SMTL ID : 4pj0.1

Structure of T.elongatus Photosystem II, rows of dimers crystal packing

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.44 Å
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
2 x FE: FE (III) ION(Non-covalent)
14 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
70 x CLA: CHLOROPHYLL A(Non-covalent)
22 x BCR: BETA-CAROTENE(Non-covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
6 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
10 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
10 x SO4: SULFATE ION(Non-functional Binders)
2 x BCT: BICARBONATE ION(Non-functional Binders)
29 x UNL: UNKNOWN LIGAND(Non-functional Binders)
8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
4 x PHO: PHEOPHYTIN A(Non-covalent)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
2 x HEC: HEME C(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Hellmich, J. et al., Native-like Photosystem II Superstructure at 2.44 angstrom Resolution through Detergent Extraction from the Protein Crystal. Structure (2014)
Release Date
2014-10-22
Peptides
Photosystem Q(B) protein 1: AT
CP47 protein: BU
Photosystem II CP43 protein: CV
Photosystem II D2 protein: DW
Cytochrome b559 subunit alpha: EX
Cytochrome b559 subunit beta: FY
Photosystem II reaction center protein H: GZ
Photosystem II reaction center protein I: H0
Photosystem II reaction center protein J: I1
Photosystem II reaction center protein K: J2
Photosystem II reaction center protein L: K3
Photosystem II reaction center protein M: L4
Photosystem II manganese-stabilizing polypeptide: M5
Photosystem II reaction center protein T: N6
Photosystem II 12 kDa extrinsic protein: O7
Cytochrome c-550: P8
Photosystem II reaction center protein Ycf12: Qc
Photosystem II reaction center X protein: R9
Photosystem II reaction center protein Z: Sd
Photosystem II protein Y: ab
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
T
a
B
B
U
b
C
C
V
c
D
D
W
d
E
E
X
e
F
F
Y
f
G
H
Z
h
H
I
0
i
I
J
1
j
J
K
2
k
K
L
3
l
L
M
4
m
M
O
5
o
N
T
6
t
O
U
7
u
P
V
8
v
Q
Y
c
y
R
X
9
x
S
Z
d
z
a
R
b
r
Membrane
We predict this structure to be a membrane protein.

Photosystem Q(B) protein 1

Toggle Identical (AT)

CP47 protein

Photosystem II CP43 protein

Toggle Identical (CV)

Photosystem II D2 protein

Toggle Identical (DW)

Cytochrome b559 subunit alpha

Cytochrome b559 subunit beta

Toggle Identical (FY)

Photosystem II reaction center protein H

Toggle Identical (GZ)

Photosystem II reaction center protein I

Photosystem II reaction center protein J

Photosystem II reaction center protein K

Toggle Identical (J2)

Photosystem II reaction center protein L

Toggle Identical (K3)

Photosystem II reaction center protein M

Toggle Identical (L4)

Photosystem II manganese-stabilizing polypeptide

Photosystem II reaction center protein T

Toggle Identical (N6)

Photosystem II 12 kDa extrinsic protein

Toggle Identical (O7)

Cytochrome c-550

Toggle Identical (P8)

Photosystem II reaction center protein Ycf12

Toggle Identical (Qc)

Photosystem II reaction center X protein

Photosystem II reaction center protein Z

Toggle Identical (Sd)

Photosystem II protein Y

Related Entries With Identical Sequence

1izl.1 | 1s5l.1 | 1s5l.2 | 1w5c.1 | 1w5c.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 | 5b66.1 | 5e79.1  more...