SMTL ID : 7dxa.1

PSII intermediate Psb28-RC47

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
22 x CLA: CHLOROPHYLL A(Non-covalent)
2 x PHO: PHEOPHYTIN A(Non-covalent)(Covalent)
6 x BCR: BETA-CAROTENE(Non-covalent)
1 x CL: CHLORIDE ION(Non-functional Binders)
7 x MGE: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE(Non-covalent)(Covalent)
2 x UNL: UNKNOWN LIGAND
3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
1 x FE2: FE (II) ION(Non-covalent)
1 x PQ9: 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE(Non-covalent)
1 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Xiao, Y. et al., Structural insights into cyanobacterial photosystem II intermediates associated with Psb28 and Tsl0063. Nat.Plants (2021)
Release Date
2021-06-30
Peptides
Photosystem II reaction center Psb28 protein: A
Tsl0063 protein: B
Photosystem II protein D1: C
Photosystem II CP47 reaction center protein: D
Photosystem II D2 protein: E
Cytochrome b559 subunit alpha: F
Cytochrome b559 subunit beta: G
Photosystem II reaction center protein H: H
Photosystem II reaction center protein I: I
Photosystem II reaction center protein L: J
Photosystem II reaction center protein M: K
Photosystem II reaction center protein T: L
Photosystem II reaction center protein X: M
unidentified transmembrane protein: N
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
a
D
b
E
d
F
e
G
f
H
h
I
i
J
l
K
m
L
t
M
x
N
C
Membrane
We predict this structure to be a membrane protein.

Photosystem II reaction center Psb28 protein

Tsl0063 protein

Photosystem II protein D1

Photosystem II CP47 reaction center protein

Photosystem II D2 protein

Cytochrome b559 subunit alpha

Cytochrome b559 subunit beta

Photosystem II reaction center protein H

Photosystem II reaction center protein I

Photosystem II reaction center protein L

Photosystem II reaction center protein M

Photosystem II reaction center protein T

Photosystem II reaction center protein X

unidentified transmembrane protein

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1izl.1 | 1s5l.1 | 1s5l.2 | 1w5c.1 | 1w5c.2 | 2axt.1 | 3a0b.1 | 3a0h.1 | 3kzi.1 | 3wu2.1 | 4fby.1 | 4il6.1 | 4ixq.1 | 4ixr.1 | 4pbu.1 | 4pj0.1 | 4rvy.1 | 4tnh.1 | 4tni.1 | 4tnj.1 | 4tnk.1 | 4ub6.1 | 4ub6.2 | 4ub8.1 | 4ub8.2 | 4v62.1 | 4v62.2 | 4v82.1 | 5b5e.1 | 5b66.1  more...