9ew3.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 9ew3.1

Ternary structure of 14-3-3s, C-RAF phosphopeptide 12-mer (pS259) and compound 78 (1084378)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x GLN- ARG- SER- THR- SEP- THR- PRO- ASN- VAL: RAF proto-oncogene serine/threonine-protein kinase(Non-covalent)

GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.1:

19 residues within 4Å:

Chain A: N.47, V.51, K.54, N.55, R.61, R.65, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.227, N.231, L.234, W.235
Ligands: WQN.6

19 PLIP interactions:

19 interactions with chain A

Hydrophobic interactions: A:L.234
Hydrogen bonds: A:N.47, A:R.65, A:G.176, A:N.180, A:E.187, A:N.231, A:N.231
Water bridges: A:S.50, A:N.55, A:R.61, A:R.61, A:R.61, A:R.65, A:N.180, A:N.180
Salt bridges: A:K.54, A:R.61, A:R.134

GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.8:

19 residues within 4Å:

Chain B: N.47, V.51, K.54, N.55, R.61, R.65, R.134, Y.135, G.176, L.179, N.180, V.183, Y.186, E.187, L.227, N.231, L.234, W.235
Ligands: WQN.13

22 PLIP interactions:

22 interactions with chain B

Hydrophobic interactions: B:L.234
Hydrogen bonds: B:N.47, B:R.65, B:Y.135, B:N.180, B:N.180, B:E.187, B:E.187, B:N.231, B:N.231, B:N.231
Water bridges: B:S.50, B:N.55, B:R.61, B:R.61, B:R.61, B:R.65, B:N.180, B:N.180
Salt bridges: B:K.54, B:R.61, B:R.134

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:	4 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain B: K.14 Ligand excluded by PLIP
CL.9:	4 residues within 4Å: Chain A: K.14 Chain B: E.88, Y.89, K.92 Ligand excluded by PLIP

6 x MG: MAGNESIUM ION(Non-covalent)

MG.3:	1 residues within 4Å: Chain A: E.94 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.94, H₂O.1, H₂O.3, H₂O.7, H₂O.8
MG.4:	1 residues within 4Å: Chain A: E.80 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.80, H₂O.2
MG.5:	1 residues within 4Å: Chain A: E.7 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.7, H₂O.2, H₂O.5, H₂O.9
MG.10:	1 residues within 4Å: Chain B: E.94 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.94, H₂O.11, H₂O.13, H₂O.17, H₂O.18
MG.11:	1 residues within 4Å: Chain B: E.80 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.80, H₂O.13
MG.12:	1 residues within 4Å: Chain B: E.7 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.7, H₂O.12, H₂O.15, H₂O.19

2 x WQN: 1-[8-(4-bromophenyl)sulfonyl-5-oxa-2,8-diazaspiro[3.5]nonan-2-yl]-2-chloranyl-ethanone(Non-covalent)

WQN.6:	12 residues within 4Å: Chain A: C.43, R.46, N.47, S.50, F.124, K.127, P.172, I.173, I.224 Ligands: GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.1, GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.1, GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.173, A:I.224 Hydrogen bonds: A:R.46 Water bridges: A:K.127
WQN.13:	12 residues within 4Å: Chain B: C.43, R.46, N.47, S.50, F.124, K.127, P.172, I.173, I.224 Ligands: GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.8, GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.8, GLN-ARG-SER-THR-SEP-THR-PRO-ASN-VAL.8 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.173, B:I.224 Hydrogen bonds: B:R.46 Water bridges: B:K.127, B:D.131

2 x CA: CALCIUM ION(Non-covalent)

CA.7:	2 residues within 4Å: Chain A: E.40, E.115 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.5, H₂O.7
CA.14:	2 residues within 4Å: Chain B: E.40, E.115 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.40, B:E.40, B:E.115, H₂O.16, H₂O.18

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Konstantinidou, M. et al., Small molecule stabilization of the 14-3-3sigma/CRAF complex inhibits the MAPK pathway. To Be Published

Release Date

2025-04-16

Peptides

14-3-3 protein sigma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AB)

Related Entries With Identical Sequence

3iqj.1 | 3iqu.1 | 3iqv.1 | 3mhr.1 | 4fl5.1 | 4iea.1 | 4jc3.1 | 4jdd.1 | 4y32.1 | 4y3b.1 | 4y5i.1 | 5hf3.1 | 5mhc.1 | 5moc.1 | 5mxo.1 | 5my9.1 | 5myc.1 | 5n5r.1 | 5n5t.1 | 5n5w.1 | 5n75.1 | 5oeh.1 | 6fau.1 | 6fav.1 | 6faw.1 | 6fbb.1 | 6fbw.1 | 6fby.1 | 6fcp.1 | 6fi4.1 more...less...

