SMTL ID : 5tqe.1

Factor VIIa in complex with the inhibitor (5R)-5-[(1-aminoisoquinolin-6-yl)amino]-19-(cyclopropylsulfonyl)-3-methyl-13-oxa-3,15-diazatricyclo[14.3.1.1~6,10~]henicosa-1(20),6(21),7,9,16,18-hexaene-4,14-dione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7KQ: (5R)-5-[(1-aminoisoquinolin-6-yl)amino]-19-(cyclopropylsulfonyl)-3-methyl-13-oxa-3,15-diazatricyclo[14.3.1.1~6,10~]henicosa-1(20),6(21),7,9,16,18-hexaene-4,14-dione(Non-covalent)

7KQ.1: 24 residues within 4Å: Chain A: L.25, C.26, H.41, C.42, D.44, K.45, G.85, T.86, T.87, D.186, S.187, C.188, K.189, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, A.217, G.223 Ligands: GOL.9 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.25, A:D.44, A:T.87, A:V.210, A:W.212 Hydrogen bonds: A:D.186, A:S.187, A:S.192, A:S.192 Water bridges: A:D.44, A:W.212, A:Q.214 pi-Stacking: A:H.41

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.58, D.60, E.63, E.68 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:D.60, A:E.63, A:E.68, H2O.1, H2O.7

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.71, R.72, H.97, Q.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.72, A:H.97, A:Q.98 Salt bridges: A:R.72, A:H.97 SO4.4: 7 residues within 4Å: Chain A: V.20, N.21, K.45, I.46, K.47, N.48 Ligands: GOL.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.21, A:K.45, A:K.47, A:N.48 SO4.5: 5 residues within 4Å: Chain A: S.162, I.171, H.221, F.222, V.224 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.162, A:F.222 Water bridges: A:Q.214 Salt bridges: A:H.221 SO4.6: 6 residues within 4Å: Chain A: I.31, N.32, L.111, Q.236, M.239 Chain B: H.26 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.32, A:Q.236 Water bridges: B:H.26, B:H.26 Salt bridges: B:H.26

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: F.43, D.44, W.49, I.78, P.84, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.43 GOL.8: 6 residues within 4Å: Chain A: E.11, C.12, L.128, W.204 Chain B: I.49, L.52 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.11, A:E.11 Water bridges: A:K.5, A:W.204 GOL.9: 5 residues within 4Å: Chain A: V.20, L.25, K.45 Ligands: 7KQ.1, SO4.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.20, A:N.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, J.M. et al., Design and Synthesis of Novel Meta-Linked Phenylglycine Macrocyclic FVIIa Inhibitors. ACS Med Chem Lett (2017)

Release Date

2017-02-01

Peptides

Factor VIIa (Heavy Chain): A
Factor VIIa (Light Chain): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Factor VIIa (Heavy Chain)

Factor VIIa (Light Chain)

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