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: W:F.4, W:T.6, W:D.9, W:E.11, H2O.61
CA.209: 3 residues within 4Å:- Chain 6: T.136, N.198, V.199
3 PLIP interactions:2 interactions with chain 6, 1 Ligand-Water interactions- Metal complexes: 6:T.136, 6:V.199, H2O.73
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.74: 10 residues within 4Å:- Chain A: H.215, E.244, Y.246, H.272
- Chain D: H.204, V.208, Y.234, K.254, H.258
- Ligands: FE2.1
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:H.215, D:Y.234
BCT.184: 9 residues within 4Å:- Chain U: H.215, V.219, E.244, Y.246, H.272
- Chain X: H.204, Y.234, H.258
- Ligands: FE2.109
2 PLIP interactions:2 interactions with chain U- Hydrogen bonds: U:H.215, U:E.244
- 4 x HEC: HEME C(Non-covalent)(Covalent)
HEC.89: 19 residues within 4Å:- Chain E: R.8, F.10, I.13, R.18, Y.19, H.23, T.26, I.27, L.30
- Chain F: I.14, R.18, W.19, V.22, H.23, A.26, V.27, I.30
- Chain T: A.18, I.22
24 PLIP interactions:2 interactions with chain T, 9 interactions with chain E, 13 interactions with chain F,- Hydrophobic interactions: T:A.18, T:I.22, E:I.13, E:T.26, E:I.27, F:I.14, F:W.19, F:V.22, F:A.26, F:V.27, F:I.30
- Water bridges: E:R.8, E:R.18, F:I.14, F:T.16, F:R.18
- Salt bridges: E:R.8, E:R.18, F:R.18
- pi-Stacking: E:Y.19, F:W.19, F:W.19
- Metal complexes: E:H.23, F:H.23
HEC.104: 24 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
20 PLIP interactions:20 interactions with chain P,- Hydrophobic interactions: P:A.36, P:T.46, P:N.49, P:L.52, P:L.54, P:L.72, P:Y.75, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- Water bridges: P:N.49, P:Y.75
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
HEC.197: 16 residues within 4Å:- Chain Y: F.10, I.13, R.18, Y.19, I.22, H.23, T.26, I.27, L.30
- Chain Z: R.18, W.19, V.22, H.23, A.26, V.27, I.30
19 PLIP interactions:9 interactions with chain Z, 10 interactions with chain Y,- Hydrophobic interactions: Z:V.22, Z:A.26, Z:I.30, Y:F.10, Y:I.13, Y:I.22, Y:I.22, Y:T.26, Y:I.27, Y:I.27
- Water bridges: Z:R.18, Z:W.19
- Salt bridges: Z:R.18, Y:R.18
- pi-Stacking: Z:W.19, Z:W.19, Y:Y.19
- Metal complexes: Z:H.23, Y:H.23
HEC.214: 24 residues within 4Å:- Chain 9: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
17 PLIP interactions:17 interactions with chain 9,- Hydrophobic interactions: 9:T.46, 9:N.49, 9:L.52, 9:L.54, 9:L.59, 9:L.72, 9:Y.75, 9:I.88, 9:P.93, 9:I.115, 9:I.119
- Hydrogen bonds: 9:D.53, 9:Y.82
- Water bridges: 9:N.49
- pi-Stacking: 9:Y.75
- Metal complexes: 9:H.41, 9:H.92
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.95: 5 residues within 4Å:- Chain I: G.30, A.33, G.34, L.35
- Ligands: LMG.86
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.30, I:A.33, I:L.35, H2O.29
MG.204: 5 residues within 4Å:- Chain 2: G.30, A.33, G.34, L.35
- Ligands: LMG.195
4 PLIP interactions:3 interactions with chain 2, 1 Ligand-Water interactions- Metal complexes: 2:G.30, 2:A.33, 2:L.35, H2O.70
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, H. et al., Capturing structural changes of the S 1 to S 2 transition of photosystem II using time-resolved serial femtosecond crystallography. Iucrj (2021)
