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SMTL ID : 8h0q.1

Structure of the GRP14-27-GRPR-Gq complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x ASN- HIS- TRP- ALA- VAL- GLY- HIS- LEU- MET: GRP(Non-covalent)

ASN-HIS-TRP-ALA-VAL-GLY-HIS-LEU-MET.1:

23 residues within 4Å:

Chain A: C.93, D.97, R.100, Y.101, A.103, D.104, R.105, W.106, P.117, E.175, F.193, I.194, S.195, P.198, W.277, N.280, Y.284, R.287, T.296, H.300, F.301, R.308, A.311

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:Y.101, A:Y.284, A:F.301
Hydrogen bonds: A:A.103, A:N.280, A:R.287, A:R.287, A:T.296, A:T.296, A:R.308
pi-Stacking: A:F.301, A:F.301

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:	5 residues within 4Å: Chain A: F.215, V.282, L.285, Y.286, Y.289 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.215, A:F.215, A:V.282, A:L.285, A:L.285, A:Y.289
CLR.3:	8 residues within 4Å: Chain A: L.171, P.174, F.178, H.206, I.209, H.210, A.213, V.217 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.171, A:P.174, A:F.178, A:F.178, A:H.206, A:I.209, A:A.213, A:V.217
CLR.4:	11 residues within 4Å: Chain A: F.129, T.132, A.136, K.140, K.160, I.164, I.167, L.171, V.217, I.225, Y.229 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.129, A:T.132, A:A.136, A:I.167, A:I.225, A:Y.229

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Li, C. et al., Molecular recognition of itch-associated neuropeptides by bombesin receptors. Cell Res. (2023)

Release Date

2023-08-09

Peptides

Gastrin-releasing peptide receptor: A
G-alpha q: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
scFv16: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
E

E
G

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Gastrin-releasing peptide receptor

G-alpha q

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFv16

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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