SMTL ID : 5l30.1

Factor VIIa in complex with the inhibitor (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-4,15,17-trimethyl-7-[1-(1H-tetrazol-5-yl)cyclopropyl]-13-oxa-4,11-diazatricyclo[14.2.2.1~6,10~]henicosa-1(18),6(21),7,9,16,19-hexaene-3,12-dione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 70A: (2R,15R)-2-[(1-aminoisoquinolin-6-yl)amino]-4,15,17-trimethyl-7-[1-(1H-tetrazol-5-yl)cyclopropyl]-13-oxa-4,11-diazatricyclo[14.2.2.1~6,10~]henicosa-1(18),6(21),7,9,16,19-hexaene-3,12-dione(Non-covalent)

70A.1: 24 residues within 4Å: Chain A: L.25, C.26, H.41, C.42, D.44, K.45, G.85, T.86, T.87, D.90, P.169, D.186, S.187, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, G.223, V.224 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:H.41, A:D.44, A:T.87, A:V.210, A:W.212 Hydrogen bonds: A:K.45, A:D.186, A:S.192, A:S.192 Water bridges: A:D.44, A:G.85, A:W.212, A:Q.214 pi-Stacking: A:H.41, A:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.2, H2O.8

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.70, R.71, R.72, H.97, Q.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98 Salt bridges: A:R.72, A:H.97 SO4.4: 6 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.21, A:K.47, A:N.48, A:N.48 SO4.5: 5 residues within 4Å: Chain A: S.162, I.171, H.221, F.222, V.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.162, A:F.222, A:F.222 Water bridges: A:Q.214 Salt bridges: A:H.221 SO4.6: 5 residues within 4Å: Chain A: I.31, N.32, Q.236, M.239 Chain B: H.29 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.31, A:N.32, A:Q.236, A:Q.236 Salt bridges: B:H.29

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: F.43, W.49, I.78, P.84, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.43 GOL.8: 4 residues within 4Å: Chain A: V.124, F.126, H.199, Y.200 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.126, A:H.199 Water bridges: A:F.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ladziata, V.U. et al., Synthesis and P1' SAR exploration of potent macrocyclic tissue factor-factor VIIa inhibitors. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-09-28

Peptides

Coagulation factor VII (Heavy Chain): A
Coagulation factor VII (Light Chain): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Coagulation factor VII (Heavy Chain)

Coagulation factor VII (Light Chain)

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