SMTL ID : 4nga.1

Factor viia in complex with the inhibitor (2R)-2-[(1-aminoisoquinolin-6-yl)amino]-2-[3-ethoxy-4-(propan-2-yloxy)phenyl]-N-[2-(propan-2-ylsulfonyl)benzyl]ethanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 2KF: (2R)-2-[(1-aminoisoquinolin-6-yl)amino]-2-[3-ethoxy-4-(propan-2-yloxy)phenyl]-N-[2-(propan-2-ylsulfonyl)benzyl]ethanamide(Non-covalent)

2KF.1: 23 residues within 4Å: Chain A: L.25, C.26, H.41, D.44, K.45, T.86, T.87, D.90, P.169, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223 Ligands: GOL.9 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.25, A:V.210, A:W.212, A:W.212 Hydrogen bonds: A:D.186, A:S.187, A:S.192, A:S.192 Water bridges: A:W.212 pi-Stacking: A:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.1, H2O.1

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.71, R.72, H.97, Q.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98, A:Q.98 Salt bridges: A:R.72, A:H.97 SO4.4: 6 residues within 4Å: Chain A: C.158, S.162, I.171, H.221, F.222, V.224 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.162, A:F.222, A:F.222 Salt bridges: A:H.221 SO4.5: 5 residues within 4Å: Chain A: I.31, N.32, Q.236, M.239 Chain B: H.26 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Water bridges: B:H.26 Salt bridges: B:H.26 Hydrogen bonds: A:I.31, A:N.32, A:Q.236 SO4.6: 7 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 Ligands: GOL.9 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.21, A:K.45, A:K.47, A:N.48, A:N.48, A:N.48

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: F.43, D.44, W.49, I.78, P.84, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.43 GOL.8: 7 residues within 4Å: Chain A: K.5, C.7, E.11, C.12, L.128, V.147 Chain B: I.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.11, A:E.11 GOL.9: 5 residues within 4Å: Chain A: V.20, L.25, K.45 Ligands: 2KF.1, SO4.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Design and Synthesis of Phenylpyrrolidine Phenylglycinamides As Highly Potent and Selective TF-FVIIa Inhibitors. ACS Med Chem Lett (2014)

Release Date

2014-01-08

Peptides

Factor VIIa (Heavy Chain): A
Factor VIIa (Light Chain): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Factor VIIa (Heavy Chain)

Factor VIIa (Light Chain)

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