SMTL ID : 9m1d.1

Vitamin D receptor complex with a methyldiphenylpropylsilane derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: (4~{S})-5-[4-[[4-(2-ethyl-2-oxidanyl-butoxy)-3-methyl-phenyl]-methyl-propyl-silyl]-2-methyl-phenoxy]-4-oxidanyl-pentanoic acid

01.1: 19 residues within 4Å: Chain A: T.37, Y.38, L.71, L.74, A.75, L.77, V.78, S.81, K.84, I.112, I.115, R.118, S.119, W.130, Y.139, V.144, H.149, H.241, Y.245 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.38, A:L.71, A:L.74, A:L.77, A:L.77, A:V.78, A:I.112, A:Y.139, A:V.144, A:Y.245 Hydrogen bonds: A:R.118 Salt bridges: A:K.84, A:R.118 pi-Stacking: A:W.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mudiyanselage, H.N.T.N. et al., Structure-activity relationship and crystallographic analyses of non-secosteroidal vitamin D receptor ligands bearing diphenylsilane core as a hydrophobic pharmacophore. Bioorg.Med.Chem. (2025)

Release Date

2025-06-11

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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