SMTL ID : 4x8u.1

FACTOR VIIA IN COMPLEX WITH THE INHIBITOR 5-CHLORO-1H-INDOLE-2-CARBOXYLIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 3ZB: 5-chloro-1H-indole-2-carboxylic acid(Non-covalent)

3ZB.1: 13 residues within 4Å: Chain A: D.186, S.187, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223, V.224, Y.225 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.210 Hydrogen bonds: A:G.215 Water bridges: A:G.213

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.1, H2O.2

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.70, R.71, R.72, H.97, Q.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98 Water bridges: A:S.70 Salt bridges: A:R.72, A:H.97 SO4.4: 6 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.21, A:K.47, A:N.48 SO4.5: 6 residues within 4Å: Chain A: C.158, S.162, I.171, H.221, F.222, V.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.162, A:F.222 Salt bridges: A:H.221 SO4.6: 6 residues within 4Å: Chain A: I.31, N.32, L.111, Q.236, M.239 Chain B: H.26 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Water bridges: B:H.26, B:E.27 Salt bridges: B:H.26 Hydrogen bonds: A:N.32, A:Q.236

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: F.43, D.44, W.49, P.84, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.43 GOL.8: 7 residues within 4Å: Chain A: C.7, E.11, C.12, L.128, W.204 Chain B: I.49, L.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheney, D.L. et al., Discovery of Novel P1 Groups for Coagulation Factor VIIa Inhibition Using Fragment-Based Screening. J.Med.Chem. (2015)

Release Date

2015-03-25

Peptides

Factor VIIa (Heavy Chain): A
Factor VIIa (Light Chain): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Factor VIIa (Heavy Chain)

Factor VIIa (Light Chain)

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