SMTL ID : 1j9c.1

Crystal Structure of tissue factor-factor VIIa complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC: alpha-D-glucopyranose(Post Translational Modification)

GLC.1: 3 residues within 4Å: Chain B: Q.2, S.5, Y.21 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.2, B:Y.21

1 x FUL: beta-L-fucopyranose(Post Translational Modification)

FUL.2: 6 residues within 4Å: Chain A: R.131 Chain B: G.11, G.12, S.13, F.24, L.26 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.13, B:F.24, A:R.131, A:R.131

1 x 0Z6: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide(Covalent)

0Z6.3: 18 residues within 4Å: Chain C: H.41, G.85, T.86, T.87, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:H.41, C:T.87, C:P.169, C:V.210, C:W.212 Hydrogen bonds: C:S.187, C:K.189, C:S.192, C:S.211, C:G.213, C:G.213, C:G.215 Water bridges: C:D.186, C:S.187 Salt bridges: C:D.186

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain C: N.170 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain C: E.58, D.60, E.63, H.64, E.68 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.58, C:D.60, C:E.68, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, M. et al., Ligand Induced Conformational Transitions of Tissue Factor. Crystal Structure of the Tissue Factor:Factor VIIa Complex. To be Published

Release Date

2004-07-27

Peptides

Tissue factor: A
factor VIIa light chain: B
factor VIIa heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

B
L

C
H

Tissue factor

factor VIIa light chain

factor VIIa heavy chain

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