SMTL ID : 1o5d.1

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CR9: 2-{5-[AMINO(IMINIO)METHYL]-6-FLUORO-1H-BENZIMIDAZOL-2-YL}-6-[(2-METHYLCYCLOHEXYL)OXY]BENZENOLATE(Non-covalent)

CR9.1: 21 residues within 4Å: Chain B: L.25, C.26, H.41, C.42, D.44, K.45, D.186, S.187, C.188, K.189, G.190, S.192, V.210, S.211, W.212, G.213, Q.214, G.215, C.216, A.217, G.223 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:K.189, B:V.210 Hydrogen bonds: B:H.41, B:D.186, B:S.187, B:S.192, B:S.192, B:G.215 Water bridges: B:K.189, B:G.190, B:S.192, B:Q.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katz, B.A. et al., Dissecting and designing inhibitor selectivity determinants at the S1 site using an artificial Ala190 protease (Ala190 uPA). J.Mol.Biol. (2004)

Release Date

2004-09-21

Peptides

Coagulation factor VII: A
Coagulation factor VII: B
Tissue factor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
T

Coagulation factor VII

Coagulation factor VII

Tissue factor

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