- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 384 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x G4P: GUANOSINE-5',3'-TETRAPHOSPHATE(Non-covalent)
G4P.53: 16 residues within 4Å:- Chain X: D.23, A.24, G.25, K.26, T.27, T.28, H.92, N.142, K.143, T.258, A.259, L.260
- Chain Y: U.2656, A.2662
- Ligands: MG.280, MG.281
15 PLIP interactions:15 interactions with chain X- Hydrogen bonds: X:D.23, X:A.24, X:G.25, X:K.26, X:T.27, X:T.27, X:T.28, X:N.142, X:K.143, X:K.143, X:T.258, X:T.258, X:A.259, X:L.260
- Salt bridges: X:H.92
- 2 x ZN: ZINC ION(Non-covalent)
ZN.383: 4 residues within 4Å:- Chain o: C.16, C.18, C.37, C.40
4 PLIP interactions:4 interactions with chain o- Metal complexes: o:C.16, o:C.18, o:C.37, o:C.40
ZN.387: 4 residues within 4Å:- Chain t: C.11, C.14, C.27, H.33
4 PLIP interactions:4 interactions with chain t- Metal complexes: t:C.11, t:C.14, t:C.27, t:H.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, L. et al., The ribosome termination complex remodels release factor RF3 and ejects GDP. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-06-26
- Peptides
- 30S ribosomal protein S2: B
30S ribosomal protein S3: C
30S ribosomal protein S4: D
30S ribosomal protein S5: E
30S ribosomal protein S6: F
30S ribosomal protein S7: G
30S ribosomal protein S8: H
Small ribosomal subunit protein uS9: I
30S ribosomal protein S10: J
30S ribosomal protein S11: K
30S ribosomal protein S12: L
30S ribosomal protein S13: M
Small ribosomal subunit protein uS14: N
Small ribosomal subunit protein uS15: O
30S ribosomal protein S16: P
Small ribosomal subunit protein uS17: Q
30S ribosomal protein S18: R
30S ribosomal protein S19: S
30S ribosomal protein S20: T
30S ribosomal protein S21: U
Peptide chain release factor RF3: X
50S ribosomal protein L2: 0
50S ribosomal protein L3: 1
50S ribosomal protein L4: 2
50S ribosomal protein L5: 3
50S ribosomal protein L6: 4
50S ribosomal protein L10: 5
50S ribosomal protein L11: 6
50S ribosomal protein L13: 7
50S ribosomal protein L14: 8
50S ribosomal protein L15: 9
50S ribosomal protein L16: a
Large ribosomal subunit protein bL17: b
50S ribosomal protein L18: c
50S ribosomal protein L19: d
50S ribosomal protein L20: e
Ribosomal protein L21: f
50S ribosomal protein L22: g
50S ribosomal protein L23: h
50S ribosomal protein L24: i
50S ribosomal protein L25: j
