SMTL ID : 5paj.1

Crystal Structure of Factor VIIa in complex with 1-(1-aminoisoquinolin-6-yl)-3-benzylurea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: S.15, D.16 Chain B: R.119 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: R.50, G.246, V.247 Ligand excluded by PLIP

1 x 7XJ: 1-(1-azanylisoquinolin-6-yl)-3-(phenylmethyl)urea(Non-covalent)

7XJ.2: 13 residues within 4Å: Chain B: H.41, T.86, D.186, S.187, K.189, S.192, V.210, S.211, W.212, G.213, G.215, C.216, G.223 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:H.41, B:V.210 Hydrogen bonds: B:D.186, B:S.187, B:K.189, B:S.192, B:S.192 Water bridges: B:S.192, B:W.212 pi-Stacking: B:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain B: E.58, D.60, E.63, E.68 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.58, B:D.60, B:E.63, B:E.68, H2O.8

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain B: M.154, T.155, R.227 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.155 Water bridges: B:R.152, B:M.154, B:T.155, B:Q.156, B:R.227 Salt bridges: B:R.227 SO4.6: 2 residues within 4Å: Chain B: S.241, E.242 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.242 Water bridges: B:R.240 SO4.7: 5 residues within 4Å: Chain B: F.43, D.44, W.49, P.84, L.248 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.44 SO4.8: 2 residues within 4Å: Chain B: H.199, W.204 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.199 Salt bridges: B:H.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayweg, A. et al., Crystal Structure of a Factor VIIa complex. To be published

Release Date

2017-06-21

Peptides

Coagulation factor VII light chain: A
Coagulation factor VII heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VII light chain

Coagulation factor VII heavy chain

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