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SMTL ID : 8ied.1

Cryo-EM structure of GPR156-miniGo-scFv16 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-mer

Ligands

2 x 01: [(2R)-3-[(E)-hexadec-9-enoyl]oxy-2-octadecanoyloxy-propyl] 2-(trimethylazaniumyl)ethyl phosphate(Non-covalent)

01.1:

23 residues within 4Å:

Chain A: L.124, L.127, C.128, T.131, W.183, F.215, C.216, A.217, S.218, S.221, W.224, I.225, W.229, K.232, L.236, L.267, V.268, L.274, F.275, T.278, R.279, C.299, T.300

18 PLIP interactions:

18 interactions with chain A

Hydrophobic interactions: A:L.124, A:L.124, A:L.127, A:L.127, A:T.131, A:W.183, A:W.224, A:W.229, A:K.232, A:K.232, A:L.236, A:L.267, A:V.268, A:F.275, A:T.278
Hydrogen bonds: A:S.218
Salt bridges: A:R.279
pi-Cation interactions: A:F.215

01.2:

21 residues within 4Å:

Chain B: L.124, C.128, T.131, W.183, F.215, C.216, A.217, S.218, S.221, W.224, I.228, W.229, K.232, L.236, L.267, V.268, L.274, T.278, R.279, H.282, C.299

16 PLIP interactions:

16 interactions with chain B

Hydrophobic interactions: B:L.124, B:L.124, B:T.131, B:W.183, B:W.224, B:I.228, B:W.229, B:K.232, B:L.236, B:L.267, B:L.267, B:V.268, B:L.274, B:T.278
Salt bridges: B:R.279
pi-Cation interactions: B:F.215

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Shin, J. et al., Constitutive activation mechanism of a class C GPCR. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-02-14

Peptides

Probable G-protein coupled receptor 156: AB
Guanine nucleotide-binding protein G(o) subunit alpha: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Single-chain variable fragment scFv16: E
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
N

F
Y

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Probable G-protein coupled receptor 156

Guanine nucleotide-binding protein G(o) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Single-chain variable fragment scFv16

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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