6fi5.1 | 6g6x.1 | 6g8i.1 | 6g8j.1 | 6g8k.1 | 6g8l.1 | 6g8p.1 | 6g8q.1 | 6ghp.1 | 6nv2.1 | 6qdr.1 | 6qds.1 | 6qdt.1 | 6qdu.1 | 6qiu.1 | 6r5l.1 | 6rhc.1 | 6rp6.1 | 6sin.1 | 6sio.1 | 6sip.1 | 6siq.1 | 6slv.1 | 6tch.1 | 6tjm.1 | 6tl3.1 | 6w0l.1 | 6xwd.1 | 6y58.1 | 6ye9.1 | 6yia.1 | 6yib.1 | 6yic.1 | 6ylu.1 | 6yow.1 | 6yoy.1 | 6yp2.1 | 6yp3.1 | 6yp8.1 | 6ypl.1 | 6ypy.1 | 6yq2.1 | 6yr5.1 | 6yr5.2 | 6yr6.1 | 6yr6.2 | 6yr7.1 | 6zcj.1 | 7aew.1 | 7b13.1 | 7b15.1 | 7nv4.1 | 7nvi.1 | 7nws.1 | 7nxs.1 | 7nxt.1 | 7nxw.1 | 7nxy.1 | 7ny4.1 | 7nye.1 | 7nyf.1 | 7nyg.1 | 7nz6.1 | 7nzg.1 | 7nzk.1 | 7nzv.1 | 7o07.1 | 7o34.1 | 7o3a.1 | 7o3f.1 | 7o3p.1 | 7o3q.1 | 7o3r.1 | 7o3s.1 | 7o57.1 | 7o59.1 | 7o5a.1 | 7o5c.1 | 7o5d.1 | 7o5f.1 | 7o5g.1 | 7o5o.1 | 7o5p.1 | 7o5s.1 | 7o5u.1 | 7o5x.1 | 7o6f.1 | 7o6g.1 | 7o6i.1 | 7o6j.1 | 7o6k.1 | 7o6m.1 | 7o6o.1 | 7pwt.1 | 7pwz.1 | 7zmu.1 | 7zmw.1 | 8a62.1 | 8a65.1 | 8a68.1 | 8a6f.1 | 8a6h.1 | 8adm.1 | 8afn.1 | 8ai0.1 | 8alr.1 | 8alt.1 | 8alv.1 | 8alw.1 | 8am7.1 | 8anf.1 | 8aoy.1 | 8aps.1 | 8aq1.1 | 8aqc.1 | 8aqe.1 | 8aqz.1 | 8ar4.1 | 8ar5.1 | 8arg.1 | 8aro.1 | 8arq.1 | 8arr.1 | 8arw.1 | 8arx.1 | 8ary.1 | 8arz.1 | 8as1.1 | 8at9.1 | 8atp.1 | 8atr.1 | 8ats.1 | 8au2.1 | 8aus.1 | 8auy.1 | 8av0.1 | 8av3.1 | 8av4.1 | 8av8.1 | 8awg.1 | 8axe.1 | 8axu.1 | 8aze.1 | 8b39.1 | 8bi7.1 | 8btq.1 | 8bwe.1 | 8bwh.1 | 8bwj.1 | 8bwx.1 | 8bwz.1 | 8bx0.1 | 8bx3.1 | 8bx4.1 | 8bxi.1 | 8bxm.1 | 8bxn.1 | 8bxo.1 | 8bxq.1 | 8bxs.1 | 8by9.1 | 8byb.1 | 8byc.1 | 8byd.1 | 8bye.1 | 8byf.1 | 8byg.1 | 8byo.1 | 8byy.1 | 8byz.1 | 8bz0.1 | 8bz9.1 | 8bza.1 | 8bzd.1 | 8bze.1 | 8bzf.1 | 8bzg.1 | 8bzh.1 | 8bzt.1 | 8c0k.1 | 8c0l.1 | 8c1y.1 | 8c28.1 | 8c2d.1 | 8c2e.1 | 8c2f.1 | 8c2g.1 | 8c2y.1 | 8c30.1 | 8c3c.1 | 8c3z.1 | 8c40.1 | 8c42.1 | 8c43.1 | 8c4f.1 | 8c4g.1 | 8q55.1 | 8q5c.1 | 8s42.1 | 8vsl.1 | 8vsm.1 | 8vsn.1 | 8vso.1 | 9ew1.1 | 9ew4.1 | 9ew5.1 | 9ew6.1 | 9ew7.1 | 9f35.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top