SMTL ID : 1rk3.2 (1 other biounit)

crystal structure of the rat vitamin D receptor ligand binding domain complexed with 1,25-dihydroxyvitamin D3 and a synthetic peptide containing the NR2 box of DRIP 205

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

2 x VDX: 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL(Non-covalent)

VDX.1: 17 residues within 4Å: Chain A: Y.28, Y.32, L.61, L.67, V.68, S.71, I.105, R.108, S.109, S.112, W.120, C.122, V.134, H.139, L.143, H.231, Y.235 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.28, A:L.61, A:L.67, A:W.120, A:V.134, A:L.143 Hydrogen bonds: A:Y.28, A:Y.28, A:S.71, A:R.108, A:H.139 VDX.2: 17 residues within 4Å: Chain C: Y.28, Y.32, L.61, L.67, V.68, S.71, I.105, R.108, S.109, S.112, W.120, C.122, V.134, H.139, L.143, H.231, Y.235 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:Y.28, C:L.61, C:L.67, C:W.120, C:V.134, C:L.143 Hydrogen bonds: C:Y.28, C:S.71, C:R.108, C:H.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanhooke, J.L. et al., Molecular Structure of the Rat Vitamin D Receptor Ligand Binding Domain Complexed with 2-Carbon-Substituted Vitamin D(3) Hormone Analogues and a LXXLL-Containing Coactivator Peptide. Biochemistry (2004)

Release Date

2004-04-13

Peptides

Vitamin D3 receptor: AC
Peroxisome proliferator-activated receptor binding protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
C

D
C

Vitamin D3 receptor

Peroxisome proliferator-activated receptor binding protein

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