SMTL ID : 8xzi.1

Cryo-EM structure of the CMF-019-bound human APLNR-Gi complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 01: (3~{S})-5-methyl-3-[[1-pentan-3-yl-2-(thiophen-2-ylmethyl)benzimidazol-5-yl]carbonylamino]hexanoic acid

01.1: 20 residues within 4Å: Chain A: Y.35, F.78, L.82, W.85, S.106, I.109, F.110, M.113, R.168, W.261, Y.264, V.267, K.268, Y.271, L.287, M.288, F.291, T.295, S.298, Y.299 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.85, A:I.109, A:W.261, A:Y.264, A:Y.264, A:Y.271, A:F.291, A:F.291, A:F.291, A:F.291, A:T.295 Hydrogen bonds: A:K.268 pi-Cation interactions: A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W.W. et al., Structure-based design of non-hypertrophic apelin receptor modulator. Cell (2024)

Release Date

2024-03-20

Peptides

Apelin receptor: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
S

Membrane

We predict this structure to be a membrane protein.
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Apelin receptor

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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