SMTL ID : 2o4r.2 (1 other biounit)

Crystal Structure of Rat Vitamin D Receptor Ligand Binding Domain Complexed with VitIII 17-20E and the NR2 Box of DRIP 205

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-2-2-mer

Ligands

2 x VD5: (1R,3R,7E,17E)-17-(5-hydroxy-1,5-dimethylhexylidene)-2-methylene-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

VD5.1: 15 residues within 4Å: Chain A: Y.28, Y.32, L.61, V.68, S.71, R.108, S.109, S.112, W.120, C.122, V.134, A.137, H.139, H.231, Y.235 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.28, A:L.61, A:V.68, A:V.68, A:W.120, A:V.134, A:V.134, A:A.137 Hydrogen bonds: A:Y.28, A:Y.28, A:R.108, A:H.231 VD5.2: 15 residues within 4Å: Chain C: Y.28, Y.32, L.61, V.68, S.71, R.108, S.109, S.112, W.120, C.122, V.134, A.137, H.139, H.231, Y.235 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:Y.28, C:L.61, C:V.68, C:V.68, C:W.120, C:V.134, C:V.134, C:A.137 Hydrogen bonds: C:Y.28, C:R.108, C:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanhooke, J.L. et al., New analogs of 2-methylene-19-nor-(20S)-1,25-dihydroxyvitamin D(3) with conformationally restricted side chains: Evaluation of biological activity and structural determination of VDR-bound conformations. Arch.Biochem.Biophys. (2007)

Release Date

2007-01-30

Peptides

Vitamin D3 receptor: AC
Peroxisome proliferator-activated receptor-binding protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
C

D
C

Vitamin D3 receptor

Peroxisome proliferator-activated receptor-binding protein

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