50S ribosomal protein L27: k
50S ribosomal protein L28: l
50S ribosomal protein L29: m
Large ribosomal subunit protein uL30: n
50S ribosomal protein L31: o
50S ribosomal protein L32: p
Large ribosomal subunit protein bL33: q
50S ribosomal protein L34: r
50S ribosomal protein L35: s
50S ribosomal protein L36: t - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
bC
cD
dE
eF
fG
gH
hI
iJ
jK
kL
lM
mN
nO
oP
pQ
qR
rS
sT
tU
uX
v0
C1
D2
E3
F4
G5
I6
J7
L8
M9
Na
Ob
Pc
Qd
Re
Sf
Tg
Uh
Vi
Wj
Xk
Yl
Zm
1n
2o
3p
4q
5r
6s
7t
8
SMTL ID : 8fzf.1
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
30S ribosomal protein S2
30S ribosomal protein S3
30S ribosomal protein S4
30S ribosomal protein S5
30S ribosomal protein S6
30S ribosomal protein S7
30S ribosomal protein S8
Small ribosomal subunit protein uS9
30S ribosomal protein S10
30S ribosomal protein S11
30S ribosomal protein S12
30S ribosomal protein S13
Small ribosomal subunit protein uS14
Small ribosomal subunit protein uS15
30S ribosomal protein S16
Small ribosomal subunit protein uS17
30S ribosomal protein S18
30S ribosomal protein S19
30S ribosomal protein S20
30S ribosomal protein S21
Peptide chain release factor RF3
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
50S ribosomal protein L6
50S ribosomal protein L10
50S ribosomal protein L11
50S ribosomal protein L13
50S ribosomal protein L14
50S ribosomal protein L15
50S ribosomal protein L16
Large ribosomal subunit protein bL17
50S ribosomal protein L18
50S ribosomal protein L19
50S ribosomal protein L20
Ribosomal protein L21
50S ribosomal protein L22
50S ribosomal protein L23
50S ribosomal protein L24
50S ribosomal protein L25
50S ribosomal protein L27
50S ribosomal protein L28
50S ribosomal protein L29
Large ribosomal subunit protein uL30
50S ribosomal protein L31
50S ribosomal protein L32
Large ribosomal subunit protein bL33
50S ribosomal protein L34
50S ribosomal protein L35
50S ribosomal protein L36
Related Entries With Identical Sequence
1b75.1 | 1d6k.1 | 1dfu.1 | 2h5e.1 | 2h5e.2 | 2j28.1 | 2ykr.1 | 3bbx.1 | 3j45.1 | 3j46.1 | 3j5l.1 | 3j7z.1 | 3j8g.1 | 3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 3w1y.1 | 3w1y.2 | 487d.1 | 4a2i.1 | 4adv.1 | 4csu.1 | 4pe9.1 | 4pea.1 more...less...4peb.1 | 4pec.1 | 4tol.1 | 4tom.1 | 4ton.1 | 4too.1 | 4tou.1 | 4tov.1 | 4tow.1 | 4tox.1 | 4tp0.1 | 4tp1.1 | 