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SMTL ID : 5mb3.1

Fragment 333 at a concentration of 50mM in complex with Endothiapepsin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:	6 residues within 4Å: Chain A: V.272, P.274, Y.277, A.312, S.329, K.330 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.272, A:S.329, A:K.330, A:K.330 Water bridges: A:V.272
GOL.2:	6 residues within 4Å: Chain A: Y.202, K.210, T.212, P.228, T.230, V.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.212, A:T.230 Water bridges: A:T.230
GOL.3:	6 residues within 4Å: Chain A: P.228, S.297, A.298, G.301, I.302, N.303 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.301, A:I.302 Water bridges: A:I.300

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4:

5 residues within 4Å:

Chain A: C.255, D.279, G.281, P.282, C.290

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:D.279, A:G.281

1 x 5GL: 4-propan-2-ylsulfanyl-1-propyl-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-2-one(Non-covalent)

5GL.5:

9 residues within 4Å:

Chain A: L.13, D.15, L.224, V.248, G.249, G.250, F.280, F.291, Q.295

3 PLIP interactions:

3 interactions with chain A

Hydrophobic interactions: A:F.280, A:F.291
pi-Stacking: A:F.291

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Radeva, N. et al., Comparison of cocktails versus single soaking experiments. To Be Published

Release Date

2017-12-20

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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1e5o.1 | 1e80.1 | 1e81.1 | 1e82.1 | 1eed.1 | 1ent.1 | 1epl.1 | 1epm.1 | 1epn.1 | 1epo.1 | 1epp.1 | 1epq.1 | 1epr.1 | 1er8.1 | 1od1.1 | 2er0.1 | 2er6.1 | 2er7.1 | 2er9.1 | 2v00.1 | 3er3.1 | 3er5.1 | 3lzy.1 | 3pb5.1 | 3pbd.1 | 3pbz.1 | 3pcw.1 | 3pcz.1 | 3pgi.1 | 3pi0.1 more...less...

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Background

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