- Release Date
- 2021-04-28
- Peptides
- Photosystem II protein D1: AU
Photosystem II CP47 reaction center protein: BV
Photosystem II CP43 reaction center protein: CW
Photosystem II D2 protein: DX
Cytochrome b559 subunit alpha: EY
Cytochrome b559 subunit beta: FZ
Photosystem II reaction center protein H: G0
Photosystem II reaction center protein I: H1
Photosystem II reaction center protein J: I2
Photosystem II reaction center protein K: J3
Photosystem II reaction center protein L: K4
Photosystem II reaction center protein M: L5
Photosystem II manganese-stabilizing polypeptide: M6
Photosystem II reaction center protein T: N7
Photosystem II 12 kDa extrinsic protein: O8
Cytochrome c-550: P9
Photosystem II reaction center protein X: Qa
Photosystem II reaction center protein Ycf12: Rb
Photosystem II reaction center protein Z: Sc
Photosystem II protein Y: T - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AU
aB
BV
bC
CW
cD
DX
dE
EY
eF
FZ
fG
H0
hH
I1
iI
J2
jJ
K3
kK
L4
lL
M5
mM
O6
oN
T7
tO
U8
uP
V9
vQ
Xa
xR
Yb
yS
Zc
zT
R - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7cou.1
Structure of cyanobacterial photosystem II in the dark S1 state
Photosystem II protein D1
Toggle Identical (AU)Photosystem II CP47 reaction center protein
Toggle Identical (BV)Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Toggle Identical (G0)Photosystem II reaction center protein I
Toggle Identical (H1)Photosystem II reaction center protein J
Photosystem II reaction center protein K
Toggle Identical (J3)Photosystem II reaction center protein L
Toggle Identical (K4)Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Toggle Identical (M6)Photosystem II reaction center protein T
Toggle Identical (N7)Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Toggle Identical (P9)Photosystem II reaction center protein X
Toggle Identical (Qa)Photosystem II reaction center protein Ycf12
Toggle Identical (Rb)Photosystem II reaction center protein Z
Toggle Identical (Sc)Photosystem II protein Y
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1izl.1 | 1mz4.1 | 1s5l.1 | 1s5l.2 | 1w5c.1 | 1w5c.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 more...less...5b66.1 | 5e79.1 | 5e7c.1 | 5gth.1 | 5gth.2 | 5gti.1 | 5gti.2 | 5h2f.1 | 5h2f.2 | 5kaf.1 | 5kai.1 | 5mx2.1 | 5mx2.2 | 5tis.1 | 5v2c.1 | 5ws5.1 | 5ws5.2 | 5ws6.1 | 5ws6.2 | 5zzn.1 | 5zzn.2 | 6dhe.1 | 6dhf.1 | 6dhg.1 | 6dhh.1 | 6dho.1 | 6dhp.1 | 6jlj.1 | 6jlk.1 | 6jll.1 | 6jlm.1 | 6jln.1 | 6jlo.1 | 6jlp.1 | 6w1o.1 | 6w1p.1 | 6w1q.1 | 6w1r.1 | 6w1t.1 | 6w1u.1 | 6w1v.1 | 7cji.1 | 7cjj.1 | 7czl.1 | 7d1t.1 | 7d1u.1 | 7dxa.1 | 7dxh.1 | 7eda.1 | 7nho.1 | 7nhp.1 | 7nhq.1 | 7rf1.1 | 7rf2.1 | 7rf3.1 | 7rf4.1 | 7rf5.1 | 7rf6.1 | 7rf7.1 | 7rf8.1 | 7yq2.1 | 7yq7.1 | 8ez5.1 | 8f4c.1 | 8f4d.1 | 8f4e.1 | 8f4f.1 | 8f4g.1 | 8f4h.1 | 8f4i.1 | 8f4j.1 | 8f4k.1 | 8gn0.1 | 8gn1.1 | 8gn2.1 | 8ir5.1 | 8ir6.1 | 8ir7.1 | 8ir8.1 | 8ir9.1 | 8ira.1 | 8irb.1 | 8irc.1 | 8ird.1 | 8ire.1 | 8irf.1 | 8irg.1 | 8irh.1 | 8iri.1 | 9evx.1