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SMTL ID : 9rfx.1

Crystal structure of Endothiapepsin in complex with follow-up compound EOS71605 from ECBL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x 01: 2-[3,5-bis(fluoranyl)phenoxy]-2-methyl-propan-1-amine

01.1:

11 residues within 4Å:

Chain A: D.33, D.35, Y.79, D.81, S.83, S.115, F.116, D.119, I.122, L.125, G.221

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:F.116, A:I.122, A:L.125
Hydrogen bonds: A:S.83, A:S.115, A:S.115

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2:

3 residues within 4Å:

Chain A: G.205, S.206, Q.238

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:Q.238
Hydrogen bonds: A:S.206
Water bridges: A:V.204, A:Q.238

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

5 residues within 4Å:

Chain A: A.187, S.189, E.196, W.197, T.198

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:A.187, A:E.196
Water bridges: A:T.198

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

4 residues within 4Å:

Chain A: G.37, I.77, S.78, L.133

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Benz, L.S. et al., From Fragments to Follow-Ups: Rapid Hit Expansion by making use of EU-OPENSCREEN Resources. To be published

Release Date

2025-10-29

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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5j25.1 | 5lwr.1 | 5lws.1 | 5lwt.1 | 5lwu.1 | 5mb0.1 | 5mb3.1 | 5mb5.1 | 5mb6.1 | 5mb7.1 | 5og7.1 | 5oje.1 | 5oyq.1 | 5oyr.1 | 5oys.1 | 5oyt.1 | 5oyu.1 | 5oyv.1 | 5oyw.1 | 5oyx.1 | 5oyy.1 | 5oyz.1 | 5oz0.1 | 5oz1.1 | 5oz2.1 | 5oz3.1 | 5oz4.1 | 5oz5.1 | 5oz6.1 | 5oz7.1 | 5oz8.1 | 5oz9.1 | 5oza.1 | 5ozb.1 | 5ozc.1 | 5ozd.1 | 5oze.1 | 5ozf.1 | 5ozg.1 | 5ozh.1 | 5ozi.1 | 5ozj.1 | 5ozk.1 | 5ozl.1 | 5ozm.1 | 5ozn.1 | 5ozo.1 | 5ozp.1 | 5ozq.1 | 5ozr.1 | 5ozs.1 | 5ozt.1 | 5ozu.1 | 5ozv.1 | 5ozw.1 | 5ozx.1 | 5ozy.1 | 5ozz.1 | 5p00.1 | 5p01.1 | 5p02.1 | 5p03.1 | 5p04.1 | 5p05.1 | 5p06.1 | 5p07.1 | 5p08.1 | 5p09.1 | 5p0a.1 | 5p0b.1 | 5p0c.1 | 5p0d.1 | 5p0e.1 | 5p0f.1 | 5p0g.1 | 5p0h.1 | 5p0i.1 | 5p0j.1 | 5p0k.1 | 5p0l.1 | 5p0m.1 | 5p0n.1 | 5p0o.1 | 5p0p.1 | 5p0q.1 | 5p0r.1 | 5p0s.1 | 5p0t.1 | 5p0u.1 | 5p0v.1 | 5p0w.1 | 5p0x.1 | 5p0y.1 | 5p0z.1 | 5p10.1 | 5p11.1 | 5p12.1 | 5p13.1 | 5p14.1 | 5p15.1 | 5p16.1 | 5p17.1 | 5p18.1 | 5p19.1 | 5p1a.1 | 5p1b.1 | 5p1c.1 | 5p1d.1 | 5p1e.1 | 5p1f.1 | 5p1g.1 | 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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
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