SMTL ID : 3vt9.1 (1 other biounit)

Crystal structures of rat VDR-LBD with W282R mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YI4: (1R,2Z,3R,5E,7E,9beta,17beta)-2-(2-hydroxyethylidene)-17-[(2R)-6-hydroxy-6-methylheptan-2-yl]-9-(prop-2-en-1-yl)-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

YI4.1: 18 residues within 4Å: Chain A: Y.38, D.39, Y.42, F.45, L.71, V.78, Y.80, S.81, I.115, R.118, S.119, S.122, Y.139, V.144, A.147, H.149, L.153, H.241 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.38, A:L.71, A:V.78, A:I.115, A:Y.139, A:V.144, A:L.153 Hydrogen bonds: A:D.39, A:Y.42, A:R.118, A:S.122, A:S.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakabayashi, M. et al., Crystal structures of hereditary vitamin D-resistant rickets-associated vitamin D receptor mutants R270L and W282R bound to 1,25-dihydroxyvitamin D3 and synthetic ligands. J.Med.Chem. (2013)

Release Date

2013-05-22

Peptides

Vitamin D3 receptor: A
COACTIVATOR PEPTIDE DRIP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

COACTIVATOR PEPTIDE DRIP

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