SMTL ID : 3vt7.1 (1 other biounit)

Crystal structures of rat VDR-LBD with W282R mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VDX: 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL(Non-covalent)

VDX.1: 17 residues within 4Å: Chain A: Y.38, Y.42, L.71, L.77, V.78, S.81, I.115, R.118, S.119, S.122, Y.139, V.144, A.147, H.149, L.153, H.241, Y.245 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.38, A:L.71, A:L.77, A:Y.139, A:Y.139, A:V.144, A:L.153, A:Y.245 Hydrogen bonds: A:Y.38, A:Y.42, A:S.81, A:R.118, A:H.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakabayashi, M. et al., Crystal structures of hereditary vitamin D-resistant rickets-associated vitamin D receptor mutants R270L and W282R bound to 1,25-dihydroxyvitamin D3 and synthetic ligands. J.Med.Chem. (2013)

Release Date

2013-05-22

Peptides

Vitamin D3 receptor: A
COACTIVATOR PEPTIDE DRIP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

COACTIVATOR PEPTIDE DRIP

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