SMTL ID : 6rny.1

PFV intasome - nucleosome strand transfer complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-4-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain I: D.131, D.188 Chain N: G.108 Chain P: A.16, G.17 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.131, I:D.131, I:D.188 MG.2: 4 residues within 4Å: Chain K: D.131, D.188 Chain M: C.17 Chain O: A.33 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:D.131, K:D.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson, M.D. et al., Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer. Nat Commun (2019)

Release Date

2019-09-25

Peptides

Histone H3.3: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B type 1-C/E/F/G/I: DH
Integrase: IJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

I
K

J
L

K
O

L
P

Histone H3.3

Histone H4

Histone H2A type 1

Histone H2B type 1-C/E/F/G/I

Integrase

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