SMTL ID : 2o4j.2 (1 other biounit)

Crystal Structure of Rat Vitamin D Receptor Ligand Binding Domain Complexed with VitIII 17-20Z and the NR2 Box of DRIP 205

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

hetero-2-2-mer

Ligands

2 x VD4: (1R,3R,7E,17Z)-17-(5-hydroxy-1,5-dimethylhexylidene)-2-methylene-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

VD4.1: 20 residues within 4Å: Chain A: Y.28, Y.32, L.61, L.64, L.67, V.68, S.71, I.105, M.106, R.108, S.109, S.112, W.120, C.122, V.134, H.139, L.147, H.231, Y.235, L.238 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.28, A:L.61, A:L.64, A:L.67, A:I.105, A:W.120, A:V.134, A:L.147, A:L.238 Hydrogen bonds: A:Y.28, A:S.71, A:R.108, A:S.112, A:S.112 VD4.2: 20 residues within 4Å: Chain C: Y.28, Y.32, L.61, L.64, L.67, V.68, S.71, I.105, M.106, R.108, S.109, S.112, W.120, C.122, V.134, H.139, L.147, H.231, Y.235, L.238 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:Y.28, C:L.61, C:L.64, C:L.67, C:I.105, C:W.120, C:V.134, C:L.147, C:L.238 Hydrogen bonds: C:S.71, C:R.108, C:S.112, C:S.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanhooke, J.L. et al., New analogs of 2-methylene-19-nor-(20S)-1,25-dihydroxyvitamin D(3) with conformationally restricted side chains: Evaluation of biological activity and structural determination of VDR-bound conformations. Arch.Biochem.Biophys. (2007)

Release Date

2007-01-30

Peptides

Vitamin D3 receptor: AC
Peroxisome proliferator-activated receptor-binding protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
C

D
C

Vitamin D3 receptor

Peroxisome proliferator-activated receptor-binding protein

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