4tp2.1 | 4tp3.1 | 4tp4.1 | 4tp5.1 | 4tp6.1 | 4tp7.1 | 4tp8.1 | 4tp9.1 | 4tpa.1 | 4tpb.1 | 4tpc.1 | 4tpd.1 | 4tpe.1 | 4tpf.1 | 4u1u.1 | 4u1u.2 | 4u1v.1 | 4u1v.2 | 4u20.1 | 4u20.2 | 4u24.1 | 4u24.2 | 4u25.1 | 4u25.2 | 4u26.1 | 4u26.2 | 4u27.1 | 4u27.2 | 4uy8.1 | 4v4h.1 | 4v4h.2 | 4v4q.1 | 4v4q.2 | 4v4v.1 | 4v4w.1 | 4v50.1 | 4v50.2 | 4v52.1 | 4v52.2 | 4v53.1 | 4v53.2 | 4v54.1 | 4v54.2 | 4v55.1 | 4v55.2 | 4v56.1 | 4v56.2 | 4v57.1 | 4v57.2 | 4v5b.1 | 4v5b.2 | 4v5h.1 | 4v5y.1 | 4v5y.2 | 4v64.1 | 4v64.2 | 4v65.1 | 4v66.1 | 4v69.1 | 4v6c.1 | 4v6c.2 | 4v6d.1 | 4v6d.2 | 4v6e.1 | 4v6e.2 | 4v6k.1 | 4v6l.1 | 4v6m.1 | 4v6n.1 | 4v6o.1 | 4v6p.1 | 4v6q.1 | 4v6r.1 | 4v6s.1 | 4v6t.1 | 4v6v.1 | 4v6y.1 | 4v6z.1 | 4v70.1 | 4v71.1 | 4v72.1 | 4v73.1 | 4v74.1 | 4v75.1 | 4v76.1 | 4v77.1 | 4v78.1 | 4v79.1 | 4v7a.1 | 4v7b.1 | 4v7c.1 | 4v7d.1 | 4v7i.1 | 4v7s.1 | 4v7s.2 | 4v7t.1 | 4v7t.2 | 4v7u.1 | 4v7u.2 | 4v7v.1 | 4v7v.2 | 4v85.1 | 4v89.1 | 4v8o.1 | 4v9c.1 | 4v9c.2 | 4v9d.1 | 4v9d.2 | 4v9o.1 | 4v9o.2 | 4v9o.3 | 4v9o.4 | 4v9p.1 | 4v9p.2 | 4v9p.3 | 4v9p.4 | 4wao.1 | 4wap.1 | 4waq.1 | 4waq.2 | 4war.1 | 4wf1.1 | 4wf1.2 | 4woi.1 | 4woi.2 | 4www.1 | 4www.2 | 4ybb.1 | 4ybb.2 | 5ady.1 | 5afi.1 | 5aka.1 | 5gad.1 | 5gae.1 | 5gaf.1 | 5gag.1 | 5gah.1 | 5h5u.1 | 5iqr.1 | 5it8.1 | 5it8.2 | 5j5b.1 | 5j5b.2 | 5j7l.1 | 5j7l.2 | 5j88.1 | 5j88.2 | 5j8a.1 | 5j8a.2 | 5j91.1 | 5j91.2 | 5jc9.1 | 5jc9.2 | 5jte.1 | 5ju8.1 | 5kcr.1 | 5kcs.1 | 5kps.1 | 5kpv.1 | 5kpw.1 | 5kpx.1 | 5l3p.1 | 5lza.1 | 5lzb.1 | 5lzc.1 | 5lzd.1 | 5lze.1 | 5lzf.1 | 5mdv.1 | 5mdw.1 | 5mdy.1 | 5mdz.1 | 5me0.1 | 5me1.1 | 5mgp.1 | 5my1.1 | 5nco.1 | 5no2.1 | 5no3.1 | 5no4.1 | 5np6.1 | 5nwy.1 | 5o2r.1 | 5u4i.1 | 5u4j.1 | 5u9f.1 | 5u9g.1 | 5uyk.1 | 5uyl.1 | 5uym.1 | 5uyn.1 | 5uyp.1 | 5uyq.1 | 5uz4.1 | 5wdt.1 | 5we4.1 | 5we6.1 | 5wf0.1 | 5wfk.1 | 5wfs.1 | 6awb.1 | 6awc.1 | 6awd.1 | 6bu8.1 | 6by1.1 | 6by1.2 | 6c4h.1 | 6c4i.1 | 6dnc.1 | 6enf.1 | 6enj.1 | 6enu.1 | 6gbz.1 | 6gc0.1 | 6gc4.1 | 6gc6.1 | 6gc7.1 | 6gc8.1 | 6gwt.1 | 6gxm.1 | 6gxn.1 | 6gxo.1 | 6gxp.1 | 6h4n.1 | 6h58.3 | 6h58.5 | 6h58.8 | 6h58.9 | 6h58.13 | 6h58.21 | 6h58.22 | 6h58.25 | 6h58.28 | 6h58.44 | 6h58.55 | 6h58.57 | 6h58.60 | 6h58.61 | 6h58.65 | 6h58.73 | 6h58.74 | 6h58.77 | 6h58.80 | 6h58.96 | 6hrm.1 | 6i0y.1 | 6i7v.15 | 6i7v.35 | 6i7v.42 | 6i7v.43 | 6i7v.48 | 6i7v.49 | 6i7v.53 | 6i7v.56 | 6i7v.57 | 6i7v.60 | 6i7v.67 | 