SMTL ID : 3w0g.1

Crystal Structure of Rat VDR Ligand Binding Domain in Complex with Novel Nonsecosteroidal Ligands

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x W07: (2S)-3-{4-[2-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}phenyl)propan-2-yl]phenoxy}propane-1,2-diol(Non-covalent)

W07.1: 20 residues within 4Å: Chain A: Y.23, Y.27, L.56, L.59, A.60, L.62, V.63, S.66, I.100, R.103, S.104, S.107, W.115, C.117, V.129, H.134, H.226, Y.230, L.243, F.251 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.60, A:L.62, A:V.63, A:V.63, A:I.100, A:W.115, A:W.115, A:V.129, A:Y.230, A:L.243, A:F.251 Hydrogen bonds: A:Y.23, A:S.66, A:S.107, A:H.134 Water bridges: A:R.103, A:R.103, A:R.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asano, L. et al., Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands. Febs Lett. (2013)

Release Date

2013-10-09

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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