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SMTL ID : 7jto.1

Crystal structure of Protac MS33 in complex with the WD repeat-containing protein 5 and pVHL:ElonginC:ElonginB

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
4 x SCN: THIOCYANATE ION(Non-functional Binders)
5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
1 x VKA: 3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide(Non-covalent)
1 x GOL: GLYCEROL(Non-functional Binders)
1 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yu, X. et al., A selective WDR5 degrader inhibits acute myeloid leukemia in patient-derived mouse models. Sci Transl Med (2021)
Release Date
2021-10-06
Peptides
WD repeat-containing protein 5: A
Elongin-B: B
Elongin-C: C
von Hippel-Lindau disease tumor suppressor: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
J
C
K
D
L

WD repeat-containing protein 5

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

Related Entries With Identical Sequence

1lqb.1 | 1lqb.2 | 2c9w.1 | 2izv.1 | 3dcg.1 | 3dcg.2 | 3zng.1 | 3zng.2 | 3zrc.1 | 3zrc.2 | 3zrc.3 | 3zrc.4 | 3zrf.1 | 3zrf.2 | 3zrf.3 | 3zrf.4 | 3ztc.1 | 3ztc.2 | 3ztc.3 | 3ztc.4 | 3ztd.1 | 3ztd.2 | 3ztd.3 | 3ztd.4 | 3zun.1 | 3zun.2 | 3zun.3 | 3zun.4 | 4ajy.1 | 4awj.1  more...