6i7v.71 | 6i7v.72 | 6i7v.77 | 6i7v.78 | 6i7v.82 | 6i7v.85 | 6i7v.86 | 6i7v.89 | 6i7v.96 | 6lkq.1 | 6o7k.1 | 6o9j.1 | 6o9k.1 | 6ofx.1 | 6og7.1 | 6ogf.1 | 6ogg.1 | 6ogi.1 | 6om6.1 | 6ore.1 | 6orl.1 | 6osk.1 | 6osq.1 | 6ost.1 | 6ot3.1 | 6ouo.1 | 6pc5.1 | 6pc6.1 | 6pc7.1 | 6pc8.1 | 6pch.1 | 6pcq.1 | 6pcr.1 | 6pcs.1 | 6pct.1 | 6pj6.1 | 6q97.1 | 6q98.1 | 6q9a.1 | 6qdw.1 | 6qul.1 | 6s0k.1 | 6szs.1 | 6tbv.1 | 6tc3.1 | 6u48.1 | 6vwl.1 | 6vwm.1 | 6vwn.1 | 6vyx.1 | 6vyx.2 | 6vyx.3 | 6vyx.4 | 6vyx.5 | 6vyx.12 | 6vyx.13 | 6vyx.14 | 6vyx.17 | 6vyx.18 | 6vyx.19 | 6vyx.22 | 6vyx.23 | 6vyx.24 | 6vyx.27 | 6vyx.28 | 6vyx.29 | 6vyx.30 | 6vyx.31 | 6vyx.32 | 6vyx.33 | 6vyx.34 | 6vyx.35 | 6vyx.36 | 6vyx.37 | 6vyx.38 | 6vyx.39 | 6vyx.40 | 6vyx.41 | 6vyx.42 | 6vyx.43 | 6vyx.44 | 6vyx.45 | 6vyx.46 | 6vyx.47 | 6vyx.49 | 6vyx.50 | 6vyx.54 | 6vyx.55 | 6vyx.56 | 6vz3.1 | 6vz3.2 | 6vz3.5 | 6vz3.29 | 6vz3.40 | 6vz3.42 | 6vz3.43 | 6vz3.47 | 6vz3.49 | 6vz3.50 | 6w6k.1 | 6w77.1 | 6w7m.1 | 6w7n.1 | 6w7w.1 | 6wd0.1 | 6wd1.1 | 6wd2.1 | 6wd3.1 | 6wd4.1 | 6wd5.1 | 6wd6.1 | 6wd7.1 | 6wd8.1 | 6wd9.1 | 6wda.1 | 6wdb.1 | 6wdc.1 | 6wdd.1 | 6wde.1 | 6wdf.1 | 6wdg.1 | 6wdh.1 | 6wdi.1 | 6wdj.1 | 6wdk.1 | 6wdl.1 | 6wdm.1 | 6wnt.1 | 6wnv.1 | 6wnw.1 | 6wyv.1 | 6xe0.1 | 6xz7.1 | 6xza.1 | 6xzb.1 | 6y69.1 | 6ys3.1 | 6ysr.1 | 6yss.1 | 6yst.1 | 6ysu.1 | 6ztj.2 | 6ztj.3 | 6ztj.6 | 6ztj.7 | 6ztj.8 | 6ztj.9 | 6ztj.11 | 6ztj.12 | 6ztj.13 | 6ztj.14 | 6ztj.15 | 6ztj.16 | 6ztj.17 | 6ztj.18 | 6ztj.19 | 6ztj.20 | 6ztj.22 | 6ztj.23 | 6ztj.24 | 6ztj.25 | 6ztj.26 | 6ztj.28 | 6ztj.29 | 6ztj.30 | 6ztj.31 | 6ztj.32 | 6ztj.34 | 6ztj.35 | 6ztj.36 | 6ztj.37 | 6ztj.38 | 6ztj.39 | 6ztj.40 | 6ztj.41 | 6ztj.42 | 6ztj.43 | 6ztj.44 | 6ztj.45 | 6ztj.46 | 6ztj.47 | 6ztj.48 | 6ztj.49 | 6ztj.50 | 6ztj.52 | 6ztl.1 | 6ztm.1 | 6ztn.2 | 6ztn.3 | 6ztn.6 | 6ztn.7 | 6ztn.8 | 6ztn.9 | 6ztn.11 | 6ztn.12 | 6ztn.13 | 6ztn.14 | 6ztn.15 | 6ztn.16 | 6ztn.17 | 6ztn.18 | 6ztn.19 | 6ztn.20 | 6ztn.21 | 6ztn.22 | 6ztn.23 | 6ztn.24 | 6ztn.25 | 6ztn.27 | 6ztn.28 | 6ztn.29 | 6ztn.31 | 6ztn.32 | 6ztn.33 | 6ztn.34 | 6ztn.35 | 6ztn.36 | 6ztn.37 | 6ztn.38 | 6ztn.39 | 6ztn.40 | 6ztn.41 | 6ztn.42 | 6ztn.43 | 6ztn.44 | 6ztn.45 | 6ztn.46 | 6ztn.47 | 6zto.1 | 6ztp.1 | 6zu1.1 | 7abz.1 | 7ac7.1 | 7acj.1 | 7acr.1 | 7af3.1 | 7af5.1 | 7af8.1 | 7afa.1 | 7afd.1 | 7afh.1 | 7afi.1 | 7afk.1 | 7afl.1 | 7afn.1 | 7afo.1 | 7b5k.1 | 7bl2.1 | 7bl3.1 | 7bl4.1 | 7bl5.1 | 7bl6.1 | 7bod.1 | 7boe.1 | 7bof.1 | 7bog.1 | 7boh.1 | 7boi.1 | 7bv8.1 | 7cpj.1 | 7d6z.1 | 7d80.1 | 7jss.1 | 7jsw.1 | 7jsz.1 | 7jt1.1 | 7jt2.1 | 7jt3.1 | 7k00.1 | 7k50.1 | 7k51.1 | 7k52.1 | 7k53.1 | 7k54.1 | 7k55.1 | 7lv0.1 | 7lvk.1 | 7m5d.1 | 7n1p.1 | 7n2c.1 | 7n2u.1 | 7n2v.1 | 7n30.1 | 7n31.1 | 7nar.1 | 7nas.1 | 7nat.1 | 7nau.1 | 7nav.1 | 7nax.1 | 7nbu.1 | 7nso.1 | 7nsp.1 | 7nsq.1 | 7nwt.1 | 7nww.1 | 7o19.1 | 7o1a.1 | 7o1c.1 | 7o5h.1 | 7ode.1 | 7oe0.1 | 7oe1.1 | 7oi0.1 | 7oif.1 | 7oig.1 | 7oii.1 | 7oiz.1 | 7oj0.1 | 7ot5.1 | 7otc.1 | 7p3k.1 | 7pjs.1 | 7pjt.1 | 7pju.1 | 7pjv.1 | 7pjw.1 | 7pjx.1 | 7pjy.1 | 7pjz.1 | 7q4k.1 | 7qg8.1 | 7qgh.1 | 7qgn.1 | 7qgr.1 | 7qq3.1 | 7s1g.1 | 7s1h.1 | 7s1i.1 | 7s1j.1 | 7s1k.1 | 7sa4.1 | 7ss9.1 | 7ssd.1 | 7ssl.1 | 7ssn.1 | 7sso.1 | 7ssw.1 | 7st2.1 | 7st6.1 | 7st7.1 | 7tos.1 | 7ug7.1 | 7uph.1 | 7y7c.1 | 7y7d.1 | 7y7e.1 | 7y7f.1 | 7y7g.1 | 7y7h.1 | 7yla.1 | 7z20.1 | 7zod.1 | 7zp8.1 | 7zq5.1 | 7zq6.1 | 7zta.1 | 8a3l.1 | 8akn.1 | 8am9.1 | 8ana.1 | 8ap4.1 | 8aye.1 | 8b0x.1 | 8b7y.1 | 8bd5.1 | 8bf7.1 | 8bge.1 | 8bgh.1 | 8bh4.1 | 8bhj.1 | 8bhl.1 | 8bhn.1 | 8bhp.1 | 8bil.1 | 8bim.1 | 8c8x.1 | 8c8y.1 | 8c8z.1 | 8c90.1 | 8c91.1 | 8c92.1 | 8c93.1 | 8c94.1 | 8c95.1 | 8c96.1 | 8c97.1 | 8c98.1 | 8c99.1 | 8c9a.1 | 8c9b.1 | 8c9c.1 | 8ca7.1 | 8cai.1 | 8cam.1 | 8caz.1 | 8cep.1 | 8ceu.1 | 8cf1.1 | 8cf8.1 | 8cgd.1 | 8cgi.1 | 8cgj.1 | 8cgk.1 | 8cgr.1 | 8cgu.1 | 8cgv.1 | 8e30.1 | 8e32.1 | 8e33.1 | 8e35.1 | 8e36.1 | 8e3l.1 | 8e3m.1 | 8e3o.1 | 8e41.1 | 8e42.1 | 8e43.1 | 8e44.1 | 8e45.1 | 8e46.1 | 8e47.1 | 8e48.1 | 8e49.1 | 8ea3.1 | 8ea4.1 | 8eiu.1 | 8ekc.1 | 8emm.1 | 8eyq.1 | 8eyt.1 | 8fiz.1 | 8fto.1 | 8fzd.1 | 8fze.1 | 8fzg.1 | 8fzh.1 | 8fzi.1 | 8fzj.1 | 8g2u.1 | 8g31.1 | 8g34.1 | 8g38.1 | 8g6w.1 | 8g6x.1 | 8g6y.1 | 8g7p.1 | 8g7q.1 | 8g7r.1 | 8g7s.1 | 8ghu.1 | 8hsp.1 | 8htz.1 | 8hu1.1 | 8ifb.1 | 8ifc.1 | 8j1z.1 | 8jsg.1 | 8jsh.1 | 8k3o.1 | 8k4e.1 | 8kie.1 | 8p16.1 | 8p17.1 | 8p18.1 | 8peg.1 | 8phj.1 | 8pkl.1 | 8pva.1 | 8q4f.1 | 8qbt.1 | 8qk7.1 | 8qoa.1 | 8r6c.1 | 8r8m.1 | 8rpy.1 | 8rpz.1 | 8rq0.1 | 8rq2.1 | 8syl.1 | 8t5d.1 | 8t5h.1 | 8vs9.1 | 8vsa.1 | 8w51.1 | 8yuo.1 | 8yup.1 | 8yuq.1 | 8yur.1 | 8yus.1 | 9ax7.1 | 9ax8.1 | 9cg5.1 | 9cg6.1 | 9cg7.1 | 9cl9.1 | 9dyg.1 | 9fbv.1 | 9gr1.1 | 9gup.1 | 9guq.1 | 9gus.1 | 9gut.1 | 9guu.1 | 9guv.1 | 9guw.1 | 9gux.1